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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915985
Clone id YMU001_000081_D12
Library
Length 155
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATACCTCTCAACTGATACATCGCAACCATTGTGTAGGATCAATGAGCCTCTCCATTATC
TCATCTCTCAGTGCCTTGGGCACGTGGGAGCTCTATGGCCTGACTCATTGCAAATGAAGC
ACAGTTGCTGAGACCTCTGGTAACCTCCTCCATTG
■■Homology search results ■■ -
sp_hit_id P34689
Definition sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans
Align length 25
Score (bit) 32.7
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915985|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_D12.
         (155 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorh...    33   0.59 
sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago may...    32   1.00 
sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3 OS=Ara...    32   1.3  
sp|Q5KMN5|YTH1_CRYNE mRNA 3'-end-processing protein YTH1 OS=Cryp...    31   1.7  
sp|P31622|GAG_JSRV Gag polyprotein OS=Sheep pulmonary adenomatos...    31   1.7  
sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thal...    31   2.2  
sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3 OS=Ory...    30   2.9  
sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces c...    30   5.0  
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorh...    29   6.5  
sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Usti...    29   8.5  

>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1
           OS=Caenorhabditis elegans GN=glh-1 PE=1 SV=3
          Length = 763

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 151 GGGYQRSQQLCFICNESGHRAPTCP 77
           GGG +R    CF C   GHR+  CP
Sbjct: 234 GGGEERGPMKCFNCKGEGHRSAECP 258


>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis
           GN=BBP PE=3 SV=1
          Length = 625

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -2

Query: 154 NGGGYQRSQQLCFICNESGHRAPTCPRH*EMR*WRGSLILH 32
           NG       QLC  C   GHRA  CP   E R W   +I H
Sbjct: 359 NGTLRDDENQLCKNCGNKGHRAFECP---EQRNWTAHIICH 396


>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3
           OS=Arabidopsis thaliana GN=RH3 PE=2 SV=2
          Length = 748

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 121 CFICNESGHRAPTCP 77
           CFIC +SGHRA  CP
Sbjct: 729 CFICGKSGHRATDCP 743


>sp|Q5KMN5|YTH1_CRYNE mRNA 3'-end-processing protein YTH1
           OS=Cryptococcus neoformans GN=YTH1 PE=3 SV=1
          Length = 332

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 148 GGYQR--SQQLCFICNESGHRAPTCP 77
           GG+Q+  S  LCF CN+ GH A  CP
Sbjct: 292 GGWQKDLSTVLCFRCNQYGHFANNCP 317


>sp|P31622|GAG_JSRV Gag polyprotein OS=Sheep pulmonary adenomatosis
           virus GN=gag PE=4 SV=1
          Length = 612

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 154 NGGGYQRSQQL-CFICNESGHRAPTCPR 74
           N  G Q+S    CF+C + GHRA  CP+
Sbjct: 497 NKKGLQKSGNSGCFVCGQPGHRAAVCPQ 524


>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis
           thaliana GN=XRN4 PE=2 SV=1
          Length = 947

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 142 YQRSQQLCFICNESGHRAPTCP 77
           Y   Q+ CF+C ++GH A  CP
Sbjct: 258 YPGQQEKCFVCGQTGHFASDCP 279


>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3 OS=Oryza
           sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
          Length = 758

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 121 CFICNESGHRAPTCP 77
           CF C ESGHRA  CP
Sbjct: 742 CFNCGESGHRASDCP 756


>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces
           cerevisiae GN=GIS2 PE=1 SV=1
          Length = 153

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 136 RSQQLCFICNESGHRAPTCPR 74
           ++ +LC+ CNE+GH +  CP+
Sbjct: 132 QNDRLCYNCNETGHISKDCPK 152


>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2
           OS=Caenorhabditis elegans GN=glh-2 PE=1 SV=1
          Length = 974

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 151 GGGYQRSQQL--CFICNESGHRAPTCP 77
           GGG  R ++   CF C + GHR+  CP
Sbjct: 247 GGGQDRGERNNNCFNCQQPGHRSNDCP 273



 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 151 GGGYQRSQQL--CFICNESGHRAPTCP 77
           GGG  R ++   CF C + GHR+  CP
Sbjct: 361 GGGQDRGERNNNCFNCQQPGHRSNDCP 387


>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1
           OS=Ustilago maydis GN=YTH1 PE=3 SV=1
          Length = 366

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 151 GGGYQR--SQQLCFICNESGHRAPTCP 77
           G G+++  S+ LCF C E GH A  CP
Sbjct: 311 GRGWRKDLSEVLCFKCGEMGHFANMCP 337
tr_hit_id Q8T8R1
Definition tr|Q8T8R1|Q8T8R1_DROME CG3800 OS=Drosophila melanogaster
Align length 30
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915985|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_D12.
         (155 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8T8R1|Q8T8R1_DROME CG3800 OS=Drosophila melanogaster GN=CG38...    35   1.4  
tr|Q4D1V7|Q4D1V7_TRYCR RNA helicase, putative OS=Trypanosoma cru...    35   2.5  
tr|Q55HB3|Q55HB3_CRYNE Putative uncharacterized protein OS=Crypt...    35   2.5  
tr|Q9LYA7|Q9LYA7_ARATH Protoporphyrinogen oxidase-like protein O...    34   3.2  
tr|Q9FMS9|Q9FMS9_ARATH Protoporphyrinogen IX oxidase OS=Arabidop...    34   3.2  
tr|Q8S9J1|Q8S9J1_ARATH AT5g14220/MUA22_22 OS=Arabidopsis thalian...    34   3.2  
tr|A9LHN2|A9LHN2_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              34   3.2  
tr|Q9TTD5|Q9TTD5_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              33   5.5  
tr|A9LHM0|A9LHM0_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              33   5.5  
tr|A9LHI8|A9LHI8_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              33   5.5  
tr|Q4E420|Q4E420_TRYCR RNA helicase, putative (Fragment) OS=Tryp...    33   7.2  

>tr|Q8T8R1|Q8T8R1_DROME CG3800 OS=Drosophila melanogaster GN=CG3800
           PE=1 SV=1
          Length = 165

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 154 NGGGYQRSQQLCFICNESGHRAPTCPRH*E 65
           +GGG +R+++ C+ CN+ GH A  CP   E
Sbjct: 46  DGGGMRRNREKCYKCNQFGHFARACPEEAE 75


>tr|Q4D1V7|Q4D1V7_TRYCR RNA helicase, putative OS=Trypanosoma cruzi
            GN=Tc00.1047053511481.60 PE=4 SV=1
          Length = 1294

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 139  QRSQQLCFICNESGHRAPTCPR 74
            +R+QQ CF+C E+ H A +CPR
Sbjct: 1241 RRTQQRCFVCGETDHMARSCPR 1262


>tr|Q55HB3|Q55HB3_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBN2020 PE=4 SV=1
          Length = 908

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 133 SQQLCFICNESGHRAPTCPRH*E 65
           S+Q CF+C + GH++P CP+  E
Sbjct: 317 SEQRCFLCRQPGHKSPDCPKRKE 339


>tr|Q9LYA7|Q9LYA7_ARATH Protoporphyrinogen oxidase-like protein
           OS=Arabidopsis thaliana GN=F18O22_10 PE=4 SV=1
          Length = 501

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  EPLHYLISQCLGHVGALWPDSLQMKHSC*DLW 140
           E + YLI   +G   A  PDSL MKHS  DLW
Sbjct: 167 EVVDYLIDPFVGGTSAADPDSLSMKHSFPDLW 198


>tr|Q9FMS9|Q9FMS9_ARATH Protoporphyrinogen IX oxidase OS=Arabidopsis
           thaliana PE=4 SV=1
          Length = 547

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  EPLHYLISQCLGHVGALWPDSLQMKHSC*DLW 140
           E + YLI   +G   A  PDSL MKHS  DLW
Sbjct: 213 EVVDYLIDPFVGGTSAADPDSLSMKHSFPDLW 244


>tr|Q8S9J1|Q8S9J1_ARATH AT5g14220/MUA22_22 OS=Arabidopsis thaliana
           GN=At5g14220 PE=2 SV=1
          Length = 508

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  EPLHYLISQCLGHVGALWPDSLQMKHSC*DLW 140
           E + YLI   +G   A  PDSL MKHS  DLW
Sbjct: 167 EVVDYLIDPFVGGTSAADPDSLSMKHSFPDLW 198


>tr|A9LHN2|A9LHN2_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1
          Length = 616

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 154 NGGGYQRSQQL-CFICNESGHRAPTCPR 74
           N  GYQ+S    CF+C + GHRA  CP+
Sbjct: 501 NKKGYQKSGNSGCFVCGQPGHRAAVCPQ 528


>tr|Q9TTD5|Q9TTD5_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1
          Length = 616

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 154 NGGGYQRSQQL-CFICNESGHRAPTCPR 74
           N  G Q+S  L CF+C + GHRA  CP+
Sbjct: 501 NKKGLQKSGNLGCFVCGQPGHRAAVCPQ 528


>tr|A9LHM0|A9LHM0_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1
          Length = 616

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 154 NGGGYQRSQQL-CFICNESGHRAPTCPR 74
           N  G Q+S  L CF+C + GHRA  CP+
Sbjct: 501 NKKGLQKSGNLGCFVCGQPGHRAAVCPQ 528


>tr|A9LHI8|A9LHI8_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1
          Length = 616

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 154 NGGGYQRSQQL-CFICNESGHRAPTCPR 74
           N  G Q+S  L CF+C + GHRA  CP+
Sbjct: 501 NKKGLQKSGNLGCFVCGQPGHRAAVCPQ 528