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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915984
Clone id YMU001_000081_D11
Library
Length 365
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGAAGAAATTCGCGGCCGCAGGAATTTTTTATTATCCTTTATTAAAATCCTGACTTTG
GCCTCCTCCTGCTCTTGAGCTTTTGTTTCTTTTTGCTTTGTTCTTGCGTCTCTTCGCAGT
GTGTATTTTGGCAAGTATCTCTGTGGTTAGTGGTAAGTTATATTTCTTTAGTCTGAAACC
ACTAATCCAGTTAGGCATTTCCTCTCCCTCTAATGTCGCAAGTTTGATGGCACCGCTAGA
TGATATGCCATGAATCACATAGGGTCCATTTCCTCGCTTATTGAGTTTCCGGGAATGTTG
TTCAAGGGTATACATTAAGACATAATCCCCATTAGCAAATTCCTTGTTGATAACATGTTG
ATCAA
■■Homology search results ■■ -
sp_hit_id Q3IJ93
Definition sp|Q3IJ93|SYL_PSEHT Leucyl-tRNA synthetase OS=Pseudoalteromonas haloplanktis (strain TAC 125)
Align length 67
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915984|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_D11.
         (333 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3IJ93|SYL_PSEHT Leucyl-tRNA synthetase OS=Pseudoalteromonas ...    31   1.7  
sp|Q8WQ85|VILD_DICDI Villidin OS=Dictyostelium discoideum GN=vil...    29   6.4  
sp|P54296|MYOM2_HUMAN Myomesin-2 OS=Homo sapiens GN=MYOM2 PE=2 SV=2    29   6.4  

>sp|Q3IJ93|SYL_PSEHT Leucyl-tRNA synthetase OS=Pseudoalteromonas
           haloplanktis (strain TAC 125) GN=leuS PE=3 SV=1
          Length = 862

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 325 HVINKEFA-NGDYVLMYTLEQHSRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPNWIS 149
           H I KE A N D V ++  E  + K+++         GI++ G      L GE++P WI+
Sbjct: 265 HPIAKEAAKNSDSVALFVEECKNNKVSEADMATMEKKGIAT-GFFATHPLTGEQVPIWIA 323

Query: 148 GFRLKKY 128
            F L  Y
Sbjct: 324 NFVLMHY 330


>sp|Q8WQ85|VILD_DICDI Villidin OS=Dictyostelium discoideum GN=vilA
            PE=1 SV=2
          Length = 1704

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 22/90 (24%)
 Frame = -3

Query: 328  QHVINKEFANGDYVLMYTLEQHSRK-------------LNKRGNGPYVIHGISSS---GA 197
            QH+ ++ F++  Y+++YT  Q++++             +N++G   Y+   ++ S     
Sbjct: 1310 QHLYSQFFSSDSYIVLYTYMQNNKEAHVIYYYLGRDSSINEKGTSAYLTVDLNESLVGAC 1369

Query: 196  IKLATLEGEEMPNWISGFRLK------KYN 125
            ++   +  +E  N+++ F+ K      KYN
Sbjct: 1370 VQTRVVANKECKNFLNLFKTKMVIHKGKYN 1399


>sp|P54296|MYOM2_HUMAN Myomesin-2 OS=Homo sapiens GN=MYOM2 PE=2 SV=2
          Length = 1465

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 87  VCILASISVVSGKLYFFSLKPLIQLGISSPSNVASLMAPLDDM 215
           +C      +  G+ Y F ++ +   GIS PS V+  +A LD +
Sbjct: 439 ICKYPVTGLFEGRSYIFRVRAVNSAGISRPSRVSDAVAALDPL 481
tr_hit_id A5ATE1
Definition tr|A5ATE1|A5ATE1_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 77
Score (bit) 55.1
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915984|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_D11.
         (333 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5ATE1|A5ATE1_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|A5BWA0|A5BWA0_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5BT10|A5BT10_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5BIH2|A5BIH2_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5AY46|A5AY46_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5AQ91|A5AQ91_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5ALH1|A5ALH1_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5BYP9|A5BYP9_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5B1X1|A5B1X1_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5BP37|A5BP37_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5B9T7|A5B9T7_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5B574|A5B574_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5B4W1|A5B4W1_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5AUV9|A5AUV9_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5AQU2|A5AQU2_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A5C4V6|A5C4V6_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5BSR6|A5BSR6_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5B6T1|A5B6T1_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5B5I2|A5B5I2_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5B595|A5B595_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5AVP3|A5AVP3_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5AVD9|A5AVD9_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5C706|A5C706_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5C1S6|A5C1S6_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5BJ75|A5BJ75_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5BA02|A5BA02_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5B1Q2|A5B1Q2_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5AWA9|A5AWA9_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5AVQ5|A5AVQ5_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A5AUW6|A5AUW6_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05

>tr|A5ATE1|A5ATE1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_024904 PE=4 SV=1
          Length = 1643

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331  DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
            DQ + NKEF  G  VLMY    H   RKL  R  GP++IH + S+G ++L    G++   
Sbjct: 1556 DQLISNKEFQEGQRVLMYDTRLHIFPRKLKSRWIGPFIIHRVWSNGVVELLNSNGKDSFK 1615

Query: 157  WISGFRLKKYNLPLTTE 107
             ++G+RLK +  P  +E
Sbjct: 1616 -VNGYRLKPFMEPFKSE 1631


>tr|A5BWA0|A5BWA0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_000420 PE=4 SV=1
          Length = 1731

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331  DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
            DQ + NKEF  G  VLMY    H    KL  R  GP+VIH + S+G + L    G++   
Sbjct: 1644 DQLISNKEFQEGQKVLMYDTRLHIFRGKLKSRWIGPFVIHRVYSNGVVDLLNSNGKDSFR 1703

Query: 157  WISGFRLKKYNLPLTTE 107
             ++G+RLK +  P  +E
Sbjct: 1704 -VNGYRLKPFMEPFKSE 1719


>tr|A5BT10|A5BT10_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_018297 PE=4 SV=1
          Length = 1788

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331  DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
            DQ + NKEF  G  VLMY    H    KL  R  GP++IH + S+G ++L    G++   
Sbjct: 1700 DQLISNKEFQEGQRVLMYDTRLHIFPGKLKSRWIGPFIIHRVWSNGVVELLNSNGKDSFK 1759

Query: 157  WISGFRLKKYNLPLTTE 107
             ++G+RLK +  P  +E
Sbjct: 1760 -VNGYRLKPFMEPFKSE 1775


>tr|A5BIH2|A5BIH2_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_014771 PE=4 SV=1
          Length = 1535

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331  DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
            DQ + NKEF  G  VLMY    H    KL  R  GP++IH + S+G ++L    G++   
Sbjct: 1448 DQLISNKEFQEGQRVLMYDTRLHIFPGKLKSRWIGPFIIHRVWSNGVVELLNSNGKDSFK 1507

Query: 157  WISGFRLKKYNLPLTTE 107
             ++G+RLK +  P  +E
Sbjct: 1508 -VNGYRLKPFMEPFKSE 1523


>tr|A5AY46|A5AY46_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_030527 PE=4 SV=1
          Length = 1803

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331  DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
            DQ + NKEF  G  VLMY    H    KL  R  GP+VIH + S+G + L    G++   
Sbjct: 1716 DQLISNKEFQEGQKVLMYDTRLHIFPGKLKSRWIGPFVIHRVYSNGVVDLLNSNGKDSFR 1775

Query: 157  WISGFRLKKYNLPLTTE 107
             ++G+RLK +  P  +E
Sbjct: 1776 -VNGYRLKPFMEPFKSE 1791


>tr|A5AQ91|A5AQ91_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002840 PE=4 SV=1
          Length = 436

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331 DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
           DQ + NKEF  G  VLMY    H    KL  R  GP+VIH + S+G + L    G++   
Sbjct: 349 DQLISNKEFQEGQKVLMYDTRLHIFPGKLKSRWIGPFVIHRVYSNGVVDLLNSNGKDSFR 408

Query: 157 WISGFRLKKYNLPLTTE 107
            ++G+RLK +  P  +E
Sbjct: 409 -VNGYRLKPFMEPFKSE 424


>tr|A5ALH1|A5ALH1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027792 PE=4 SV=1
          Length = 1707

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331  DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
            DQ + NKEF  G  VLMY    H    KL  R  GP++IH + S+G ++L    G++   
Sbjct: 1620 DQLISNKEFQEGQRVLMYDTRLHIFPGKLKSRWIGPFIIHRVWSNGVVELLNSNGKDSFK 1679

Query: 157  WISGFRLKKYNLPLTTE 107
             ++G+RLK +  P  +E
Sbjct: 1680 -VNGYRLKPFMEPFKSE 1695


>tr|A5BYP9|A5BYP9_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_018582 PE=4 SV=1
          Length = 1429

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331  DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
            DQ + NKEF  G  VLMY    H    KL  R  GP++IH + S+G + L    G++   
Sbjct: 1342 DQLISNKEFQEGQRVLMYDTRLHIFPGKLKSRWIGPFIIHRVWSNGVVNLLNSNGKDSFR 1401

Query: 157  WISGFRLKKYNLPLTTE 107
             ++G+RLK +  P  +E
Sbjct: 1402 -VNGYRLKPFMEPFKSE 1417


>tr|A5B1X1|A5B1X1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_012575 PE=4 SV=1
          Length = 1956

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331  DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
            DQ + NKEF  G  VLMY    H    KL  R  GP++IH + S+G ++L    G++   
Sbjct: 1869 DQLISNKEFQEGQRVLMYNTRLHIFPGKLKSRWIGPFIIHRVWSNGVVELLNSNGKDSFK 1928

Query: 157  WISGFRLKKYNLPLTTE 107
             ++G+RLK +  P   E
Sbjct: 1929 -VNGYRLKPFMEPFKLE 1944


>tr|A5BP37|A5BP37_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_015140 PE=4 SV=1
          Length = 1918

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -3

Query: 331  DQHVINKEFANGDYVLMYTLEQH--SRKLNKRGNGPYVIHGISSSGAIKLATLEGEEMPN 158
            DQ + NKEF  G  VL+Y    H    KL  R  GP+VIH + S+G ++L    G++   
Sbjct: 1791 DQLISNKEFQEGQKVLIYDTRLHIFPGKLKSRWIGPFVIHRVYSNGVVELLNSNGKDSFK 1850

Query: 157  WISGFRLKKYNLPLTTE 107
             ++G+RLK +  P  +E
Sbjct: 1851 -VNGYRLKPFMEPFKSE 1866