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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916003
Clone id YMU001_000081_G09
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCACTTCCATACTTGAGATGTCCAAGTTCTGAACCCATTATGCCCGAAAAAGGGCATGGG
TGATCGATGGACGGTCCGCTTTTTGAGTACTCAATATCAATCTGAGGGCAGCAACAGTTT
AAAGTGGAGTGTCGTGTATTCTTGAAGAATGGGGCACCAACATGATTCACCTGTATCTGA
AGATCCTGAGCTACTATTTGCTGTTATGCCGGTGGCATGGAGTCTGTAGCCGAACCGCTT
TTCCCTTGGGGGGCATTGGATAGATCGTACAGACCGCCAAGGAGTACGGGCGTCCAAGTG
ATGGATGCGCTGCACCTGTATGCAACTTGCTCCACCTGTAACGACGCCAGGTACGCAAAT
GGGCATGCAATATCGAAAGCAAACTCAATCGTTGAACTCCCTCTTTCCATGACTA
■■Homology search results ■■ -
sp_hit_id Q50679
Definition sp|Q50679|Y2286_MYCTU Uncharacterized protein Rv2286c/MT2344 OS=Mycobacterium tuberculosis
Align length 34
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916003|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_G09.
         (415 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q50679|Y2286_MYCTU Uncharacterized protein Rv2286c/MT2344 OS=...    34   0.26 
sp|P19601|SAX1_CHICK Homeobox protein SAX-1 (Fragment) OS=Gallus...    33   0.58 
sp|P91428|COQ4_CAEEL Ubiquinone biosynthesis protein coq-4 OS=Ca...    30   3.8  
sp|Q95118|IL2RG_BOVIN Cytokine receptor common gamma chain OS=Bo...    30   4.9  

>sp|Q50679|Y2286_MYCTU Uncharacterized protein Rv2286c/MT2344
           OS=Mycobacterium tuberculosis GN=Rv2286c PE=4 SV=1
          Length = 230

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 395 STIEFAFDIACPFAYLASLQVEQVAYRCSASITW 294
           +T++F FD  CPFAY  S+ +  V  +   +I W
Sbjct: 2   TTVDFHFDPLCPFAYQTSVWIRDVRAQLGITINW 35


>sp|P19601|SAX1_CHICK Homeobox protein SAX-1 (Fragment) OS=Gallus
           gallus GN=SAX1 PE=2 SV=2
          Length = 232

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = -1

Query: 394 QRLSL---LSILHAHLRTW---RRYRWSKLHTGAAHPSLGRPYSLAVCTIYPMPPKGKAV 233
           +RL+L   LS+    ++ W   RR +W K H GA   +   P + A C+  P PP+  A+
Sbjct: 94  ERLNLALSLSLTETQVKIWFQNRRTKWKKQHPGADGAAAPAPPAAARCS--PSPPRPAAL 151

Query: 232 RLQT 221
             QT
Sbjct: 152 PGQT 155


>sp|P91428|COQ4_CAEEL Ubiquinone biosynthesis protein coq-4
           OS=Caenorhabditis elegans GN=coq-4 PE=2 SV=2
          Length = 231

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 375 RYCMPICVPGVVTGGASCIQVQRIHHLDARTPW 277
           +Y +P+CV G + GGA  +   R   +D   PW
Sbjct: 159 QYGLPMCVTGGIFGGARLLTKNRQELVDRNLPW 191


>sp|Q95118|IL2RG_BOVIN Cytokine receptor common gamma chain OS=Bos
           taurus GN=IL2RG PE=2 SV=1
          Length = 379

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 334 WSKLHTGAAHPSLGRPYSLAVCTIYPMPPKGKAVRLQTPCHRHN 203
           WS +  G A  SL   YS  +C +  +PPKG      +PC +H+
Sbjct: 323 WSGVSKGLAE-SLQPDYSERLCHVSEIPPKGGEGPGGSPCSQHS 365
tr_hit_id B2VS15
Definition tr|B2VS15|B2VS15_PYRTR DSBA oxidoreductase OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
Align length 57
Score (bit) 63.5
E-value 5.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916003|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_G09.
         (415 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2VS15|B2VS15_PYRTR DSBA oxidoreductase OS=Pyrenophora tritic...    64   5e-14
tr|Q0UFK1|Q0UFK1_PHANO Putative uncharacterized protein OS=Phaeo...    70   5e-11
tr|A6GBK2|A6GBK2_9DELT DSBA oxidoreductase OS=Plesiocystis pacif...    56   8e-07
tr|A7S8K4|A7S8K4_NEMVE Predicted protein OS=Nematostella vectens...    55   1e-06
tr|A7HWH7|A7HWH7_PARL1 DSBA oxidoreductase OS=Parvibaculum lavam...    51   3e-05
tr|Q08QE2|Q08QE2_STIAU 2-hydroxychromene-2-carboxylate isomerase...    51   3e-05
tr|A8IQ60|A8IQ60_AZOC5 2-hydroxychromene-2-carboxylate isomerase...    38   4e-05
tr|A7IGW6|A7IGW6_XANP2 DSBA oxidoreductase OS=Xanthobacter autot...    41   4e-05
tr|B7YM45|B7YM45_VARPD DSBA oxidoreductase OS=Variovorax paradox...    50   6e-05
tr|Q0BZP4|Q0BZP4_HYPNA Putative 2-hydroxychromene-2-carboxylate ...    50   7e-05
tr|Q46S13|Q46S13_RALEJ DSBA oxidoreductase OS=Ralstonia eutropha...    48   2e-04
tr|Q1IBS0|Q1IBS0_PSEE4 Putative 2-hydroxychromene-2-carboxylate ...    48   2e-04
tr|Q2CFM7|Q2CFM7_9RHOB 2-hydroxychromene-2-carboxylate isomerase...    44   3e-04
tr|Q1LFL3|Q1LFL3_RALME DSBA oxidoreductase OS=Ralstonia metallid...    48   3e-04
tr|Q3K9A9|Q3K9A9_PSEPF DSBA oxidoreductase OS=Pseudomonas fluore...    47   4e-04
tr|B1J851|B1J851_PSEPW DSBA oxidoreductase OS=Pseudomonas putida...    47   5e-04
tr|B3RTU9|B3RTU9_TRIAD Putative uncharacterized protein OS=Trich...    47   5e-04
tr|Q47JX8|Q47JX8_DECAR DSBA oxidoreductase OS=Dechloromonas arom...    45   6e-04
tr|B6IQU8|B6IQU8_RHOCS 2-hydroxychromene-2-carboxylate isomerase...    46   8e-04
tr|Q9I714|Q9I714_PSEAE Putative uncharacterized protein OS=Pseud...    45   0.001
tr|Q88IW7|Q88IW7_PSEPK 2-hydroxychromene-2-carboxylate isomerase...    45   0.001
tr|Q02UW0|Q02UW0_PSEAB Putative 2-hydroxychromene-2-carboxylate ...    45   0.001
tr|B0UE44|B0UE44_METS4 DSBA oxidoreductase OS=Methylobacterium s...    45   0.001
tr|A5W480|A5W480_PSEP1 DSBA oxidoreductase OS=Pseudomonas putida...    45   0.001
tr|B7V235|B7V235_PSEAE Putative 2-hydroxychromene-2-carboxylate ...    45   0.001
tr|A6F0N9|A6F0N9_9ALTE Putative 2-hydroxychromene-2-carboxylate ...    45   0.001
tr|A3LGT5|A3LGT5_PSEAE Putative uncharacterized protein OS=Pseud...    45   0.001
tr|A3L0V1|A3L0V1_PSEAE Putative uncharacterized protein OS=Pseud...    45   0.001
tr|A6UXQ4|A6UXQ4_PSEA7 Putative uncharacterized protein OS=Pseud...    45   0.002
tr|Q1N2R4|Q1N2R4_9GAMM DSBA oxidoreductase OS=Oceanobacter sp. R...    45   0.002

>tr|B2VS15|B2VS15_PYRTR DSBA oxidoreductase OS=Pyrenophora
           tritici-repentis (strain Pt-1C-BFP) GN=PTRG_00354 PE=4
           SV=1
          Length = 205

 Score = 63.5 bits (153), Expect(2) = 5e-14
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = -3

Query: 392 TIEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSNAPQGKSGSATD 222
           T+ F +DI+CPFAY+AS ++  +A R    + + PVLLG +Y  + APQG SGSA+D
Sbjct: 8   TLHFNYDISCPFAYIASTRIRALATRTRTPLVYRPVLLGAIYRSTAAPQGASGSASD 64



 Score = 37.0 bits (84), Expect(2) = 5e-14
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -1

Query: 127 PL*TVAALRLILSTQKADRPSITHALFRA*WVQNLDISSMEV 2
           P  TV ALRL+    + DR  +THALF+A W    D++  +V
Sbjct: 96  PRKTVDALRLLYVLGEEDREKVTHALFKAYWAGGRDVADKKV 137


>tr|Q0UFK1|Q0UFK1_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_09463 PE=4 SV=1
          Length = 484

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 36/94 (38%), Positives = 54/94 (57%)
 Frame = -3

Query: 410 MERGSSTIEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSNAPQGKSGS 231
           M   S T+ F FDI+CPFAY+AS +V  +A R + ++T  PVLLG +Y  + APQG +GS
Sbjct: 1   MSPPSPTLTFNFDISCPFAYIASTRVRALATRTNTTLTLRPVLLGAIYRSTAAPQGAAGS 60

Query: 230 ATDSMPPA*QQIVAQDLQIQVNHVGAPFFKNTRH 129
           A+D      +++ A  +   +   G  F +   H
Sbjct: 61  ASDVFNSTKKRVTAASMGRTLRRYGVGFKQPAAH 94


>tr|A6GBK2|A6GBK2_9DELT DSBA oxidoreductase OS=Plesiocystis pacifica
           SIR-1 GN=PPSIR1_33676 PE=4 SV=1
          Length = 434

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 31/87 (35%), Positives = 46/87 (52%)
 Frame = -3

Query: 389 IEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSNAPQGKSGSATDSMPP 210
           + F FD +CP+AY+AS  VE +A R  A +   P+LLGG++   + PQ  S    + +PP
Sbjct: 6   VRFYFDFSCPYAYVASTLVEAMAERAGAELDVRPILLGGVFRARSTPQNLS----EVLPP 61

Query: 209 A*QQIVAQDLQIQVNHVGAPFFKNTRH 129
           A  +    D+Q Q    G P    + H
Sbjct: 62  AKARHNFADMQRQAALAGVPLRMPSGH 88



 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = -1

Query: 127 PL*TVAALRLILSTQK-------ADRPSITHALFRA*WVQNLDISSMEV 2
           P+ TV ALR+ L+  +       A+     HA+FRA W ++ DIS  EV
Sbjct: 302 PMNTVLALRMTLAADRDAQILDHAEGRRFVHAIFRAYWAEDRDISDPEV 350


>tr|A7S8K4|A7S8K4_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g243590 PE=4 SV=1
          Length = 571

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = -3

Query: 389 IEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSNAPQGKSG-SATDSMP 213
           + F +D+ CPFA++AS  +E +A R  A I W PVLLGGLY    A  G+   SA D M 
Sbjct: 4   VVFYYDVVCPFAFMASKFIEGLAKRTQAEIVWKPVLLGGLY---KAISGEGDYSAADKMC 60

Query: 212 PA*QQIVAQ 186
            A + IV Q
Sbjct: 61  DARKLIVGQ 69



 Score = 37.4 bits (85), Expect = 0.38
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = -3

Query: 374 DIACPFAYLASLQVEQVA---YRCSASITWTPVLLGGLYDLSNAPQGKSGSATDSMPPA* 204
           D A P++YL S Q+  +    +  S  + W P+L+G L+     P     S  DS     
Sbjct: 368 DFASPWSYLGSTQIADLVSSLHPVSVEVEWVPILVGALFKAIGTPVVPMQSVGDSK---- 423

Query: 203 QQIVAQDLQIQVNHVGAPFFKNTRHSTLNCCCP 105
           +Q   +DL    +++  P  K T H  L    P
Sbjct: 424 RQYFMKDLSRYSDYLSVP-LKWTSHFPLRTILP 455


>tr|A7HWH7|A7HWH7_PARL1 DSBA oxidoreductase OS=Parvibaculum
           lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
           GN=Plav_2652 PE=4 SV=1
          Length = 218

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = -3

Query: 395 STIEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSN 255
           +T+EF FD + P+ YLA  +VE VA R  A+I W P+L+GG+++  N
Sbjct: 20  ATLEFFFDCSSPWTYLAFARVEAVAERTGATIEWRPILVGGVFNAVN 66


>tr|Q08QE2|Q08QE2_STIAU 2-hydroxychromene-2-carboxylate isomerase
           family protein OS=Stigmatella aurantiaca DW4/3-1
           GN=STIAU_7225 PE=4 SV=1
          Length = 197

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 26/63 (41%), Positives = 35/63 (55%)
 Frame = -3

Query: 398 SSTIEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSNAPQGKSGSATDS 219
           S T+EF FD A P++YLAS QVE +A R    + W P LLG ++            AT +
Sbjct: 2   SKTLEFFFDYASPYSYLASAQVEVLAVRTGVELRWRPFLLGAVF-----------KATGN 50

Query: 218 MPP 210
           +PP
Sbjct: 51  VPP 53


>tr|A8IQ60|A8IQ60_AZOC5 2-hydroxychromene-2-carboxylate isomerase
           family protein OS=Azorhizobium caulinodans (strain ATCC
           43989 / DSM 5975 / ORS 571) GN=AZC_0747 PE=4 SV=1
          Length = 208

 Score = 37.7 bits (86), Expect(2) = 4e-05
 Identities = 21/81 (25%), Positives = 43/81 (53%)
 Frame = -3

Query: 392 TIEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSNAPQGKSGSATDSMP 213
           +++F ++ + P++YL+++++  +A      +TW P LLG ++    A  G S S    +P
Sbjct: 5   SLDFYYEFSSPYSYLSAVRIGPLAEAAGVHVTWKPFLLGPIF----AELGYSSSPFVDVP 60

Query: 212 PA*QQIVAQDLQIQVNHVGAP 150
              +  + +D+Q    H G P
Sbjct: 61  LKGEH-MWRDVQRLAVHYGLP 80



 Score = 32.3 bits (72), Expect(2) = 4e-05
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 127 PL*TVAALRLILSTQKADRPSITHALFRA*WVQNLDISSMEV 2
           PL T+ A R+ L    A RP  T A F+A + +  DIS  EV
Sbjct: 89  PLNTLLAARVALHLNDASRPGFTVAAFKALFAKGRDISDREV 130


>tr|A7IGW6|A7IGW6_XANP2 DSBA oxidoreductase OS=Xanthobacter
           autotrophicus (strain ATCC BAA-1158 / Py2) GN=Xaut_2015
           PE=4 SV=1
          Length = 204

 Score = 40.8 bits (94), Expect(2) = 4e-05
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = -3

Query: 398 SSTIEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSNAPQGKSGSATDS 219
           S T++F ++ A P++YLA+ ++  +A      + W P LLG ++    A QG + S  ++
Sbjct: 3   SGTLDFYYEFASPYSYLAAARITALAELADVQVAWKPFLLGPIF----AGQGYTTSPFNT 58

Query: 218 MP 213
            P
Sbjct: 59  YP 60



 Score = 29.3 bits (64), Expect(2) = 4e-05
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 157 VPHSSRIHDTPL*TVAALRLILSTQKADRPSITHALFRA*WVQNLDISSME 5
           +P  +R    P   + A RL +    A RPS T A+F A + Q  DIS  E
Sbjct: 79  LPPVTRPDPFPANGLLAARLAVYLNDACRPSFTRAVFYAEFAQGRDISDRE 129


>tr|B7YM45|B7YM45_VARPD DSBA oxidoreductase OS=Variovorax paradoxus
           S110 GN=VaparDRAFT_2252 PE=4 SV=1
          Length = 197

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 35/123 (28%), Positives = 55/123 (44%)
 Frame = -3

Query: 398 SSTIEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSNAPQGKSGSATDS 219
           + T+EF FD   P AYLA+ Q+  V     A + W P+LLGG++  +      + S  + 
Sbjct: 2   TKTVEFYFDFGSPAAYLAATQLPHVCADTGAELVWKPMLLGGVFQATG-----NRSPAEV 56

Query: 218 MPPA*QQIVAQDLQIQVNHVGAPFFKNTRHSTLNCCCPQIDIEYSKSGPSIDHPCPFSGI 39
           +P A    +  DLQ      G PF  N  H  +N     + +    +G  +  P  F   
Sbjct: 57  VPKAPYMTI--DLQRFAKRYGVPFVHNP-HFPIN----TLLLMRGATGLQMKEPARFGAY 109

Query: 38  MGS 30
           +G+
Sbjct: 110 VGA 112


>tr|Q0BZP4|Q0BZP4_HYPNA Putative 2-hydroxychromene-2-carboxylate
           isomerase OS=Hyphomonas neptunium (strain ATCC 15444)
           GN=HNE_2354 PE=4 SV=1
          Length = 198

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = -3

Query: 392 TIEFAFDIACPFAYLASLQVEQVAYRCSASITWTPVLLGGLYDLSN 255
           T+EF FD   P AYLA   + Q+  R  A+  +TPVLLGGL+ L+N
Sbjct: 3   TVEFQFDFGSPNAYLAHRIIPQIEARTGATFVYTPVLLGGLFKLTN 48