NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915994
Clone id YMU001_000081_F04
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAATGACTTCTCAGCTGCAAGAAAAATACTTGGTGAAAGTCCTAGTGAGGGTTGGATCG
CTGATGTGGAGAAGGCTTTGTCCAAGGTGAGTTCAAGTGCTGAGGAACAAGGCGAAGCCA
AGGTGTTTTCATCATCTTTGGCAAACCTGCAAATGGCAGTGAGCAAGCAGGATATCGATC
TTTCCAAAAGTGCCTTTGTAAAGTCTGCTGGTGCTTTAGAAAAATGGTCCTTCTTGACTG
GTTTTGCTGAGCAGCTTAAAGGCCTCTAGCTTTACAAATAGCTCAAGAGTCATTATCTTG
GTTTGCGGAATTACGCTCTCTGTGCAGCATTGTGTATGTATCAAAGAAAAAGCAGGAGGC
CAAAGAAGTATCCCATCGCAAGTCTCATTACAAAAGGGGCATGCGAGATTTCATACAAGC
TCTCTTTTTCTCGCTTTTCCTCGAAGTTATCGGTGAGTG
■■Homology search results ■■ -
sp_hit_id O22773
Definition sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana
Align length 84
Score (bit) 80.9
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915994|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_F04.
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chlorop...    81   2e-15
sp|Q6AM16|PSTB_DESPS Phosphate import ATP-binding protein pstB O...    33   0.77 
sp|A1T5H7|SECA2_MYCVP Protein translocase subunit secA 2 OS=Myco...    32   1.7  
sp|Q21E72|PSTB_SACD2 Phosphate import ATP-binding protein pstB O...    32   1.7  
sp|A3N075|NRDR_ACTP2 Transcriptional repressor nrdR OS=Actinobac...    31   2.3  
sp|Q8CGA0|PPM1F_MOUSE Protein phosphatase 1F OS=Mus musculus GN=...    31   2.9  
sp|O55189|AMBN_MOUSE Ameloblastin OS=Mus musculus GN=Ambn PE=2 SV=1    30   5.0  
sp|Q9WVR7|PPM1F_RAT Protein phosphatase 1F OS=Rattus norvegicus ...    30   6.6  
sp|Q3TA38|T120B_MOUSE Transmembrane protein 120B OS=Mus musculus...    29   8.6  

>sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein,
           chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1
           SV=3
          Length = 216

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 42/84 (50%), Positives = 55/84 (65%)
 Frame = +3

Query: 3   NDFSAARKILGESPSEGWIADVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDL 182
           ND  AA  +LG+     W+  V  A +K+S+S EE  E + F+SSLA+L  +V+K DI+ 
Sbjct: 129 NDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEENTEVEAFNSSLASLITSVNKNDIES 188

Query: 183 SKSAFVKSAGALEKWSFLTGFAEQ 254
           SK AFV SAGA EKW+ LTG  EQ
Sbjct: 189 SKLAFVSSAGAFEKWTTLTGLLEQ 212


>sp|Q6AM16|PSTB_DESPS Phosphate import ATP-binding protein pstB
           OS=Desulfotalea psychrophila GN=pstB PE=3 SV=1
          Length = 293

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 23/83 (27%), Positives = 44/83 (53%)
 Frame = +2

Query: 152 NGSEQAGYRSFQKCLCKVCWCFRKMVLLDWFC*AA*RPLALQIAQESLSWFAELRSLCSI 331
           +G+  +G +  + C+ +      +++L+D  C +A  P+A    +E +   AEL +  SI
Sbjct: 186 SGTSLSGGQQQRLCIARAIAVSPEVILMDEPC-SALDPIATAKVEELI---AELSTQYSI 241

Query: 332 VYVSKKKQEAKEVSHRKSHYKRG 400
           V V+   Q+A  VS R +++  G
Sbjct: 242 VIVTHAMQQASRVSQRTAYFHMG 264


>sp|A1T5H7|SECA2_MYCVP Protein translocase subunit secA 2
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=secA2 PE=3 SV=1
          Length = 850

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 63  DVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKS 191
           D+EK +S++     E  EAKV S ++ N Q  V + + D+ +S
Sbjct: 596 DLEKLMSRLKMPEREPIEAKVVSRAIRNAQSQVEQANFDMRRS 638


>sp|Q21E72|PSTB_SACD2 Phosphate import ATP-binding protein pstB
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=pstB PE=3 SV=1
          Length = 293

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 23/84 (27%), Positives = 43/84 (51%)
 Frame = +2

Query: 149 ANGSEQAGYRSFQKCLCKVCWCFRKMVLLDWFC*AA*RPLALQIAQESLSWFAELRSLCS 328
           A G+  +G +  + C+ +      +++L+D  C +A  P+A    +E +   AEL    +
Sbjct: 185 APGTGLSGGQQQRLCIARTIAVSPEVILMDEPC-SALDPIATAKIEELI---AELSENFT 240

Query: 329 IVYVSKKKQEAKEVSHRKSHYKRG 400
           I  V+   Q+A  VSHR +++  G
Sbjct: 241 IAIVTHSMQQAARVSHRTAYFHMG 264


>sp|A3N075|NRDR_ACTP2 Transcriptional repressor nrdR
           OS=Actinobacillus pleuropneumoniae serotype 5b (strain
           L20) GN=nrdR PE=3 SV=1
          Length = 149

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +3

Query: 63  DVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTG 242
           D+EKA+SK+    +  GE +V S  + +L M   KQ   L K A+++ A     +  +  
Sbjct: 83  DLEKAISKIIIQLQSTGEREVPSKLVGSLAMDALKQ---LDKVAYIRFASVYLSFDDIEE 139

Query: 243 FAEQ 254
           F ++
Sbjct: 140 FTKE 143


>sp|Q8CGA0|PPM1F_MOUSE Protein phosphatase 1F OS=Mus musculus
           GN=Ppm1f PE=2 SV=1
          Length = 452

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = +2

Query: 176 RSFQKCLCKVCWCFRKMVLLDWFC*AA*RPLALQIAQESLSWFAELRSLCSIVYVSKKKQ 355
           RSF  CL KVC  ++K V           PL  Q  Q    W   + ++ +    +++K 
Sbjct: 124 RSFFNCLWKVCSQWQKQV-----------PLTAQAPQ--WQWLVSIHAIRN----TRRKM 166

Query: 356 EAKEVSHRKSHYKRGMRDFIQALFFSLF 439
           E + VS    ++  G+ D +   +F++F
Sbjct: 167 EDRHVSLPAFNHLFGLSDSVHRAYFAVF 194


>sp|O55189|AMBN_MOUSE Ameloblastin OS=Mus musculus GN=Ambn PE=2 SV=1
          Length = 407

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 147 GLPKMMKTPWLR-LVPQHLNSPWTKPSPHQRSNPH*DFHQ 31
           G  K + + WL  L+P H + PW  P  H+   P    HQ
Sbjct: 71  GFGKALNSLWLHGLLPPHNSFPWIGPREHETQQPSLQPHQ 110


>sp|Q9WVR7|PPM1F_RAT Protein phosphatase 1F OS=Rattus norvegicus
           GN=Ppm1f PE=2 SV=1
          Length = 450

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 22/88 (25%), Positives = 40/88 (45%)
 Frame = +2

Query: 176 RSFQKCLCKVCWCFRKMVLLDWFC*AA*RPLALQIAQESLSWFAELRSLCSIVYVSKKKQ 355
           RSF  CL +VC  ++K V           PL  Q  Q    W   + ++ +    +++K 
Sbjct: 123 RSFFNCLWEVCSQWQKRV-----------PLTAQAPQR--KWLVSIHAIRN----TRRKM 165

Query: 356 EAKEVSHRKSHYKRGMRDFIQALFFSLF 439
           E + VS    ++  G+ D +   +F++F
Sbjct: 166 EDRHVSLPAFNHLFGLSDSVHRAYFAVF 193


>sp|Q3TA38|T120B_MOUSE Transmembrane protein 120B OS=Mus musculus
           GN=Tmem120b PE=2 SV=1
          Length = 339

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 275 QIAQESLSWFAELRSLCSIVYVSKKKQEAKEVSHRKSHYKR 397
           +I ++ L     L++LCS   +SK+K+  K++ H    YKR
Sbjct: 27  RIYKQKLEELTSLQTLCS-TSISKQKRHLKDLKHTLQRYKR 66
tr_hit_id A9NQL0
Definition tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 84
Score (bit) 89.0
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915994|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_F04.
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea...    89   1e-16
tr|A7PF69|A7PF69_VITVI Chromosome chr11 scaffold_13, whole genom...    74   5e-12
tr|Q5Z8V3|Q5Z8V3_ORYSJ Os06g0705100 protein OS=Oryza sativa subs...    73   6e-12
tr|B8B267|B8B267_ORYSI Putative uncharacterized protein OS=Oryza...    73   6e-12
tr|B6SU36|B6SU36_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea...    73   6e-12
tr|B4FU98|B4FU98_MAIZE Putative uncharacterized protein OS=Zea m...    73   6e-12
tr|A3BF74|A3BF74_ORYSJ Putative uncharacterized protein OS=Oryza...    73   6e-12
tr|A9SFH1|A9SFH1_PHYPA Predicted protein OS=Physcomitrella paten...    46   8e-04
tr|A7TMW9|A7TMW9_VANPO Putative uncharacterized protein OS=Vande...    35   1.9  
tr|Q0U107|Q0U107_PHANO Putative uncharacterized protein OS=Phaeo...    34   3.2  
tr|Q08UM5|Q08UM5_STIAU Immediate early protein ICP0 OS=Stigmatel...    33   5.4  
tr|Q1E3H0|Q1E3H0_COCIM Putative uncharacterized protein OS=Cocci...    31   5.5  
tr|A1U6S6|A1U6S6_MARAV Phosphate ABC transporter, ATPase subunit...    33   7.1  
tr|B6TLE6|B6TLE6_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea...    33   7.1  
tr|A0MNI6|A0MNI6_9CAUD Putative uncharacterized protein OS=Therm...    33   9.2  

>tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 229

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 46/84 (54%), Positives = 62/84 (73%)
 Frame = +3

Query: 3   NDFSAARKILGESPSEGWIADVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDL 182
           NDF+ A  +LG+S    WI DV++A  KVSS  E++ +A+ F++SL +L  AVSK+++DL
Sbjct: 142 NDFTRAIGVLGKSLDTKWIVDVKEAFLKVSSDPEQKSKAETFTASLDSLISAVSKKNLDL 201

Query: 183 SKSAFVKSAGALEKWSFLTGFAEQ 254
           SKSAFV SA ALE WS LTG +EQ
Sbjct: 202 SKSAFVSSADALEDWSALTGLSEQ 225


>tr|A7PF69|A7PF69_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016931001
           PE=4 SV=1
          Length = 234

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 38/80 (47%), Positives = 50/80 (62%)
 Frame = +3

Query: 3   NDFSAARKILGESPSEGWIADVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDL 182
           ND SAA   LG +    W+     A +K+SSS EE+ E   F+SSLA+L  +V + D++ 
Sbjct: 147 NDLSAASSFLGSNTDADWVQKANIAFTKLSSSPEEKSEVDAFNSSLASLISSVVRNDMES 206

Query: 183 SKSAFVKSAGALEKWSFLTG 242
           SK AFV SA A EKW+ LTG
Sbjct: 207 SKIAFVSSATAFEKWTTLTG 226


>tr|Q5Z8V3|Q5Z8V3_ORYSJ Os06g0705100 protein OS=Oryza sativa subsp.
           japonica GN=P0018H04.9 PE=2 SV=1
          Length = 239

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 38/84 (45%), Positives = 51/84 (60%)
 Frame = +3

Query: 3   NDFSAARKILGESPSEGWIADVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDL 182
           ND  AA  +LG +    W+ ++  A +K SSS EE+     F+SSLA+L  +V+K D+D 
Sbjct: 152 NDLPAASSVLGPNSDAQWVQNINVAFTKFSSSPEEKNMVDSFNSSLASLITSVNKSDVDS 211

Query: 183 SKSAFVKSAGALEKWSFLTGFAEQ 254
           SKSAFV SA  LEKW    G + Q
Sbjct: 212 SKSAFVSSATTLEKWIASAGLSGQ 235


>tr|B8B267|B8B267_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24389 PE=4 SV=1
          Length = 239

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 38/84 (45%), Positives = 51/84 (60%)
 Frame = +3

Query: 3   NDFSAARKILGESPSEGWIADVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDL 182
           ND  AA  +LG +    W+ ++  A +K SSS EE+     F+SSLA+L  +V+K D+D 
Sbjct: 152 NDLPAASSVLGPNSDAQWVQNINVAFTKFSSSPEEKNMVDSFNSSLASLITSVNKSDVDS 211

Query: 183 SKSAFVKSAGALEKWSFLTGFAEQ 254
           SKSAFV SA  LEKW    G + Q
Sbjct: 212 SKSAFVSSATTLEKWIASAGLSGQ 235


>tr|B6SU36|B6SU36_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea
           mays PE=2 SV=1
          Length = 246

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 40/84 (47%), Positives = 51/84 (60%)
 Frame = +3

Query: 3   NDFSAARKILGESPSEGWIADVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDL 182
           +D  AA  +LG S    W+ ++  A SK+SSS E++     F+SSLA L  +VSK D + 
Sbjct: 159 DDLPAASSVLGPSSDAQWVQNINAAFSKLSSSPEQRNVVDSFNSSLATLFTSVSKLDPES 218

Query: 183 SKSAFVKSAGALEKWSFLTGFAEQ 254
           SKSAFV SA ALEKW  L G   Q
Sbjct: 219 SKSAFVSSATALEKWIALAGLGGQ 242


>tr|B4FU98|B4FU98_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 245

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 40/84 (47%), Positives = 51/84 (60%)
 Frame = +3

Query: 3   NDFSAARKILGESPSEGWIADVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDL 182
           +D  AA  +LG S    W+ ++  A SK+SSS E++     F+SSLA L  +VSK D + 
Sbjct: 158 DDLPAASSVLGPSSDAQWVQNINAAFSKLSSSPEQRNVVDSFNSSLATLFTSVSKLDPES 217

Query: 183 SKSAFVKSAGALEKWSFLTGFAEQ 254
           SKSAFV SA ALEKW  L G   Q
Sbjct: 218 SKSAFVSSATALEKWIALAGLGGQ 241


>tr|A3BF74|A3BF74_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021696 PE=4 SV=1
          Length = 241

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 38/84 (45%), Positives = 51/84 (60%)
 Frame = +3

Query: 3   NDFSAARKILGESPSEGWIADVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDL 182
           ND  AA  +LG +    W+ ++  A +K SSS EE+     F+SSLA+L  +V+K D+D 
Sbjct: 154 NDLPAASSVLGPNSDAQWVQNINVAFTKFSSSPEEKNMVDSFNSSLASLITSVNKSDVDS 213

Query: 183 SKSAFVKSAGALEKWSFLTGFAEQ 254
           SKSAFV SA  LEKW    G + Q
Sbjct: 214 SKSAFVSSATTLEKWIASAGLSGQ 237


>tr|A9SFH1|A9SFH1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233194 PE=4 SV=1
          Length = 262

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 25/51 (49%), Positives = 33/51 (64%)
 Frame = +3

Query: 6   DFSAARKILGESPSEGWIADVEKALSKVSSSAEEQGEAKVFSSSLANLQMA 158
           DFS A  +L +  S+ WI D++ AL KVSSS++E   A  F SSL +LQ A
Sbjct: 134 DFSKATAVLAQQNSD-WIRDIQAALKKVSSSSDEVAVADTFRSSLTSLQAA 183


>tr|A7TMW9|A7TMW9_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_1051p5 PE=4 SV=1
          Length = 370

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +3

Query: 60  ADVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFV-KSAGALEKWSFL 236
           +D +K  SK   S+EE+ E K  +S ++N ++  ++QD D+S+  ++ KS   ++   F 
Sbjct: 65  SDKDKNKSKKKPSSEERDEGKHMTSEISNKRVKPNEQDTDISEDEWILKSQPLVQHKMFN 124

Query: 237 TGFAE 251
           +G ++
Sbjct: 125 SGISD 129


>tr|Q0U107|Q0U107_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_14524 PE=4 SV=1
          Length = 816

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -3

Query: 244 KPVKKDHFSKAPADFTKALLERSISCLLTAICRFAKDDENTLASPCSSALELTLDKAFST 65
           +P+K+D FS A  D T+ ++   I+   +A+  F  DD  T+       LE     A ST
Sbjct: 474 RPIKQDDFSDAKLDRTRMMISNRITERCSAVFSFGPDDALTI-----KGLEFDKITALST 528

Query: 64  SAIQPSLGLS 35
               P++ L+
Sbjct: 529 HVHPPAIDLT 538