NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915980
Clone id YMU001_000081_D04
Library
Length 404
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCAAAGTTTGGCGAAGGATGCTTACTAGCGGAGTGAACTGTGTGGAGCAATGGAAACGCT
CCTGCATGCTCTACCATCTCATTGCGTGCTCCGACTAACTGATAGCCACAGAAGAGCGTC
ACATCAAAGTCAGCTTCAATCAGTCTATCCTTCACCACCCCCAGTCCTCGTTTACGGCTT
TCCCTTCTCACCTTTCCAAAATTGCTTGCGTGGTGAGCCTGGCCTGGGTCCATCCTCTCT
ACCCCGCGTGGCCCTTGCTTACGAGACGAACACCCCTTACTCGAAATCGCAGTCTCAGAA
AATGGAAATGGGTCTCCTCAACGGAAAAATCAGACCGTGTCCATCCATTGTCAACCCAAA
TTGTATCTCCACATCCTCAATGAATACAACGTATGGAACCCCTT
■■Homology search results ■■ -
sp_hit_id Q9SW33
Definition sp|Q9SW33|TL1Y_ARATH Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana
Align length 56
Score (bit) 50.1
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915980|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_D04.
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SW33|TL1Y_ARATH Thylakoid lumenal 17.9 kDa protein, chlorop...    50   3e-06
sp|P74927|FLIM_TREPA Flagellar motor switch protein fliM OS=Trep...    33   0.57 
sp|O60507|TPST1_HUMAN Protein-tyrosine sulfotransferase 1 OS=Hom...    32   0.75 
sp|Q3KR92|TPST1_RAT Protein-tyrosine sulfotransferase 1 OS=Rattu...    32   1.3  
sp|O70281|TPST1_MOUSE Protein-tyrosine sulfotransferase 1 OS=Mus...    32   1.3  
sp|Q6PDK8|DTX4_MOUSE Protein deltex-4 OS=Mus musculus GN=Dtx4 PE...    31   1.7  
sp|Q28571|THB_SHEEP Thyroid hormone receptor beta (Fragment) OS=...    30   4.8  
sp|A1BI74|MEND_CHLPD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    30   4.8  
sp|Q1RMZ1|CG060_HUMAN UPF0532 protein C7orf60 OS=Homo sapiens GN...    30   4.8  
sp|Q3C1V9|YK041_HUMAN Putative uncharacterized protein ENSP00000...    29   6.3  
sp|O57415|RREB1_CHICK RAS-responsive element-binding protein 1 O...    29   6.3  
sp|Q5KI53|NTE1_CRYNE Lysophospholipase NTE1 OS=Cryptococcus neof...    29   6.3  
sp|Q86V15|CASZ1_HUMAN Zinc finger protein castor homolog 1 OS=Ho...    29   8.2  

>sp|Q9SW33|TL1Y_ARATH Thylakoid lumenal 17.9 kDa protein,
           chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1
           SV=1
          Length = 225

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/56 (41%), Positives = 39/56 (69%)
 Frame = +2

Query: 236 SLPRVALAYETNTPYSKSQSQKMEMGLLNGKIRPCPSIVNPNCISTSSMNTTYGTP 403
           ++P ++ +    TP++  QS+ ++ GLLNGKIRPCPS  NP C+ST+  ++++  P
Sbjct: 63  AIPSLSSSQPLTTPFT--QSKFVQTGLLNGKIRPCPS-TNPGCVSTNPTSSSFSFP 115


>sp|P74927|FLIM_TREPA Flagellar motor switch protein fliM
           OS=Treponema pallidum GN=fliM PE=1 SV=2
          Length = 344

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 200 FGKVRRESRKRGLGVVKDRLIEADFDVTLFCGYQLVGARNEMVEHAGAFPLLHTVH 33
           F  VRR S  + +GV++D+L   D DV    G   +  R+ +    G    LH  H
Sbjct: 235 FSSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTH 290


>sp|O60507|TPST1_HUMAN Protein-tyrosine sulfotransferase 1 OS=Homo
           sapiens GN=TPST1 PE=2 SV=1
          Length = 370

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +3

Query: 9   WRRMLTSGVN-CVEQWKRSCMLYH---LIACSD*LIATEERHIKVSFNQSILHHPQSSFT 176
           W R + +  N C+E   + CML H   L+   +  + T  + +++ +N S+LHH +    
Sbjct: 215 WNRAIETMYNQCMEVGYKKCMLVHYEQLVLHPERWMRTLLKFLQIPWNHSVLHHEEMIGK 274

Query: 177 AFPSHLSKI 203
           A    LSK+
Sbjct: 275 AGGVSLSKV 283


>sp|Q3KR92|TPST1_RAT Protein-tyrosine sulfotransferase 1 OS=Rattus
           norvegicus GN=Tpst1 PE=2 SV=1
          Length = 370

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 9   WRRMLTSGVN-CVEQWKRSCMLYH---LIACSD*LIATEERHIKVSFNQSILHHPQSSFT 176
           W R + +  N C+E   + CML H   L+   +  + T  + + + +N S+LHH +    
Sbjct: 215 WNRAIETMYNQCMEVGYKKCMLVHYEQLVLHPERWMRTLLKFLHIPWNHSVLHHEEMIGK 274

Query: 177 AFPSHLSKI 203
           A    LSK+
Sbjct: 275 AGGVSLSKV 283


>sp|O70281|TPST1_MOUSE Protein-tyrosine sulfotransferase 1 OS=Mus
           musculus GN=Tpst1 PE=2 SV=1
          Length = 370

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 9   WRRMLTSGVN-CVEQWKRSCMLYH---LIACSD*LIATEERHIKVSFNQSILHHPQSSFT 176
           W R + +  N C+E   + CML H   L+   +  + T  + + + +N S+LHH +    
Sbjct: 215 WNRAIETMYNQCMEVGYKKCMLVHYEQLVLHPERWMRTLLKFLHIPWNHSVLHHEEMIGK 274

Query: 177 AFPSHLSKI 203
           A    LSK+
Sbjct: 275 AGGVSLSKV 283


>sp|Q6PDK8|DTX4_MOUSE Protein deltex-4 OS=Mus musculus GN=Dtx4 PE=2
           SV=2
          Length = 616

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
 Frame = +1

Query: 169 RLRLSLL------TFPKLLAW*AWPGSILSTPRGPCLRDEHPL---LEIAVSENGNGSPQ 321
           R RL L+      T PK  +W   PG   S+P  PC   +  L   ++ AV   G G P 
Sbjct: 154 RRRLDLIYPMVTGTMPKTQSWPVSPGPATSSPAPPCSCPQCVLVMSVKAAVVHGGTGPPA 213

Query: 322 -RKNQTVS 342
            RKN  +S
Sbjct: 214 VRKNMALS 221


>sp|Q28571|THB_SHEEP Thyroid hormone receptor beta (Fragment)
           OS=Ovis aries GN=THRB PE=2 SV=1
          Length = 411

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = -1

Query: 305 PFSETAISSKGCSSRKQGPRGVERMDPGQAHHASN--FGKVRRESRKRGLGVVKDRLIEA 132
           P  +  I  KGC       R   R DP       N      RR+ +  GLGVV D + + 
Sbjct: 295 PCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRRQLKNGGLGVVSDAIFDL 354

Query: 131 DFDVTLF 111
              ++ F
Sbjct: 355 GMSLSSF 361


>sp|A1BI74|MEND_CHLPD
           2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
           carboxylate synthase OS=Chlorobium phaeobacteroides
           (strain DSM 266) GN=menD PE=3 SV=1
          Length = 587

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 226 GSILSTPRGPCLRDEHPLLEIAVSENGNGSPQRKNQTVSIHCQPKLYLHIL 378
           G ++S   G  +R  HP   + V  + N      N T+SI   PKL+   L
Sbjct: 297 GQLISRHPGAAIRVSHPGNYLVVKPSANRYAPDHNVTLSIEASPKLFADAL 347


>sp|Q1RMZ1|CG060_HUMAN UPF0532 protein C7orf60 OS=Homo sapiens
           GN=C7orf60 PE=2 SV=1
          Length = 405

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 215 EPGLGPSSLPRVALAYETNTPYSKSQSQKMEMGLLNGKIR 334
           EPG G  +  R   A   NTP  + Q +K+E   L+G ++
Sbjct: 2   EPGAGGRNTARAQRAGSPNTPPPREQERKLEQEKLSGVVK 41


>sp|Q3C1V9|YK041_HUMAN Putative uncharacterized protein
           ENSP00000334305 OS=Homo sapiens PE=5 SV=2
          Length = 767

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -1

Query: 302 FSETAISSKGCSSRKQGPRGVERMDPGQAHHASNFGKVRRESRKRGLGVVKDRLIEADFD 123
           F +       C S+++G  GVE  D  QAH         R+ R    GV+  RL +    
Sbjct: 532 FRDHGPPGSSCRSQRKG-NGVETKD--QAHR-------NRDPRGFQGGVLTARLFKMQVS 581

Query: 122 VTLFCGYQ 99
           + LFCG+Q
Sbjct: 582 LELFCGHQ 589
tr_hit_id A7PHJ1
Definition tr|A7PHJ1|A7PHJ1_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera
Align length 44
Score (bit) 49.7
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915980|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_D04.
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PHJ1|A7PHJ1_VITVI Chromosome chr17 scaffold_16, whole genom...    50   7e-05
tr|A5AWU5|A5AWU5_VITVI Putative uncharacterized protein OS=Vitis...    50   7e-05
tr|B4FA02|B4FA02_MAIZE Putative uncharacterized protein OS=Zea m...    46   8e-04
tr|A9SQ83|A9SQ83_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|Q94CX1|Q94CX1_ORYSJ P0402A09.21 protein (Putative uncharacter...    39   0.10 
tr|A2WJM6|A2WJM6_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.10 
tr|Q4P0E0|Q4P0E0_USTMA Putative uncharacterized protein OS=Ustil...    37   0.50 
tr|B4S4Z4|B4S4Z4_PROA2 Putative uncharacterized protein OS=Prost...    35   1.5  
tr|B2EUU0|B2EUU0_9BACT Putative uncharacterized protein OS=bacte...    35   2.5  
tr|B8BVN5|B8BVN5_THAPS Putative uncharacterized protein OS=Thala...    35   2.5  
tr|Q5KDR6|Q5KDR6_CRYNE Putative uncharacterized protein OS=Crypt...    34   4.2  
tr|Q55PP1|Q55PP1_CRYNE Putative uncharacterized protein OS=Crypt...    34   4.2  
tr|A8WNQ9|A8WNQ9_CAEBR Putative uncharacterized protein (Fragmen...    33   5.5  
tr|Q4YVL4|Q4YVL4_PLABE Putative uncharacterized protein (Fragmen...    33   7.2  
tr|B2S3W0|B2S3W0_TREPS Flagellar motor switch protein OS=Trepone...    33   9.4  
tr|A6E5I4|A6E5I4_9RHOB ParB-like partition protein OS=Roseovariu...    33   9.4  
tr|Q08DH2|Q08DH2_BOVIN Tyrosylprotein sulfotransferase 1 OS=Bos ...    33   9.4  

>tr|A7PHJ1|A7PHJ1_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017961001
           PE=4 SV=1
          Length = 226

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 23/44 (52%), Positives = 34/44 (77%)
 Frame = +2

Query: 272 TPYSKSQSQKMEMGLLNGKIRPCPSIVNPNCISTSSMNTTYGTP 403
           TP+S  QS+ +++GL NGKIRPCPSI NP C+ST+  ++++  P
Sbjct: 77  TPFS--QSKNLQVGLENGKIRPCPSI-NPGCVSTNPKSSSFAFP 117


>tr|A5AWU5|A5AWU5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001274 PE=4 SV=1
          Length = 786

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 23/44 (52%), Positives = 34/44 (77%)
 Frame = +2

Query: 272 TPYSKSQSQKMEMGLLNGKIRPCPSIVNPNCISTSSMNTTYGTP 403
           TP+S  QS+ +++GL NGKIRPCPSI NP C+ST+  ++++  P
Sbjct: 77  TPFS--QSKNLQVGLENGKIRPCPSI-NPGCVSTNPKSSSFAFP 117


>tr|B4FA02|B4FA02_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 245

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +2

Query: 218 PGLGPSSLPRVALAYETNTPYSKSQSQKMEMGLLN-GKIRPCPSIVNPNCISTSSMNTT 391
           P + P   P     + ++TPY+  QSQK+++GL   GKIRPCPS  NP C+ST+ + ++
Sbjct: 62  PFVRPPPPPLQGRPFASSTPYA--QSQKLQLGLDKLGKIRPCPS-TNPGCVSTNPLGSS 117


>tr|A9SQ83|A9SQ83_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82453 PE=4 SV=1
          Length = 304

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 263 ETNTPYSKSQSQKMEMGLLNGKIRPCPSIVNPNCISTSSMNTTYGTP 403
           E+   +  S+      G +  +IR CP  +NPNC+STSS N  Y  P
Sbjct: 137 ESEWIFKNSRDGSFSSGWVARRIRACPLDINPNCVSTSSSNQAYAFP 183


>tr|Q94CX1|Q94CX1_ORYSJ P0402A09.21 protein (Putative
           uncharacterized protein) (Os01g0102300 protein)
           (Putative uncharacterized protein P0672D08.41)
           (P0455C04.15 protein) OS=Oryza sativa subsp. japonica
           GN=P0402A09.21 PE=4 SV=1
          Length = 257

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
 Frame = +2

Query: 269 NTPYSKSQSQKMEMGL-LNGKIRPCPSIVNPNCISTS 376
           +TPYS+SQSQ+ + GL   G+IR CPS  NP C+ST+
Sbjct: 84  STPYSQSQSQQ-QFGLDAKGRIRACPS-TNPGCVSTN 118


>tr|A2WJM6|A2WJM6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00021 PE=4 SV=1
          Length = 257

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
 Frame = +2

Query: 269 NTPYSKSQSQKMEMGL-LNGKIRPCPSIVNPNCISTS 376
           +TPYS+SQSQ+ + GL   G+IR CPS  NP C+ST+
Sbjct: 84  STPYSQSQSQQ-QFGLDAKGRIRACPS-TNPGCVSTN 118


>tr|Q4P0E0|Q4P0E0_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM06423.1 PE=3 SV=1
          Length = 640

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +1

Query: 58  APACSTISLRAPTN**PQKSVTSKSASISLSFTTPSPRLRLSLLTFP 198
           A A  ++S + P+N  P KS+ S S S+ LS + PSP L +S   FP
Sbjct: 586 ALAAYSVSFKRPSN--PHKSIASSSVSLCLSHSRPSPFLSMSQSLFP 630


>tr|B4S4Z4|B4S4Z4_PROA2 Putative uncharacterized protein
           OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
           GN=Paes_0435 PE=4 SV=1
          Length = 151

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 311 GLLNGKIRPCPSIVNPNCISTSSMNTTYGTP 403
           GLLNGK+RPCP    PNC+ + + N     P
Sbjct: 27  GLLNGKLRPCPG--TPNCLCSETSNEAERVP 55


>tr|B2EUU0|B2EUU0_9BACT Putative uncharacterized protein
           OS=bacterium Ellin514 GN=CflavDRAFT_6017 PE=4 SV=1
          Length = 131

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +2

Query: 281 SKSQSQKMEMGLLNGKIRPCPSIVNPNC 364
           S S SQ   +GL++GK+RPCP   +PNC
Sbjct: 2   SSSSSQLKPVGLIDGKLRPCPD--SPNC 27


>tr|B8BVN5|B8BVN5_THAPS Putative uncharacterized protein
           OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_39696
           PE=4 SV=1
          Length = 622

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -1

Query: 167 GLGVVKDRLIEADFDVTLFCGYQLVGAR--NEMVEHAGAFPLLHTVHSASKHPS 12
           GL  + D+L + +F     CG  L  +R   ++++H G+F ++H+V +A   PS
Sbjct: 280 GLEKMSDKLAQVNFLTLCACGTSLNASRYAEKLMKHLGSFDVVHSVDAAEVEPS 333