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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916019
Clone id YMU001_000082_A08
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCACATTGGCTCCCAGAAATAGATTTCCATCAATCCTTACAATAGGCTGTTCAGAAATTC
TAGCAACACCATCTACGATGAGATCGCATTCCTAGCAACAGCTGTAATCAAAACGCTAAC
ATACACTGACGTGATAGATCGGCTTACACTATCTGCACAAAACTAAGAAGCCACATCACA
TCGGCTCCTAGAAATAGATTCCCGTCAATCCTATCCTAGCAACACCATCTACAGTTAGCA
GAGCAATGAGGAGTAGGCTATCCTCGAACAGCAAAATGCAGCGACACAAACTTGGATATT
CCTGCCGTGCTGTCTGCTTGAAGTTGGATCTGCAGTATCAAACACACCGTCAGACTCTCT
CCTTCAAAGTCCATGCAGAGTTACAACCTGTTGATACTCAGCTTCCCAAGACTGGGTCTT
ATGCCATA
■■Homology search results ■■ -
sp_hit_id Q851L8
Definition sp|Q851L8|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica
Align length 60
Score (bit) 32.0
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916019|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_A08.
         (428 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q851L8|CESA5_ORYSJ Probable cellulose synthase A catalytic su...    32   1.1  
sp|A2XNT2|CESA5_ORYSI Probable cellulose synthase A catalytic su...    32   1.1  
sp|Q69V23|CESA3_ORYSJ Probable cellulose synthase A catalytic su...    32   1.1  
sp|Q84M43|CESA2_ORYSJ Probable cellulose synthase A catalytic su...    30   3.1  
sp|A2XN66|CESA2_ORYSI Probable cellulose synthase A catalytic su...    30   3.1  
sp|Q9SKJ5|CESAA_ARATH Probable cellulose synthase A catalytic su...    30   5.3  
sp|Q6YVM4|CESA6_ORYSJ Probable cellulose synthase A catalytic su...    30   5.3  
sp|Q9SJ22|CESA9_ARATH Probable cellulose synthase A catalytic su...    29   7.0  

>sp|Q851L8|CESA5_ORYSJ Probable cellulose synthase A catalytic
           subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica
           GN=CESA5 PE=2 SV=1
          Length = 1092

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 245 NEE*AILEQQNAAT---QTWIFLPCCLLEVGSAVSNTPSDSLLQSPCRVTTC*YSASQDW 415
           NE+  I+ QQ       Q+ +F+   LLE G  + +    SLL+    V +C Y    DW
Sbjct: 719 NEKAGIVNQQKLEKKFGQSSVFVASTLLENGGTLKSASPASLLKEAIHVISCGYEDKTDW 778


>sp|A2XNT2|CESA5_ORYSI Probable cellulose synthase A catalytic
           subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica
           GN=CESA5 PE=2 SV=1
          Length = 1092

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 245 NEE*AILEQQNAAT---QTWIFLPCCLLEVGSAVSNTPSDSLLQSPCRVTTC*YSASQDW 415
           NE+  I+ QQ       Q+ +F+   LLE G  + +    SLL+    V +C Y    DW
Sbjct: 719 NEKAGIVNQQKLEKKFGQSSVFVASTLLENGGTLKSASPASLLKEAIHVISCGYEDKTDW 778


>sp|Q69V23|CESA3_ORYSJ Probable cellulose synthase A catalytic
           subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica
           GN=CESA3 PE=2 SV=1
          Length = 1093

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 245 NEE*AILEQQNAAT---QTWIFLPCCLLEVGSAVSNTPSDSLLQSPCRVTTC*YSASQDW 415
           NE+  I+ QQ       Q+ +F+   LLE G  + +    SLL+    V +C Y    DW
Sbjct: 720 NEKAGIVNQQKLEKKFGQSSVFVASTLLENGGTLKSASPASLLKEAIHVISCGYEDKTDW 779


>sp|Q84M43|CESA2_ORYSJ Probable cellulose synthase A catalytic
           subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica
           GN=CESA2 PE=2 SV=1
          Length = 1073

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 287 QTWIFLPCCLLEVGSAVSNTPSDSLLQSPCRVTTC*YSASQDW 415
           Q+ +F+   L+E G    +   +SLL+    V +C Y    DW
Sbjct: 717 QSSVFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKSDW 759


>sp|A2XN66|CESA2_ORYSI Probable cellulose synthase A catalytic
           subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica
           GN=CESA2 PE=2 SV=1
          Length = 1073

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 287 QTWIFLPCCLLEVGSAVSNTPSDSLLQSPCRVTTC*YSASQDW 415
           Q+ +F+   L+E G    +   +SLL+    V +C Y    DW
Sbjct: 717 QSSVFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKSDW 759


>sp|Q9SKJ5|CESAA_ARATH Probable cellulose synthase A catalytic
           subunit 10 [UDP-forming] OS=Arabidopsis thaliana
           GN=CESA10 PE=2 SV=1
          Length = 1065

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 287 QTWIFLPCCLLEVGSAVSNTPSDSLLQSPCRVTTC*YSASQDW 415
           Q+ +F+    +E G   S T   +LL+    V +C Y A  DW
Sbjct: 711 QSPVFIAATFMEQGGLPSTTNPLTLLKEAIHVISCGYEAKTDW 753


>sp|Q6YVM4|CESA6_ORYSJ Probable cellulose synthase A catalytic
           subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica
           GN=CESA6 PE=2 SV=1
          Length = 1092

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 287 QTWIFLPCCLLEVGSAVSNTPSDSLLQSPCRVTTC*YSASQDW 415
           Q+ +F+   LLE G  + +    SLL+    V +C Y    DW
Sbjct: 736 QSSVFVASTLLENGGTLKSASPASLLKEAIHVISCGYEDKTDW 778


>sp|Q9SJ22|CESA9_ARATH Probable cellulose synthase A catalytic
           subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9
           PE=2 SV=1
          Length = 1088

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 239 QSNEE*AILEQQNAATQTWIFLPCCLLEVGSAVSNTPSDSLLQSPCRVTTC*YSASQDW 415
           ++N E A L+ +    Q+ + +   LL  G   SN    SLL+   +V +C Y    +W
Sbjct: 716 ENNSETAQLKLEKKFGQSPVLVASTLLLNGGVPSNVNPASLLRESIQVISCGYEEKTEW 774
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916019|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_A08.
         (428 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******