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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915987
Clone id YMU001_000081_E04
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGAAGAATTCGCGGCCGCAGGAATTTTGGAAAATAAAACGTTATGCTTGCTTGCATTGAG
GAATGATGCGTCATGGGTTGACACCTCTTCCCAGGTGTCCTTAGATCTTACGTTTCGTTG
GTGCTTGAAATTTGCATTCATGCTCGGTACAGTGGAGTTGGCGTTTCTGCTAGGACTTGT
GCTCACATGCATATGTTCGGAAATGCCTTGTTTGCAAGCTTTTTGCAGGGTTTAGTACCA
TCATATACTTGTACAAAAACGTCTTCTTGTCATAGGCTTATGAACGGGGACCATCCATAT
CAATGTTACATTGCATAGCATATTTATGTGCCTGGATGCTTAATTTTTGCGTGTTATTAA
GTTTTCTCCTCTTGGATGTCTTCGTAGTTCCACTGGGTTGACTTCCCTTGTCTGCTCGCT
GGCTAACCCTGCGATGGGACTCTCTGACTGGTCCTTCATCAGTTCAATCTCTCCAGCTTC
GGTCAAGTCTGATCTGATTTGCCGTACTTCTTCAACGAGGCTTTGAACTGCAACTATCAT
GGACTCATTCAATCCAAATAC
■■Homology search results ■■ -
sp_hit_id Q8IUC6
Definition sp|Q8IUC6|TCAM1_HUMAN TIR domain-containing adapter molecule 1 OS=Homo sapiens
Align length 55
Score (bit) 36.2
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915987|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_E04.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IUC6|TCAM1_HUMAN TIR domain-containing adapter molecule 1 O...    36   0.10 
sp|P43072|TF3B_CANAL Transcription factor IIIB 70 kDa subunit OS...    31   3.3  

>sp|Q8IUC6|TCAM1_HUMAN TIR domain-containing adapter molecule 1
           OS=Homo sapiens GN=TICAM1 PE=1 SV=1
          Length = 712

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 338 SPLGCLRSSTGLTSLVCSLANPAMGLSDW----SFISSISPASVKSDLICRTSST 490
           S LGCL  S+ L S   SL  P  G+SDW    S  S+ SPAS+ S+L    S T
Sbjct: 160 SNLGCLPPSSALPSGTRSLPRPIDGVSDWSQGCSLRSTGSPASLASNLEISQSPT 214


>sp|P43072|TF3B_CANAL Transcription factor IIIB 70 kDa subunit
           OS=Candida albicans GN=TDS4 PE=3 SV=1
          Length = 553

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -3

Query: 457 DRSWRD*TDEGPVRESHRRVSQRADKGSQPSGTTKTSKRRKLNNTQKLSIQAHKYAMQCN 278
           +R W     +  V +  +R+ Q AD+ +  +  + +  RRK  N   L  +  K     +
Sbjct: 453 ERIWTGLNHDYLVEQEKKRLKQEADELTGNTSKSSSGNRRK-RNKSSLPAELRKELGDID 511

Query: 277 IDMDG-PRS*AYDKKTFLYK 221
           +D DG PRS A   K ++ K
Sbjct: 512 LDEDGTPRSAADSAKMYISK 531
tr_hit_id B3Y695
Definition tr|B3Y695|B3Y695_PONPY TIR domain-containing adaptor molecule 1 OS=Pongo pygmaeus
Align length 55
Score (bit) 36.2
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915987|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_E04.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3Y695|B3Y695_PONPY TIR domain-containing adaptor molecule 1 ...    36   1.1  
tr|B3Y691|B3Y691_HUMAN TIR domain-containing adaptor molecule 1 ...    36   1.1  
tr|B3Y693|B3Y693_PANPA TIR domain-containing adaptor molecule 1 ...    36   1.4  
tr|B3Y692|B3Y692_PANTR TIR domain-containing adaptor molecule 1 ...    36   1.4  
tr|Q1DKH2|Q1DKH2_COCIM Putative uncharacterized protein OS=Cocci...    34   4.1  
tr|B3Y694|B3Y694_9PRIM TIR domain-containing adaptor molecule 1 ...    34   5.4  
tr|B5ME13|B5ME13_HUMAN Putative uncharacterized protein TICAM1 (...    34   5.4  
tr|A2QKL6|A2QKL6_ASPNC Contig An05c0030, complete genome OS=Aspe...    33   9.3  

>tr|B3Y695|B3Y695_PONPY TIR domain-containing adaptor molecule 1
           OS=Pongo pygmaeus GN=TICAM1 PE=2 SV=1
          Length = 711

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 338 SPLGCLRSSTGLTSLVCSLANPAMGLSDW----SFISSISPASVKSDLICRTSST 490
           S LGCL  S+ L S   SL  P  G+SDW    S  S+ SPAS+ S+L    S T
Sbjct: 160 SNLGCLPPSSALPSGTRSLPRPIDGVSDWSQGCSLRSTGSPASLASNLEISQSPT 214


>tr|B3Y691|B3Y691_HUMAN TIR domain-containing adaptor molecule 1
           OS=Homo sapiens GN=TICAM1 PE=2 SV=1
          Length = 712

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 338 SPLGCLRSSTGLTSLVCSLANPAMGLSDW----SFISSISPASVKSDLICRTSST 490
           S LGCL  S+ L S   SL  P  G+SDW    S  S+ SPAS+ S+L    S T
Sbjct: 160 SNLGCLPPSSALPSGTRSLPRPIDGVSDWSQGCSLRSTGSPASLASNLEISQSPT 214


>tr|B3Y693|B3Y693_PANPA TIR domain-containing adaptor molecule 1
           OS=Pan paniscus GN=TICAM1 PE=2 SV=1
          Length = 711

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 338 SPLGCLRSSTGLTSLVCSLANPAMGLSDW----SFISSISPASVKSDLICRTSST 490
           S LGCL  S+ L S   SL  P  G+SDW    S  S+ SPAS+ S+L    S T
Sbjct: 160 SNLGCLPPSSALHSGTRSLPRPIDGVSDWSQGCSLRSTGSPASLASNLEISQSPT 214


>tr|B3Y692|B3Y692_PANTR TIR domain-containing adaptor molecule 1
           OS=Pan troglodytes GN=TICAM1 PE=2 SV=1
          Length = 713

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 338 SPLGCLRSSTGLTSLVCSLANPAMGLSDW----SFISSISPASVKSDLICRTSST 490
           S LGCL  S+ L S   SL  P  G+SDW    S  S+ SPAS+ S+L    S T
Sbjct: 160 SNLGCLPPSSALHSGTRSLPRPIDGVSDWSQGCSLRSTGSPASLASNLEISQSPT 214


>tr|Q1DKH2|Q1DKH2_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_09191 PE=4 SV=1
          Length = 794

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -3

Query: 496 KPR*RSTANQIRLDRSWRD*TDEGPV-RESHRRVSQRADKGSQPSG-TTKTSKRRKLNNT 323
           +PR RSTA+   +D+ WR      PV R  HR  S      S P+    K ++    NNT
Sbjct: 619 RPRPRSTADLASVDKEWRSDRGRSPVSRHHHRHGSGGIYPQSDPAARDLKKNENHPPNNT 678

Query: 322 QKLSIQ 305
             LS Q
Sbjct: 679 SSLSEQ 684


>tr|B3Y694|B3Y694_9PRIM TIR domain-containing adaptor molecule 1
           OS=Gorilla gorilla GN=TICAM1 PE=2 SV=1
          Length = 712

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 338 SPLGCLRSSTGLTSLVCSLANPAMGLSDW----SFISSISPASVKSDLICRTSST 490
           S LGCL  S+ L S   SL  P   +SDW    S  S+ SPAS+ S+L    S T
Sbjct: 160 SNLGCLPPSSALPSGTRSLPRPIDSVSDWSQGCSLRSTGSPASLASNLEISQSPT 214


>tr|B5ME13|B5ME13_HUMAN Putative uncharacterized protein TICAM1
           (Fragment) OS=Homo sapiens GN=TICAM1 PE=4 SV=1
          Length = 543

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 347 GCLRSSTGLTSLVCSLANPAMGLSDW----SFISSISPASVKSDLICRTSST 490
           GCL  S+ L S   SL  P  G+SDW    S  S+ SPAS+ S+L    S T
Sbjct: 21  GCLPPSSALPSGTRSLPRPIDGVSDWSQGCSLRSTGSPASLASNLEISQSPT 72


>tr|A2QKL6|A2QKL6_ASPNC Contig An05c0030, complete genome
            OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
            GN=An05g00630 PE=4 SV=1
          Length = 3820

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 486  EEVRQIRSDLTEAGEIELMKDQSESPIAGLASEQTREVNPVE-LRRHPRGENLITRKN 316
            +E++++ S + E    EL   + E P  G  + +TRE+ P E +   P+ +N   +KN
Sbjct: 1470 DEIKELSSHVAETESNELKLSEGEQPETGDLAGETRELQPEETVEEQPKKKNKKKKKN 1527