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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915975
Clone id YMU001_000081_C09
Library
Length 351
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCTTATTTTATACCTTTTGAGGATTGGGACCAGCAATTTAACATCTTTGGTTATTGCATT
TGGCATTGCTGCCAATGGGAGGTTTGAGCACTTTGGTACTCTAACATGACATTGTACACC
AAAAGTTGGTGCTTCATCGATAAAACTGCAGGGCAGTTTTTTTCTCAAGATCTGACCTTA
TCACAATAGCTCAAAACTTTTGTATCGAAAGGGTAAAAGTTTATACACAAGAATTTGTTA
GCAGCAGAATTCAAGCTTTGTGTTGTATCAAACATGGTGGAGGATGTAATGCCTATGCCG
TGTTTGATGCAAAGAGGAGCGGAGCAAAATATCGCAGAAAGAATCCAAGAT
■■Homology search results ■■ -
sp_hit_id Q9IB75
Definition sp|Q9IB75|PGS1_XENLA Biglycan OS=Xenopus laevis
Align length 88
Score (bit) 40.0
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915975|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_C09.
         (351 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9IB75|PGS1_XENLA Biglycan OS=Xenopus laevis GN=bgn PE=2 SV=1       40   0.004
sp|Q9GKQ6|PGS1_PIG Biglycan (Fragments) OS=Sus scrofa GN=BGN PE=...    39   0.010
sp|O46390|PGS1_SHEEP Biglycan OS=Ovis aries GN=BGN PE=2 SV=1           37   0.023
sp|P21809|PGS1_BOVIN Biglycan OS=Bos taurus GN=BGN PE=1 SV=3           37   0.023
sp|O46403|PGS1_HORSE Biglycan OS=Equus caballus GN=BGN PE=2 SV=1       37   0.030
sp|O02678|PGS1_CANFA Biglycan OS=Canis familiaris GN=BGN PE=2 SV=1     37   0.030
sp|P21810|PGS1_HUMAN Biglycan OS=Homo sapiens GN=BGN PE=1 SV=2         36   0.067
sp|P47853|PGS1_RAT Biglycan OS=Rattus norvegicus GN=Bgn PE=2 SV=1      35   0.088
sp|P28653|PGS1_MOUSE Biglycan OS=Mus musculus GN=Bgn PE=2 SV=1         35   0.088
sp|Q99MQ4|ASPN_MOUSE Asporin OS=Mus musculus GN=Aspn PE=2 SV=1         33   0.33 
sp|Q9BXN1|ASPN_HUMAN Asporin OS=Homo sapiens GN=ASPN PE=1 SV=2         32   0.74 
sp|Q9TTE2|PGS2_SHEEP Decorin OS=Ovis aries GN=DCN PE=2 SV=1            32   0.97 
sp|Q9DE68|PGS2_COTJA Decorin OS=Coturnix coturnix japonica GN=DC...    32   0.97 
sp|P28675|PGS2_CHICK Decorin OS=Gallus gallus GN=DCN PE=1 SV=1         32   0.97 
sp|P21793|PGS2_BOVIN Decorin OS=Bos taurus GN=DCN PE=1 SV=2            32   0.97 
sp|Q3ZBN5|ASPN_BOVIN Asporin OS=Bos taurus GN=ASPN PE=2 SV=1           32   0.97 
sp|Q28888|PGS2_RABIT Decorin OS=Oryctolagus cuniculus GN=DCN PE=...    32   1.3  
sp|Q9XSD9|PGS2_PIG Decorin OS=Sus scrofa GN=DCN PE=2 SV=1              32   1.3  
sp|Q5R1V9|PGS2_PANTR Decorin OS=Pan troglodytes GN=DCN PE=2 SV=1       32   1.3  
sp|P07585|PGS2_HUMAN Decorin OS=Homo sapiens GN=DCN PE=1 SV=1          32   1.3  
sp|O46542|PGS2_HORSE Decorin OS=Equus caballus GN=DCN PE=2 SV=1        32   1.3  
sp|Q29393|PGS2_CANFA Decorin OS=Canis familiaris GN=DCN PE=2 SV=2      32   1.3  
sp|Q9H3E2|SNX25_HUMAN Sorting nexin-25 OS=Homo sapiens GN=SNX25 ...    30   4.8  
sp|Q01046|UL49_SHV21 Uncharacterized gene 66 protein OS=Saimirii...    29   8.2  

>sp|Q9IB75|PGS1_XENLA Biglycan OS=Xenopus laevis GN=bgn PE=2 SV=1
          Length = 368

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
 Frame = -1

Query: 243 C*QILVYKLLPFRYKSFE--LL**GQILRKKLPCSFIDEAPT---------------FGV 115
           C  ILV   LPF  + F    +  G  + K    S +   PT               FG 
Sbjct: 8   CSCILVIHALPFEQRGFWDFSMDDGMAMMKDEEASGVGPIPTESIPDVGLPPMDLCPFGC 67

Query: 114 QCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           QCH+RV +CS+L L ++P  + KD  LL
Sbjct: 68  QCHLRVVQCSDLGLTSIPKNLPKDTTLL 95


>sp|Q9GKQ6|PGS1_PIG Biglycan (Fragments) OS=Sus scrofa GN=BGN PE=2
           SV=2
          Length = 272

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = -1

Query: 156 LPCSFIDEAPTFGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           LP +F    P FG  CH+RV +CS+L L A+P  I+ D  LL
Sbjct: 56  LPPTFSAMCP-FGCHCHLRVVQCSDLGLKAVPKEISPDTTLL 96


>sp|O46390|PGS1_SHEEP Biglycan OS=Ovis aries GN=BGN PE=2 SV=1
          Length = 369

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -1

Query: 156 LPCSFIDEAPTFGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           LP ++    P FG  CH+RV +CS+L L A+P  I+ D  LL
Sbjct: 56  LPPTYSAMCP-FGCHCHLRVVQCSDLGLKAVPKEISPDTTLL 96


>sp|P21809|PGS1_BOVIN Biglycan OS=Bos taurus GN=BGN PE=1 SV=3
          Length = 369

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -1

Query: 156 LPCSFIDEAPTFGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           LP ++    P FG  CH+RV +CS+L L A+P  I+ D  LL
Sbjct: 56  LPPTYSAMCP-FGCHCHLRVVQCSDLGLKAVPKEISPDTTLL 96


>sp|O46403|PGS1_HORSE Biglycan OS=Equus caballus GN=BGN PE=2 SV=1
          Length = 372

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG  CH+RV +CS+L L A+P  I+ D  LL
Sbjct: 69  FGCHCHLRVVQCSDLGLKAVPKEISPDTTLL 99


>sp|O02678|PGS1_CANFA Biglycan OS=Canis familiaris GN=BGN PE=2 SV=1
          Length = 369

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG  CH+RV +CS+L L A+P  I+ D  LL
Sbjct: 66  FGCHCHLRVVQCSDLGLKAVPKEISPDTMLL 96


>sp|P21810|PGS1_HUMAN Biglycan OS=Homo sapiens GN=BGN PE=1 SV=2
          Length = 368

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG  CH+RV +CS+L L ++P  I+ D  LL
Sbjct: 65  FGCHCHLRVVQCSDLGLKSVPKEISPDTTLL 95


>sp|P47853|PGS1_RAT Biglycan OS=Rattus norvegicus GN=Bgn PE=2 SV=1
          Length = 369

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG  CH+RV +CS+L L  +P  I+ D  LL
Sbjct: 66  FGCHCHLRVVQCSDLGLKTVPKEISPDTTLL 96


>sp|P28653|PGS1_MOUSE Biglycan OS=Mus musculus GN=Bgn PE=2 SV=1
          Length = 369

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG  CH+RV +CS+L L  +P  I+ D  LL
Sbjct: 66  FGCHCHLRVVQCSDLGLKTVPKEISPDTTLL 96


>sp|Q99MQ4|ASPN_MOUSE Asporin OS=Mus musculus GN=Aspn PE=2 SV=1
          Length = 373

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG QC+ RV  CS+L L ++PN I  D +++
Sbjct: 70  FGCQCYSRVVHCSDLGLTSVPNNIPFDTRMV 100
tr_hit_id Q0P4I3
Definition tr|Q0P4I3|Q0P4I3_XENTR Putative uncharacterized protein MGC147411 OS=Xenopus tropicalis
Align length 89
Score (bit) 40.0
E-value 0.057
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915975|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_C09.
         (351 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0P4I3|Q0P4I3_XENTR Putative uncharacterized protein MGC14741...    40   0.057
tr|B7FEW6|B7FEW6_XENLA BGN protein OS=Xenopus laevis GN=BGN PE=2...    40   0.057
tr|Q9DDZ7|Q9DDZ7_PETMA Biglycan-like protein 2 OS=Petromyzon mar...    40   0.075
tr|Q9DDZ8|Q9DDZ8_PETMA Biglycan-like protein 2 (Fragment) OS=Pet...    39   0.13 
tr|Q6GLQ6|Q6GLQ6_XENLA MGC84390 protein OS=Xenopus laevis GN=bgn...    39   0.17 
tr|Q865V9|Q865V9_SHEEP Biglycan (Fragment) OS=Ovis aries PE=2 SV=1     37   0.37 
tr|Q6PBP5|Q6PBP5_DANRE Zgc:77123 protein (Fragment) OS=Danio rer...    36   1.1  
tr|Q6NYY6|Q6NYY6_DANRE Zgc:77123 OS=Danio rerio GN=zgc:77123 PE=...    36   1.1  
tr|Q5XHD6|Q5XHD6_XENLA LOC495030 protein OS=Xenopus laevis GN=as...    36   1.1  
tr|Q4T5R8|Q4T5R8_TETNG Chromosome undetermined SCAF9148, whole g...    36   1.1  
tr|B7ZDB5|B7ZDB5_DANRE Novel protein similar to biglycan-like pr...    36   1.1  
tr|A8BBG1|A8BBG1_DANRE Zgc:77123 (Fragment) OS=Danio rerio GN=zg...    36   1.1  
tr|Q5RAY4|Q5RAY4_PONAB Putative uncharacterized protein DKFZp468...    36   1.1  
tr|Q8NAB7|Q8NAB7_HUMAN cDNA FLJ35635 fis, clone SPLEN2011805, hi...    36   1.1  
tr|Q53HU6|Q53HU6_HUMAN Biglycan preproprotein variant (Fragment)...    36   1.1  
tr|Q53FI4|Q53FI4_HUMAN Biglycan preproprotein variant (Fragment)...    36   1.1  
tr|B4DQD6|B4DQD6_HUMAN cDNA FLJ59955, moderately similar to Bigl...    36   1.1  
tr|B4DDQ2|B4DDQ2_HUMAN cDNA FLJ55187, highly similar to Biglycan...    36   1.1  
tr|B4DDN7|B4DDN7_HUMAN cDNA FLJ59839, highly similar to Homo sap...    36   1.1  
tr|A8K7E0|A8K7E0_HUMAN cDNA FLJ76911, highly similar to Homo sap...    36   1.1  
tr|A6NLG9|A6NLG9_HUMAN cDNA FLJ36740 fis, clone UTERU2013322, hi...    36   1.1  
tr|Q7TMW3|Q7TMW3_MOUSE Biglycan OS=Mus musculus GN=Bgn PE=2 SV=1       35   1.4  
tr|Q6PG76|Q6PG76_MOUSE Bgn protein OS=Mus musculus GN=Bgn PE=2 SV=1    35   1.4  
tr|Q3UXK8|Q3UXK8_MOUSE Putative uncharacterized protein OS=Mus m...    35   1.4  
tr|Q3TNY9|Q3TNY9_MOUSE Biglycan OS=Mus musculus GN=Bgn PE=2 SV=1       35   1.4  
tr|Q3TAF9|Q3TAF9_MOUSE Putative uncharacterized protein OS=Mus m...    35   1.4  
tr|Q9DE00|Q9DE00_PETMA Biglycan-like protein 1 (Fragment) OS=Pet...    35   1.8  
tr|Q6J0Y6|Q6J0Y6_PAROL Decorin OS=Paralichthys olivaceus PE=2 SV=1     35   2.4  
tr|Q9DE03|Q9DE03_ORENI Decorin OS=Oreochromis niloticus PE=2 SV=1      34   3.1  
tr|Q803T1|Q803T1_DANRE Decorin OS=Danio rerio GN=dcn PE=2 SV=1         33   5.4  

>tr|Q0P4I3|Q0P4I3_XENTR Putative uncharacterized protein MGC147411
           OS=Xenopus tropicalis GN=bgn PE=2 SV=1
          Length = 369

 Score = 40.0 bits (92), Expect = 0.057
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
 Frame = -1

Query: 243 C*QILVYKLLPFRYKSFE--LL**GQILRKKLPCSFIDEAPT----------------FG 118
           C  ILV   LPF  + F    +  G  + K    S +D   T                FG
Sbjct: 8   CSCILVIHALPFEQRGFWDFTMDDGMAMMKDEEASGVDPTDTVPDVGSTPMPPMDLCPFG 67

Query: 117 VQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
            QCH+RV +CS+L L ++P  + KD  LL
Sbjct: 68  CQCHLRVVQCSDLGLTSVPKNLPKDTTLL 96


>tr|B7FEW6|B7FEW6_XENLA BGN protein OS=Xenopus laevis GN=BGN PE=2
           SV=1
          Length = 368

 Score = 40.0 bits (92), Expect = 0.057
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
 Frame = -1

Query: 243 C*QILVYKLLPFRYKSFE--LL**GQILRKKLPCSFIDEAPT---------------FGV 115
           C  ILV   LPF  + F    +  G  + K    S +   PT               FG 
Sbjct: 8   CSCILVIHALPFEQRGFWDFSMDDGMAMMKDEEASGVGPIPTESIPDVGLPPMDLCPFGC 67

Query: 114 QCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           QCH+RV +CS+L L ++P  + KD  LL
Sbjct: 68  QCHLRVVQCSDLGLTSIPKNLPKDTTLL 95


>tr|Q9DDZ7|Q9DDZ7_PETMA Biglycan-like protein 2 OS=Petromyzon
           marinus GN=BGL2 PE=2 SV=1
          Length = 410

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = -1

Query: 138 DEAPTFGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           D +  FG QC  RV +CS+L L ++P AI KD +LL
Sbjct: 100 DASCPFGCQCSARVVQCSDLGLVSVPQAIPKDARLL 135


>tr|Q9DDZ8|Q9DDZ8_PETMA Biglycan-like protein 2 (Fragment)
           OS=Petromyzon marinus GN=BGL2 PE=2 SV=1
          Length = 310

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG QC  RV +CS+L L ++P AI KD +LL
Sbjct: 5   FGCQCSARVVQCSDLGLVSVPQAIPKDARLL 35


>tr|Q6GLQ6|Q6GLQ6_XENLA MGC84390 protein OS=Xenopus laevis GN=bgn
           PE=2 SV=1
          Length = 371

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG QCH+RV +CS+L L ++P  + KD  LL
Sbjct: 68  FGCQCHLRVVQCSDLGLTSVPKNLPKDTTLL 98


>tr|Q865V9|Q865V9_SHEEP Biglycan (Fragment) OS=Ovis aries PE=2 SV=1
          Length = 101

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -1

Query: 156 LPCSFIDEAPTFGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           LP ++    P FG  CH+RV +CS+L L A+P  I+ D  LL
Sbjct: 56  LPPTYSAMCP-FGCHCHLRVVQCSDLGLKAVPKEISPDTTLL 96


>tr|Q6PBP5|Q6PBP5_DANRE Zgc:77123 protein (Fragment) OS=Danio rerio
           GN=zgc:77123 PE=2 SV=1
          Length = 389

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG  C V + +CS+L L A+P  I +D KLL
Sbjct: 86  FGCHCQVNIVQCSDLSLIAVPKEIPRDTKLL 116


>tr|Q6NYY6|Q6NYY6_DANRE Zgc:77123 OS=Danio rerio GN=zgc:77123 PE=2
           SV=1
          Length = 292

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG  C V + +CS+L L A+P  I +D KLL
Sbjct: 69  FGCHCQVNIVQCSDLSLIAVPKEIPRDTKLL 99


>tr|Q5XHD6|Q5XHD6_XENLA LOC495030 protein OS=Xenopus laevis GN=aspn
           PE=2 SV=1
          Length = 379

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG QC++++ +CS+L L ++PN I  D +LL
Sbjct: 76  FGRQCYLKIVQCSDLGLTSIPNKIPYDTRLL 106


>tr|Q4T5R8|Q4T5R8_TETNG Chromosome undetermined SCAF9148, whole
           genome shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00006673001 PE=4 SV=1
          Length = 371

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -1

Query: 123 FGVQCHVRVPKCSNLPLAAMPNAITKDVKLL 31
           FG QCH+RV +CS+L L  +P  I  D K L
Sbjct: 68  FGCQCHLRVVQCSDLGLTEVPPNIPLDTKFL 98