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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916000
Clone id YMU001_000081_G02
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCAGAGACAATGCCATGATACAAAATCGAGTGCCTCATATCAAGAAAATCTTTGTATGG
TGATCATCTTAGCTGTTGTTAACAGTTCTAGATTGCAGATAATAAAATGGTACGTCTACT
AGATAACTGCAAGAGGGAGTCCGAATTGCCACCCCCCCAAAGAAGAAAGTACGCTCATAT
TGCAAATACTCTACATCGCTCATCCTTAAAGTACAAAATGACATTTCCTTTGTCAGAAGC
TTCATGTAAGGTCTCTAGGGCTTGAACCTCTGACGTCAGTATACAAAAATGAATCTTTGG
AAATGAACGGTAGACTCTGTGTAAACAATGTTAAATTGCTTTGTGAAACAAGGGTGCAAG
CCTTACGCAAACCACGATATATATACACATCCTCTCACAAAATCAGCACCTGTTAGGTGG
TTGGGTGAGTGCTTGCAGCCCACGAAGCCACTTGTAGGGTACACCATGGAAACAAGAATC
ACAATTCCTTCAATTGGTTCTCCAAGCTTGCAATATCAGATCTAATTTCATTA
■■Homology search results ■■ -
sp_hit_id O00519
Definition sp|O00519|FAAH1_HUMAN Fatty-acid amide hydrolase 1 OS=Homo sapiens
Align length 63
Score (bit) 31.6
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916000|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_G02.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O00519|FAAH1_HUMAN Fatty-acid amide hydrolase 1 OS=Homo sapie...    32   2.5  
sp|Q9Z0U0|XPR1_MOUSE Xenotropic and polytropic retrovirus recept...    31   4.3  
sp|Q9DEN4|FXD3A_XENLA Forkhead box protein D3-A OS=Xenopus laevi...    31   4.3  
sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 O...    30   5.6  
sp|Q9DEN3|FXD3B_XENLA Forkhead box protein D3-B OS=Xenopus laevi...    30   5.6  
sp|Q5M7L9|FOXD3_XENTR Forkhead box protein D3 OS=Xenopus tropica...    30   5.6  
sp|Q1LI20|RPOB_RALME DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q46WD4|RPOB_RALEJ DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q0K606|RPOB_RALEH DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q47JB0|RPOB_DECAR DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q2SU19|RPOB_BURTA DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q63Q03|RPOB_BURPS DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|A3NEI7|RPOB_BURP6 DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q3JMQ3|RPOB_BURP1 DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|A3P0C5|RPOB_BURP0 DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|A1V8B2|RPOB_BURMS DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|P0C151|RPOB_BURMA DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|A2S7G6|RPOB_BURM9 DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|A3MRU5|RPOB_BURM7 DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q7W0R9|RPOB_BORPE DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q7W2G9|RPOB_BORPA DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q7WRD9|RPOB_BORBR DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q2L2M3|RPOB_BORA1 DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|Q5P339|RPOB_AZOSE DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|A1KB34|RPOB_AZOSB DNA-directed RNA polymerase subunit beta OS...    30   7.3  
sp|A4SUV4|RPOB_POLSQ DNA-directed RNA polymerase subunit beta OS...    30   9.5  

>sp|O00519|FAAH1_HUMAN Fatty-acid amide hydrolase 1 OS=Homo sapiens
           GN=FAAH PE=1 SV=2
          Length = 579

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 228 LCQKLHVRSLGLEPLTSVYKNESLEMN-GRLCVNNVKLLCETRVQALRKPRYIYTSSHKI 404
           L QKLH R L  E +   Y  ++ E+N G  CV +    CET++    +   +Y     +
Sbjct: 82  LVQKLHSRELAPEAVLFTYVGKAWEVNKGTNCVTSYLADCETQLSQAPRQGLLYGVPVSL 141

Query: 405 STC 413
             C
Sbjct: 142 KEC 144


>sp|Q9Z0U0|XPR1_MOUSE Xenotropic and polytropic retrovirus receptor
           1 OS=Mus musculus GN=Xpr1 PE=1 SV=1
          Length = 695

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
 Frame = -3

Query: 474 CFHGVPYKWLRGLQALTQPPNRC*FCERMCIYIVVCVRLAPLFHKAI*HCLHR---VYRS 304
           CF+    KW      L   P    FC +    +   V+  P + + I  CL R     R+
Sbjct: 415 CFYSFELKWDESKGLLPNDPQEPEFCHKYSYGVRAIVQCIPAWLRFI-QCLRRYRDTRRA 473

Query: 303 FP------KIHFCILTSEVQALETLHEASDKGNVILYF 208
           FP      K      T    AL + HE  +  + +++F
Sbjct: 474 FPHLVNAGKYSTTFFTVTFAALYSTHEEQNHSDTVVFF 511


>sp|Q9DEN4|FXD3A_XENLA Forkhead box protein D3-A OS=Xenopus laevis
           GN=foxd3-A PE=1 SV=1
          Length = 371

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = +1

Query: 361 PYANH-----DIYTHPLTKSAP-VRWLGECLQPTKPLVGYTMETRITIPSIGSPSLQYQI 522
           PY  H       YTHP     P +  +G  L P  PL+  +  TR    S  SPSLQ Q+
Sbjct: 217 PYGRHYGLHPAAYTHPAALQYPYIPPVGHMLPPAVPLLPSSELTRKAFSSQLSPSLQLQL 276


>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11
           OS=Homo sapiens GN=USP11 PE=1 SV=2
          Length = 920

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 101 NKMVRLLDNCKRESELPPPQRRKYAHIANTLHRSSLKYKMTFP 229
           N+   LLDNC   S+ PP +RRK      T++ +    + T P
Sbjct: 649 NRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNSNGTSDRTTSP 691


>sp|Q9DEN3|FXD3B_XENLA Forkhead box protein D3-B OS=Xenopus laevis
           GN=foxd3-B PE=2 SV=1
          Length = 371

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = +1

Query: 361 PYANH-----DIYTHPLTKSAP-VRWLGECLQPTKPLVGYTMETRITIPSIGSPSLQYQI 522
           PY  H       YTHP     P +  +G  L P  PL+  +  TR    S  SPSLQ Q+
Sbjct: 217 PYGRHYGLHPAAYTHPAALQYPYIPPVGPMLPPAVPLLPSSELTRKAFSSQLSPSLQLQL 276


>sp|Q5M7L9|FOXD3_XENTR Forkhead box protein D3 OS=Xenopus tropicalis
           GN=foxd3 PE=2 SV=1
          Length = 369

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 358 KPYANHDI-YTHPLTKSAP-VRWLGECLQPTKPLVGYTMETRITIPSIGSPSLQYQI 522
           +PY  H   YTHP     P +  +G  L P  PL+  +  +R    S  SPSLQ Q+
Sbjct: 218 RPYGLHPAAYTHPAALQYPYIPPVGPMLPPAVPLLPSSELSRKAFSSQLSPSLQLQL 274


>sp|Q1LI20|RPOB_RALME DNA-directed RNA polymerase subunit beta
           OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
           DSM 2839) GN=rpoB PE=3 SV=1
          Length = 1368

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 361 PYANHDIYTHPLTKSAPVRWLGECLQPTKPLVGYTMETRITIPS 492
           P+  HD     L  +   R    CL+P KPLVG  +E  + + S
Sbjct: 675 PFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVAVDS 718


>sp|Q46WD4|RPOB_RALEJ DNA-directed RNA polymerase subunit beta
           OS=Ralstonia eutropha (strain JMP134) GN=rpoB PE=3 SV=1
          Length = 1368

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 361 PYANHDIYTHPLTKSAPVRWLGECLQPTKPLVGYTMETRITIPS 492
           P+  HD     L  +   R    CL+P KPLVG  +E  + + S
Sbjct: 675 PFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVAVDS 718


>sp|Q0K606|RPOB_RALEH DNA-directed RNA polymerase subunit beta
           OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428
           / Stanier 337) GN=rpoB PE=3 SV=1
          Length = 1368

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 361 PYANHDIYTHPLTKSAPVRWLGECLQPTKPLVGYTMETRITIPS 492
           P+  HD     L  +   R    CL+P KPLVG  +E  + + S
Sbjct: 675 PFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVAVDS 718


>sp|Q47JB0|RPOB_DECAR DNA-directed RNA polymerase subunit beta
           OS=Dechloromonas aromatica (strain RCB) GN=rpoB PE=3
           SV=1
          Length = 1427

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 361 PYANHDIYTHPLTKSAPVRWLGECLQPTKPLVGYTMETRITIPS 492
           P+  HD     L  +   R    CL+P KPLVG  +E  + + S
Sbjct: 744 PFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDS 787
tr_hit_id Q24CV5
Definition tr|Q24CV5|Q24CV5_TETTH Mitochondrial carrier protein OS=Tetrahymena thermophila SB210
Align length 35
Score (bit) 34.7
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916000|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_G02.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q24CV5|Q24CV5_TETTH Mitochondrial carrier protein OS=Tetrahym...    35   3.2  
tr|Q096Q9|Q096Q9_STIAU Putative uncharacterized protein OS=Stigm...    33   9.2  

>tr|Q24CV5|Q24CV5_TETTH Mitochondrial carrier protein OS=Tetrahymena
           thermophila SB210 GN=TTHERM_00713470 PE=3 SV=2
          Length = 304

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 95  ADNKMVRLLDNCKRESELPPPQRRKYAHIANTLHR 199
           AD  +VR    C+R+S LPP QRR Y H+ + L R
Sbjct: 131 ADVSLVR----CQRDSLLPPEQRRNYKHVGDALTR 161


>tr|Q096Q9|Q096Q9_STIAU Putative uncharacterized protein
           OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_0465 PE=4
           SV=1
          Length = 208

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +1

Query: 388 HPLTKSAPVRWLGECLQPT-----KPLVGYTMETRITIPSIGSP 504
           HP     P+ WLGE L PT      P  GY    ++T+P    P
Sbjct: 102 HPRRSPGPLAWLGELLLPTAEAHLPPYTGYIYLVQVTVPGRQCP 145