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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916005
Clone id YMU001_000081_G11
Library
Length 469
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000081_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTTGTGTCATAACAAACAAGTACCCTCGTAACAATACGGATAAATTACCACAATATGG
ATAAACTACCAAGTATAGTGAGTTGTATGTATTAAACAAACCATGTCTAATACTATGAAG
GGTATCCAACCGTTGCATTATCTCAACTTGGTTGGCAAGTAGCCTCTTCAATACCTTGCG
AGTATCAGCCAAGTCAGCTTCTACTCTCTTCATCTGCTCACAGCACGAAATGGAGTCCAC
ACAGAGAAAAGGTCGCCTATCTGATGGTGACACATTGAAACGTCTTACTTGCTCCTCTAC
AACTGAAACCCGATGTTCCAAAACCCATGGCTTGTCACCCCTCTGGCAAGCTGAAACATT
TGCAGTCTCTTGAGAGCTGATCGAGTTGGAACTTCCCATGGGAACACCTCTTAAAACGAG
GCTCCTTTGCCAAAGCAGTGCAACACGGGAGAGTAACTTTCCAAGGTAC
■■Homology search results ■■ -
sp_hit_id O42649
Definition sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes protein 3 OS=Schizosaccharomyces pombe
Align length 124
Score (bit) 31.2
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916005|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_G11.
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes prote...    31   2.4  
sp|P11215|ITAM_HUMAN Integrin alpha-M OS=Homo sapiens GN=ITGAM P...    30   4.1  
sp|Q98325|CFLA_MCV1 Viral CASP8 and FADD-like apoptosis regulato...    30   4.1  
sp|P14337|POLG_DEN28 Genome polyprotein OS=Dengue virus type 2 (...    30   6.8  
sp|Q1XH17|TRI72_MOUSE Tripartite motif-containing protein 72 OS=...    30   6.9  
sp|Q94F08|HIPL2_ARATH HIPL2 protein OS=Arabidopsis thaliana GN=H...    30   6.9  
sp|O07532|LYTF_BACSU Endopeptidase lytF OS=Bacillus subtilis GN=...    29   9.1  
sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles walt...    29   9.1  

>sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes protein 3
            OS=Schizosaccharomyces pombe GN=psm3 PE=1 SV=1
          Length = 1194

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
 Frame = -2

Query: 423  SLVLRGVPM----GSSNSISSQETANV--SACQRGDKPWVLEHRVSVVEEQVRRFNVSPS 262
            +L LR  P+    GS N I   E  +V  S  +  +K  +++   S +EEQ++R N   S
Sbjct: 824  NLYLRRNPLKAEIGSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEIS 883

Query: 261  DRRPFLCVDSISCCEQMKRVEADL-ADTRKVLKR--LLANQVEIMQRLDTLHSIRHGLFN 91
            D+R  L        E   R+E D   + R   KR  LLA + E  +++ +L  +    F 
Sbjct: 884  DKRNELESLEELQHEVATRIEQDAKINERNAAKRSLLLARKKECNEKIKSLGVLPEEAFI 943

Query: 90   TYNS 79
             Y S
Sbjct: 944  KYVS 947


>sp|P11215|ITAM_HUMAN Integrin alpha-M OS=Homo sapiens GN=ITGAM PE=1
            SV=2
          Length = 1152

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +2

Query: 161  SLFNTLRVSAKSASTLFICSQHEMESTQRKGRLSDGDTLKRLTCSSTTETRCSKTHGLSP 340
            + F  L +S +  STL      + + +QR  RL+           +   T CS  H + P
Sbjct: 819  TFFFPLDLSYRKVSTL------QNQRSQRSWRLACESASSTEVSGALKSTSCSINHPIFP 872

Query: 341  LWQAETFAVS*ELIELELPMGTPLKTRLLCQSSATRESNFPR 466
                 TF ++      ++     L  +LL +++ T E+N PR
Sbjct: 873  ENSEVTFNIT-----FDVDSKASLGNKLLLKANVTSENNMPR 909


>sp|Q98325|CFLA_MCV1 Viral CASP8 and FADD-like apoptosis regulator
           OS=Molluscum contagiosum virus subtype 1 GN=MC159L PE=1
           SV=1
          Length = 241

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 249 FLCVDSISCCEQMKRVEADLADTRKVLKRLLANQVEIMQRLDTLHSIRHGL 97
           FLC D+   C  + +    L+  RK+    L   + ++QR+D L S R GL
Sbjct: 30  FLCHDAAPGCTTVTQALCSLSQQRKLTLAALVEMLYVLQRMDLLKS-RFGL 79


>sp|P14337|POLG_DEN28 Genome polyprotein OS=Dengue virus type 2
            (isolate Thailand/0168/1979) PE=1 SV=2
          Length = 3391

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 126  PTVALSQLGWQVASSIPCEYQPSQLLLSSSAHSTKWSP 239
            P   + Q  W+V+ +I      S LLL+SS   T W P
Sbjct: 1283 PNAVILQNAWKVSCTILAVVSVSPLLLTSSQQKTDWIP 1320


>sp|Q1XH17|TRI72_MOUSE Tripartite motif-containing protein 72 OS=Mus
           musculus GN=Trim72 PE=2 SV=1
          Length = 477

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
 Frame = -2

Query: 351 ACQRGDKPW-VLEHRVSVVEEQVRRFNVSPSDR----RPFLCVDSISCCEQMKRVEADLA 187
           AC R +K   VLEH++  VEE VR+F  +  ++    R FL     S   + +RV  D  
Sbjct: 143 ACMRKEKTVAVLEHQLVEVEETVRQFRGAVGEQLGKMRMFLAALESSLDREAERVRGDAG 202

Query: 186 DTRKVLKRLLANQVEIMQRLDTLHSI 109
                L+R L++    +++L  +  +
Sbjct: 203 ---VALRRELSSLNSYLEQLRQMEKV 225


>sp|Q94F08|HIPL2_ARATH HIPL2 protein OS=Arabidopsis thaliana
           GN=HIPL2 PE=1 SV=2
          Length = 696

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +2

Query: 167 FNTLRVSAKSASTLF---ICSQHEMESTQRKGRLSDGDTLKRLTCSSTTETRCSK 322
           FN++ +S  + S+L    +CS+ +  S Q  G   D  +L  + C+ST++  CSK
Sbjct: 65  FNSMNISDSNCSSLLKSILCSKCDEFSGQLFG--DDDSSLVPILCNSTSQDLCSK 117


>sp|O07532|LYTF_BACSU Endopeptidase lytF OS=Bacillus subtilis
           GN=lytF PE=1 SV=1
          Length = 488

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 393 SSNSISSQETANVSACQRGDKPWVLEHRVSVVEEQVRRFNVSPSD 259
           SS+S +S  T      + GD  WV+  + +V  +Q+R  N   +D
Sbjct: 296 SSSSNASSGTTTTYTVKSGDSLWVIAQKFNVTAQQIREKNNLKTD 340


>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltlii
           PE=1 SV=2
          Length = 625

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 457 VTLPCCTALAKEPRFKRCSHG--KFQLDQLSRDCKCFSLPE 341
           +T P C +L KEP    C H   K  +D+       FS PE
Sbjct: 161 LTCPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPE 201
tr_hit_id A8BI23
Definition tr|A8BI23|A8BI23_GIALA Spindle pole protein, putative OS=Giardia lamblia ATCC 50803
Align length 105
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916005|Adiantum capillus-veneris mRNA, clone:
YMU001_000081_G11.
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8BI23|A8BI23_GIALA Spindle pole protein, putative OS=Giardia...    38   0.29 
tr|Q4HRB2|Q4HRB2_CAMUP Putative uncharacterized protein OS=Campy...    35   1.4  
tr|B4KCL4|B4KCL4_DROMO GI23102 OS=Drosophila mojavensis GN=GI231...    34   3.2  
tr|B3QKZ7|B3QKZ7_CHLP8 Superfamily I DNA and RNA helicase and he...    33   5.5  
tr|Q5XK73|Q5XK73_XENLA MGC98839 protein OS=Xenopus laevis GN=MGC...    33   7.1  
tr|B8HMI3|B8HMI3_9CHRO Diguanylate cyclase/phosphodiesterase wit...    33   9.3  

>tr|A8BI23|A8BI23_GIALA Spindle pole protein, putative OS=Giardia
            lamblia ATCC 50803 GN=GL50803_96018 PE=4 SV=1
          Length = 1299

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 23/105 (21%), Positives = 45/105 (42%)
 Frame = -2

Query: 390  SNSISSQETANVSACQRGDKPWVLEHRVSVVEEQVRRFNVSPSDRRPFLCVDSISCCEQM 211
            +  + S ETA  +       P  +        + + R  V   D    L  +++S  E++
Sbjct: 693  NRELLSMETALEALQTAPAPPLTVSSATQTEHDFLERETVVKDDLAQDLAAENVSLMERL 752

Query: 210  KRVEADLADTRKVLKRLLANQVEIMQRLDTLHSIRHGLFNTYNSL 76
            + +  +L DT    ++ +   VE+ ++ DTLH+  +    TY  L
Sbjct: 753  RLLSEELLDTSAEKEKAVNEAVELQKKYDTLHAYAYSQHATYTQL 797


>tr|Q4HRB2|Q4HRB2_CAMUP Putative uncharacterized protein
           OS=Campylobacter upsaliensis RM3195 GN=CUP0596 PE=4 SV=1
          Length = 232

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -2

Query: 216 QMKRVEADLADT---RKVLKRLLANQVEIMQRLDTLHSIRHGLFNTYNSLYLVVYPYCGN 46
           Q+K  E  L DT    K +K L  +   I Q L  L+S+   + N YN+L  +   + GN
Sbjct: 40  QIKEYEQMLKDTLNFEKQMKELGVDMTSITQILGDLNSMVSDMQNIYNNLTNIPDDFLGN 99

Query: 45  LSVLLRGYLFVMTQ 4
           +  +    LF+ TQ
Sbjct: 100 IDQVKNACLFLQTQ 113


>tr|B4KCL4|B4KCL4_DROMO GI23102 OS=Drosophila mojavensis GN=GI23102
           PE=4 SV=1
          Length = 333

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 4/131 (3%)
 Frame = -2

Query: 444 VALLWQRSLVLRGVPMGSSNS----ISSQETANVSACQRGDKPWVLEHRVSVVEEQVRRF 277
           V +  +R+ VLR V    +      +  +E ANV A +R   P +L+H + +  + +++ 
Sbjct: 25  VVIQSERAAVLRNVTCPKAQYHFVVLPKEEIANVLALKREHLP-LLDHMMDLANDVIKQQ 83

Query: 276 NVSPSDRRPFLCVDSISCCEQMKRVEADLADTRKVLKRLLANQVEIMQRLDTLHSIRHGL 97
            +SPSD R    +DS      M  +  D   +              M+R+   ++    L
Sbjct: 84  QLSPSDFRIGFKIDSFMNRLNMHVISNDFYSSS-------------MRRIQHWNTFNSDL 130

Query: 96  FNTYNSLYLVV 64
           F T+ ++Y ++
Sbjct: 131 FITFQAIYALL 141


>tr|B3QKZ7|B3QKZ7_CHLP8 Superfamily I DNA and RNA helicase and
            helicase subunit OS=Chlorobaculum parvum (strain NCIB
            8327) GN=Cpar_0361 PE=4 SV=1
          Length = 1742

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/91 (27%), Positives = 39/91 (42%)
 Frame = -2

Query: 429  QRSLVLRGVPMGSSNSISSQETANVSACQRGDKPWVLEHRVSVVEEQVRRFNVSPSDRRP 250
            +R   + G P+ +S S SS       A   GDK WV+  +V V   ++    V P D   
Sbjct: 1609 ERGPSVLGAPLRNSPSQSSSALETAVARALGDKGWVVHSQVGVSAYRIDLGIVHPDDPNR 1668

Query: 249  FLCVDSISCCEQMKRVEADLADTRKVLKRLL 157
            +L    + C   M R     A+  K+ + +L
Sbjct: 1669 YLA--GVECDGSMYRSATFAAERDKIRQSVL 1697


>tr|Q5XK73|Q5XK73_XENLA MGC98839 protein OS=Xenopus laevis
           GN=MGC98839 PE=2 SV=1
          Length = 648

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
 Frame = +2

Query: 185 SAKSASTLFICSQHEMESTQRKGRLSDGDTLKRLTCSSTTETRCSKTHGLSPLWQAETF- 361
           S +  +TL  C   E    Q++G +   +  K L C      + +    L P+W    F 
Sbjct: 404 SVQKINTLIHCQWCEERIFQKEGNMVQENPYKNLPCDCQKSMQGNSAVVLGPMWSGSLFN 463

Query: 362 -----AVS*ELIELELPMGTPLKTRLLCQSSATRESNF 460
                 +  E +E E+    PL   L+C++  T    F
Sbjct: 464 TGFLRRMMSESVEHEMDDLHPLLKTLICEAECTPLKQF 501


>tr|B8HMI3|B8HMI3_9CHRO Diguanylate cyclase/phosphodiesterase with
           PAS/PAC and GAF sensor(S) OS=Cyanothece sp. PCC 7425
           GN=Cyan7425_1219 PE=4 SV=1
          Length = 792

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = -2

Query: 330 PWVLEHRVSVVEEQVR--RFNVSPSDRRP--FLCVDSISCCEQMKRVEADLADTRKVL-- 169
           PW  EHR+     Q++  RF++ P  +     +C   I      KR E++     + L  
Sbjct: 108 PWWNEHRLITPSGQLKWLRFSLQPKLQADGTIVCDGMILDISDRKRQESERKQAEQALMK 167

Query: 168 -KRLLANQVEIMQRLDTLHSIRHGLFN 91
            +R L+  VEI QRL  L+S     +N
Sbjct: 168 RERYLSTLVEIQQRLLALNSSEGNFYN 194