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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915986
Clone id YMU001_000081_E03
Library
Length 204
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCGCAATCCTTTGATATAGTAAAATCCTTGTCTTCGTGCCCATATTTTTCGCATAAGTGG
AAATAAGCTCGAAGGGGACAGTCCTGTGGAGGATGTCCAGGAGAGCGACAAGAGTTGCAC
CATACCGGAGCTTTAGTCTCCTGCTGAGACCCAAGCTCTTCTGGTTCTCTCTTGATTTGA
TCCAAAGCCTCAAGGTGCCATGGT
■■Homology search results ■■ -
sp_hit_id P16900
Definition sp|P16900|GAG_OMVVS Gag polyprotein OS=Ovine maedi visna related virus (strain South Africa)
Align length 57
Score (bit) 35.0
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915986|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_E03.
         (204 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16900|GAG_OMVVS Gag polyprotein OS=Ovine maedi visna related...    35   0.12 
sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyosteliu...    34   0.26 
sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encepha...    32   0.76 
sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain...    32   1.3  
sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain...    32   1.3  
sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain...    32   1.3  
sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain ...    32   1.3  
sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein...    31   1.7  
sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein...    31   1.7  
sp|Q8R316|HBP1_MOUSE HMG box-containing protein 1 OS=Mus musculu...    30   3.8  
sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glab...    30   3.8  
sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficienc...    29   6.4  
sp|Q79665|GAG_HV1MV Gag polyprotein OS=Human immunodeficiency vi...    29   6.4  
sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homol...    29   6.4  
sp|A5FZ95|FPG_ACICJ Formamidopyrimidine-DNA glycosylase OS=Acidi...    29   8.4  
sp|Q6ZST2|ZCH23_HUMAN Zinc finger CCHC domain-containing protein...    29   8.4  
sp|P79065|TIP1_SCHPO Tip elongation protein 1 OS=Schizosaccharom...    29   8.4  
sp|Q2GEP2|SYA_NEOSM Alanyl-tRNA synthetase OS=Neorickettsia senn...    29   8.4  
sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces c...    29   8.4  

>sp|P16900|GAG_OMVVS Gag polyprotein OS=Ovine maedi visna related
           virus (strain South Africa) GN=gag PE=3 SV=1
          Length = 446

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = -2

Query: 194 LEALDQIKREPEELGSQQETKAPVWCNSCRSPGHPPQDCPLRAYFHLCEKYGHEDKD 24
           ++ L Q  R P + G Q   K    C  C  PGH  + C      H C K GH  KD
Sbjct: 365 MQLLAQALRPPRKEGKQGVQK----CYYCGKPGHLARQCRQGIICHHCGKRGHMQKD 417


>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium
           discoideum GN=sf1 PE=3 SV=1
          Length = 501

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 176 IKREPEELGSQQETKAPVWCNSCRSPGHPPQDCPLRA 66
           ++  P  +G++  T   + C  C    HP  DCPLR+
Sbjct: 290 LRERPAYMGNRSWTPVDIKCVQCGETSHPSSDCPLRS 326


>sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis
           encephalitis virus (strain Cork) GN=gag PE=4 SV=1
          Length = 441

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -2

Query: 194 LEALDQIKREPEELGSQQETKAPVWCNSCRSPGHPPQDCPLRAYFHLCEKYGHEDKDFTI 15
           ++ L Q  R  +  G+ Q    P  C +C  PGH  + C      H C K GH  K+   
Sbjct: 360 MQLLAQALRPGKGKGNGQ----PQRCYNCGKPGHQARQCRQGIICHNCGKRGHMQKECRG 415

Query: 14  SKD 6
            +D
Sbjct: 416 KRD 418


>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain
           KV1772) GN=gag PE=3 SV=1
          Length = 442

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 119 CNSCRSPGHPPQDCPLRAYFHLCEKYGHEDKD 24
           C +C  PGH  + C      H C K GH  KD
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKD 418


>sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain
           1514 / clone LV1-1KS2) GN=gag PE=3 SV=1
          Length = 442

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 119 CNSCRSPGHPPQDCPLRAYFHLCEKYGHEDKD 24
           C +C  PGH  + C      H C K GH  KD
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKD 418


>sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain
           1514 / clone LV1-1KS1) GN=gag PE=3 SV=1
          Length = 442

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 119 CNSCRSPGHPPQDCPLRAYFHLCEKYGHEDKD 24
           C +C  PGH  + C      H C K GH  KD
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKD 418


>sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain
           1514) GN=gag PE=3 SV=1
          Length = 442

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 119 CNSCRSPGHPPQDCPLRAYFHLCEKYGHEDKD 24
           C +C  PGH  + C      H C K GH  KD
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKD 418


>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9
           OS=Mus musculus GN=Zcchc9 PE=2 SV=1
          Length = 273

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 173 KREPEELGSQQETKAPVWCNSCRSPGHPPQDCP 75
           +RE   L  Q   K  + C  CR PGH   DCP
Sbjct: 112 RREGRRLKRQAAKKNAMVCFHCRQPGHGIADCP 144


>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9
           OS=Homo sapiens GN=ZCCHC9 PE=2 SV=2
          Length = 271

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 173 KREPEELGSQQETKAPVWCNSCRSPGHPPQDCP 75
           +RE   L  Q   K  + C  CR PGH   DCP
Sbjct: 112 RREGRRLKRQAAKKNAMVCFHCRKPGHGIADCP 144


>sp|Q8R316|HBP1_MOUSE HMG box-containing protein 1 OS=Mus musculus
           GN=Hbp1 PE=1 SV=1
          Length = 516

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +1

Query: 4   QSFDIVKSLSSCPYFSHKWK*ARRGQ-SCGGCPGERQELHHTGALVSC*DPSSS--GSLL 174
           +S+D     SS  Y        RR   SCGG PG  QE   +    SC  P SS   S  
Sbjct: 355 KSYDFTPMDSSAVYVLSSMARQRRASLSCGGGPGTGQEFSGSEFSKSCGSPGSSQLSSSS 414

Query: 175 I*SKASRCH 201
           + +KA + H
Sbjct: 415 LYAKAVKSH 423
tr_hit_id Q6ZG47
Definition tr|Q6ZG47|Q6ZG47_ORYSJ Putative uncharacterized protein OJ1111_E05.15 OS=Oryza sativa subsp. japonica
Align length 75
Score (bit) 42.4
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915986|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_E03.
         (204 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6ZG47|Q6ZG47_ORYSJ Putative uncharacterized protein OJ1111_E...    42   0.012
tr|B8BBV2|B8BBV2_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.012
tr|A9SH37|A9SH37_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.098
tr|A9U2C4|A9U2C4_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.29 
tr|A9TYI1|A9TYI1_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.29 
tr|A9TCA6|A9TCA6_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.29 
tr|A9T8D2|A9T8D2_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.29 
tr|A9S3P6|A9S3P6_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.29 
tr|A7P7X8|A7P7X8_VITVI Chromosome chr3 scaffold_8, whole genome ...    38   0.29 
tr|Q6SP50|Q6SP50_9RETR Gag polyprotein (Fragment) OS=Small rumin...    37   0.37 
tr|A9U4U9|A9U4U9_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.37 
tr|A9U0L3|A9U0L3_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.37 
tr|A9TWR6|A9TWR6_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.37 
tr|A9TIH4|A9TIH4_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.37 
tr|Q9AV38|Q9AV38_ORYSJ Os10g0545300 protein OS=Oryza sativa subs...    37   0.64 
tr|Q6EIC6|Q6EIC6_HYAOR Putative zinc finger protein OS=Hyacinthu...    37   0.64 
tr|Q677E2|Q677E2_HYAOR Ring zinc finger protein (Fragment) OS=Hy...    37   0.64 
tr|A9RE89|A9RE89_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.64 
tr|A5C1C7|A5C1C7_VITVI Putative uncharacterized protein OS=Vitis...    37   0.64 
tr|A2Z9X0|A2Z9X0_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.64 
tr|A9U5Y7|A9U5Y7_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.83 
tr|A9T841|A9T841_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.83 
tr|A9RW19|A9RW19_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.83 
tr|Q28EP6|Q28EP6_XENTR Novel protein OS=Xenopus tropicalis GN=TG...    36   1.1  
tr|A8XFS8|A8XFS8_CAEBR CBR-GLH-1 protein OS=Caenorhabditis brigg...    36   1.1  
tr|B4FLG4|B4FLG4_MAIZE DNA-binding protein HEXBP OS=Zea mays PE=...    35   1.4  
tr|B4FKN3|B4FKN3_MAIZE DNA-binding protein HEXBP OS=Zea mays PE=...    35   1.4  
tr|Q6SP31|Q6SP31_9RETR Gag polyprotein (Fragment) OS=Small rumin...    35   1.9  
tr|Q6SP14|Q6SP14_9RETR Gag polyprotein (Fragment) OS=Small rumin...    35   1.9  
tr|A9NU66|A9NU66_PICSI Putative uncharacterized protein OS=Picea...    35   1.9  

>tr|Q6ZG47|Q6ZG47_ORYSJ Putative uncharacterized protein
           OJ1111_E05.15 OS=Oryza sativa subsp. japonica
           GN=OJ1111_E05.15 PE=4 SV=1
          Length = 468

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
 Frame = -2

Query: 197 HLEALDQIKREPEELGSQQETKAPV------------WCNSCRSPGHPPQDCPLRAYFHL 54
           ++EA+   +++ EE  ++ +TK  V            WC  CRS GH  +DC +R Y  +
Sbjct: 119 NVEAMLNKEKKSEESKTEGDTKGVVKDGVDKGAQIRKWCGKCRSMGHIAKDCVVRKYCVI 178

Query: 53  CEKYGHEDKDFTISK 9
           C K  H   +  +++
Sbjct: 179 CSKVSHNTDECFVAQ 193


>tr|B8BBV2|B8BBV2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29594 PE=4 SV=1
          Length = 697

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
 Frame = -2

Query: 197 HLEALDQIKREPEELGSQQETKAPV------------WCNSCRSPGHPPQDCPLRAYFHL 54
           ++EA+   +++ EE  ++ +TK  V            WC  CRS GH  +DC +R Y  +
Sbjct: 123 NVEAMLNKEKKSEESKTEGDTKGVVKDGVDKGAQIRKWCGKCRSMGHIAKDCVVRKYCVI 182

Query: 53  CEKYGHEDKDFTISK 9
           C K  H   +  +++
Sbjct: 183 CSKVSHNTDECFVAQ 197


>tr|A9SH37|A9SH37_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_79346 PE=4 SV=1
          Length = 447

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 176 IKREPEELGSQQETKAPVWCNSCRSPGHPPQDCP 75
           +++E E+   Q   +A VWC +C+  GH  QDCP
Sbjct: 307 MEKEKEKRSKQTNFRANVWCTNCKGQGHMVQDCP 340


>tr|A9U2C4|A9U2C4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100672 PE=4 SV=1
          Length = 367

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 170 REPEELGSQQETKAPVWCNSCRSPGHPPQDCP 75
           +E E+   Q   +A VWC +C+  GH  QDCP
Sbjct: 176 KEKEKRPKQTNFRANVWCTNCKGQGHMVQDCP 207


>tr|A9TYI1|A9TYI1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_98965 PE=4 SV=1
          Length = 267

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 170 REPEELGSQQETKAPVWCNSCRSPGHPPQDCP 75
           +E E+   Q   +A VWC +C+  GH  QDCP
Sbjct: 51  KEKEKRPKQTNFRANVWCTNCKGQGHMVQDCP 82


>tr|A9TCA6|A9TCA6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90896 PE=4 SV=1
          Length = 249

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 170 REPEELGSQQETKAPVWCNSCRSPGHPPQDCP 75
           +E E+   Q   +A VWC +C+  GH  QDCP
Sbjct: 146 KEKEKRPKQTNFRANVWCTNCKGQGHMVQDCP 177


>tr|A9T8D2|A9T8D2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_89429 PE=4 SV=1
          Length = 279

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 170 REPEELGSQQETKAPVWCNSCRSPGHPPQDCP 75
           +E E+   Q   +A VWC +C+  GH  QDCP
Sbjct: 176 KEKEKRPKQTNFRANVWCTNCKGQGHMVQDCP 207


>tr|A9S3P6|A9S3P6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_74159 PE=4 SV=1
          Length = 195

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 170 REPEELGSQQETKAPVWCNSCRSPGHPPQDCP 75
           +E E+   Q   +A VWC +C+  GH  QDCP
Sbjct: 164 KEKEKRPKQTNFRANVWCTNCKGQGHMVQDCP 195


>tr|A7P7X8|A7P7X8_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035958001
           PE=4 SV=1
          Length = 246

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 164 PEELGSQQETKAPVWCNSCRSPGHPPQDCPLRAYFHLCEKYGHEDKD 24
           P  + S+  T++  W  +C+ PGH   +CP     H C K GH  +D
Sbjct: 68  PGHIASECTTRSLCW--NCQEPGHTASNCPNEGICHTCGKTGHLARD 112



 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 119 CNSCRSPGHPPQDCPLRAYFHLCEKYGHEDKDFTISKDC 3
           C +C+ PGH  ++CP  A  H C   GH   + T    C
Sbjct: 43  CKNCKRPGHYARECPNVAVCHNCSLPGHIASECTTRSLC 81


>tr|Q6SP50|Q6SP50_9RETR Gag polyprotein (Fragment) OS=Small ruminant
           lentivirus PE=4 SV=1
          Length = 238

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = -2

Query: 200 WHLEALDQIKREPEELGSQQETKAPVWCNSCRSPGHPPQDCPLRAYFHLCEKYGHEDKDF 21
           + ++ L Q  R     G QQ+      C +C  PGH  + C      H C K GH  KD 
Sbjct: 157 FRMQLLAQALRPERRNGQQQK------CYNCGKPGHQARQCRQGIICHHCGKRGHMQKDC 210

Query: 20  TISKD 6
              KD
Sbjct: 211 RKKKD 215