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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916028
Clone id YMU001_000082_B07
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTAACAGGCCCTGAATGACTTGGGCATGCCAAACCTGCTTTCCTTGTCATACCCATCTCC
TCTGCACGAATACCCAACTTTGATGAAATTTGCACAGGCTCCTGGATCAAAGAAAACCAG
CATTGTGTGGTCTCTAACTTTGCCCCAAGCTCTGCATCGTTTCGTGGCATCTATGTTTGT
CTGGTCTCTAACTTTACCCCAAGCTCTGCACAGTTTCGTGGCATCTATGTTTGGCTGGTC
CCAACCAAATCTGGGACAAGTCTCGCGCTCGGCTTTGGCTTCTTCCCTTTATGGTCCGAC
TTGTCATCCTTATCCTGTGACTTCTTTTGTGGGCATTCATTTGCAAAATGTCCTTCCTCT
TCACGAATGTAGCATTTCTTGGCCTCCCTAAGAGCTTTCCTTTCTTCAAAGATTTTGCTA
GAAAAATGCCTTT
■■Homology search results ■■ -
sp_hit_id Q7TD09
Definition sp|Q7TD09|CAPSD_CYLCV Capsid protein OS=Cestrum yellow leaf curling virus
Align length 19
Score (bit) 31.2
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916028|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_B07.
         (433 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TD09|CAPSD_CYLCV Capsid protein OS=Cestrum yellow leaf curl...    31   1.9  
sp|P09519|CAPSD_FMVD Probable capsid protein OS=Figwort mosaic v...    30   4.2  
sp|P19199|POL_COYMV Putative polyprotein OS=Commelina yellow mot...    30   5.5  
sp|Q80ZN9|CX6B2_MOUSE Cytochrome c oxidase subunit VIb isoform 2...    30   5.6  
sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform vi...    29   7.1  
sp|Q9LRL9|CRR20_ARATH Putative cysteine-rich repeat secretory pr...    29   7.3  
sp|Q7VBC2|PCBH_PROMA Divinyl chlorophyll a/b light-harvesting pr...    29   9.6  
sp|O79677|NU4M_PELSU NADH-ubiquinone oxidoreductase chain 4 OS=P...    29   9.6  
sp|Q3AKV6|GLGB_SYNSC 1,4-alpha-glucan-branching enzyme OS=Synech...    29   9.6  
sp|Q3AYE2|GLGB_SYNS9 1,4-alpha-glucan-branching enzyme OS=Synech...    29   9.6  
sp|Q4P2W6|ALG10_USTMA Alpha-1,2 glucosyltransferase ALG10 OS=Ust...    29   9.6  
sp|A5FNY7|ACCA_FLAJ1 Acetyl-coenzyme A carboxylase carboxyl tran...    29   9.6  

>sp|Q7TD09|CAPSD_CYLCV Capsid protein OS=Cestrum yellow leaf curling
           virus GN=ORF IV PE=3 SV=1
          Length = 501

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -3

Query: 389 REAKKCYIREEEGHFANEC 333
           +++ KC+I  EEGH+ANEC
Sbjct: 428 KKSCKCWICHEEGHYANEC 446


>sp|P09519|CAPSD_FMVD Probable capsid protein OS=Figwort mosaic
           virus (strain DxS) GN=ORF IV PE=3 SV=1
          Length = 489

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 389 REAKKCYIREEEGHFANEC 333
           R+  +C+I  EEGH+ANEC
Sbjct: 406 RKKCRCWICTEEGHYANEC 424


>sp|P19199|POL_COYMV Putative polyprotein OS=Commelina yellow mottle
           virus PE=4 SV=2
          Length = 1886

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 377 KCYIREEEGHFANEC 333
           KCYI  +EGH+AN+C
Sbjct: 880 KCYICGQEGHYANQC 894


>sp|Q80ZN9|CX6B2_MOUSE Cytochrome c oxidase subunit VIb isoform 2
           OS=Mus musculus GN=Cox6b2 PE=2 SV=1
          Length = 88

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 21/49 (42%), Positives = 25/49 (51%)
 Frame = -1

Query: 181 DKHRCHETMQSLGQS*RPHNAGFL*SRSLCKFHQSWVFVQRRWV*QGKQ 35
           D HRC +TM   G+S +P    F    SLC    SWV   +RW  Q KQ
Sbjct: 38  DYHRCVKTMNRRGKSTQPCEYYFRVFHSLCPI--SWV---QRWNEQIKQ 81


>sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform virus
           (isolate Philippines) PE=1 SV=1
          Length = 1675

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 416 KIFEERKALREAKKCYIREEEGHFANEC 333
           K +  R ++++  +CYI ++E H AN C
Sbjct: 760 KNYVRRPSIKKKCRCYICQDENHLANRC 787


>sp|Q9LRL9|CRR20_ARATH Putative cysteine-rich repeat secretory
           protein 20 OS=Arabidopsis thaliana GN=CRRSP20 PE=5 SV=2
          Length = 266

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 183 QTNIDATKRCRAWGKVRDHTMLVFFDPGACANFIKVGYSCRGDGY 49
           + N++   R  + G  R    LVF   G+  NF+ + Y CRGD Y
Sbjct: 59  EKNLNIIIRASSAGDFRSGFDLVFRGKGS--NFVTLMYQCRGDSY 101


>sp|Q7VBC2|PCBH_PROMA Divinyl chlorophyll a/b light-harvesting
           protein pcbH OS=Prochlorococcus marinus GN=pcbH PE=2
           SV=1
          Length = 352

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
 Frame = +1

Query: 22  GHAKPAFLVIPISSARIPNFDEICTGSWIKENQHCVVSNFAPSSASFRGIYVC-LVSNFT 198
           GHA  AFL I   +  I        G + K     ++S  A  S S  G+++  +V+ F 
Sbjct: 205 GHAFLAFLQISGGAFHIATRQ---IGEYTKFKGDGLLSAEAVLSWSLAGLFLMGVVAAFW 261

Query: 199 PSSAQFRGIYVWLVPTK-SGTSLALGFGFFPLWSDLSSLS-CDFFCGHS 339
            +S         + PT+  G  L   FG  P W+D    S C +F GH+
Sbjct: 262 AASN------TTVYPTEWYGEPLEFKFGISPYWADTGDTSDCKYFFGHT 304


>sp|O79677|NU4M_PELSU NADH-ubiquinone oxidoreductase chain 4
           OS=Pelomedusa subrufa GN=MT-ND4 PE=3 SV=1
          Length = 459

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
 Frame = +2

Query: 65  HEYPTLMKFAQAPGSKKTSIVWSLTLPQALHRFVASMFVW-------SLTLPQALH---- 211
           H   + M F  A  + + +   +L L  ++   +  M +W       ++ LP  ++    
Sbjct: 320 HGLSSSMLFCLANTNYERTHNRTLLLTHSMQTLLPLMTIWWLLASLMNMALPPTINLMGE 379

Query: 212 -SFVASMFGWSQPNLGQVSRSALASSLYGPTCHPYPVTSFVGI---HLQNVLPLH 364
            + +AS+F W+   +       L S+LY  + H +  T + G    H+  + P H
Sbjct: 380 LTIIASLFSWANITIILTGLGTLISALY--SLHMFSTTQWGGTPPHHMHTITPSH 432


>sp|Q3AKV6|GLGB_SYNSC 1,4-alpha-glucan-branching enzyme
           OS=Synechococcus sp. (strain CC9605) GN=glgB PE=3 SV=1
          Length = 765

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 103 WI--KENQHCVVSNFAPSSASFRGIYVCLVSNFTPSS 207
           WI   +N+H V+S     SAS  G ++ +V+NFTP S
Sbjct: 652 WIDCNDNRHSVISFMRRESAS--GTWLVVVANFTPQS 686


>sp|Q3AYE2|GLGB_SYNS9 1,4-alpha-glucan-branching enzyme
           OS=Synechococcus sp. (strain CC9902) GN=glgB PE=3 SV=1
          Length = 764

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 103 WI--KENQHCVVSNFAPSSASFRGIYVCLVSNFTPSS 207
           WI   +N+H V+S     SAS  G ++ +V+NFTP S
Sbjct: 652 WIDCNDNRHSVISFMRRDSAS--GTWLVVVANFTPQS 686
tr_hit_id Q91B29
Definition tr|Q91B29|Q91B29_9VIRU Putative uncharacterized protein OS=Citrus yellow mosaic virus
Align length 33
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916028|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_B07.
         (433 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q91B29|Q91B29_9VIRU Putative uncharacterized protein OS=Citru...    34   3.2  
tr|B5TE89|B5TE89_9VIRU Putative uncharacterized protein OS=Citru...    34   4.2  
tr|B2L8N2|B2L8N2_9VIRU Polyprotein OS=Citrus yellow mosaic virus...    34   4.2  
tr|B2L8M6|B2L8M6_9VIRU Polyprotein OS=Citrus yellow mosaic virus...    34   4.2  
tr|A1TQ72|A1TQ72_ACIAC Binding-protein-dependent transport syste...    33   5.4  
tr|B6PRX4|B6PRX4_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  
tr|B6MU35|B6MU35_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|A3XJM2|A3XJM2_9FLAO Dipeptide ABC transporter (Permease) OS=L...    33   9.3  
tr|Q5TJI5|Q5TJI5_9VIRU Polyprotein OS=Cacao swollen shoot virus ...    33   9.3  
tr|Q5EP42|Q5EP42_9VIRU ORF III polyprotein OS=Banana streak Mys ...    33   9.3  
tr|Q4Y0X3|Q4Y0X3_PLACH Putative uncharacterized protein (Fragmen...    33   9.3  

>tr|Q91B29|Q91B29_9VIRU Putative uncharacterized protein OS=Citrus
            yellow mosaic virus PE=4 SV=1
          Length = 1983

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 428  HFSSKIFEERKALREAK-KCYIREEEGHFANEC 333
            H +    E+ K LR  K KCY+  EEGHFA EC
Sbjct: 910  HSTHARIEKTKHLRNKKCKCYLCGEEGHFAREC 942


>tr|B5TE89|B5TE89_9VIRU Putative uncharacterized protein OS=Citrus
           yellow mosaic virus PE=4 SV=1
          Length = 1490

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 428 HFSSKIFEERKALREAK-KCYIREEEGHFANEC 333
           H +    E+ K LR  K KCY+  EEGHFA EC
Sbjct: 418 HNTHARIEKTKHLRNKKCKCYLCGEEGHFAREC 450


>tr|B2L8N2|B2L8N2_9VIRU Polyprotein OS=Citrus yellow mosaic virus PE=4
            SV=1
          Length = 1979

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 428  HFSSKIFEERKALREAK-KCYIREEEGHFANEC 333
            H +    E+ K LR  K KCY+  EEGHFA EC
Sbjct: 902  HNTHARIEKTKHLRNKKCKCYLCGEEGHFAREC 934


>tr|B2L8M6|B2L8M6_9VIRU Polyprotein OS=Citrus yellow mosaic virus PE=4
            SV=1
          Length = 1976

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 428  HFSSKIFEERKALREAK-KCYIREEEGHFANEC 333
            H +    E+ K LR  K KCY+  EEGHFA EC
Sbjct: 902  HNTHARIEKTKHLRNKKCKCYLCGEEGHFAREC 934


>tr|A1TQ72|A1TQ72_ACIAC Binding-protein-dependent transport systems
           inner membrane component OS=Acidovorax avenae subsp.
           citrulli (strain AAC00-1) GN=Aave_2537 PE=3 SV=1
          Length = 221

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +2

Query: 74  PTLMKFAQAPGSKKTSIVWSLTLPQALHRFVASMFVWSLTL 196
           P L++ AQA G+  + IVW + LP+AL   VA + +  ++L
Sbjct: 121 PGLIEAAQAMGATTSQIVWKVLLPEALPGIVAGLTITFVSL 161


>tr|B6PRX4|B6PRX4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_110232 PE=4 SV=1
          Length = 197

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +2

Query: 89  FAQAPGSKKTSIVWSLTLPQAL-HRFVASM------FVWSLTLPQALHSFVASMFGWS 241
           F Q  G+   + VWS+TL  +L HRFV          VWS+TL  +L       FG S
Sbjct: 89  FVQQFGASLCAAVWSITLCSSLEHRFVQQFGASLCAAVWSITLCSSLEHHFVQQFGAS 146


>tr|B6MU35|B6MU35_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_124711 PE=4 SV=1
          Length = 3977

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -3

Query: 158  DAELGAKLETTQ-----CWFSLIQEPVQISSKLGIRAEEMGMTRKAGLACPSHSGP 6
            D E G ++   Q     C+ SL Q  + +   +G R EE   T+  G +CPSH+GP
Sbjct: 3467 DEERGPQVRVLQGKEPPCFLSLFQGGMVVH--IGKREEEDTNTQDTGASCPSHTGP 3520


>tr|A3XJM2|A3XJM2_9FLAO Dipeptide ABC transporter (Permease)
           OS=Leeuwenhoekiella blandensis MED217 GN=MED217_04457
           PE=3 SV=1
          Length = 340

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +2

Query: 83  MKFAQAPGSKKTSIVWSLTLPQALHRFVASMFVWSLTLPQALHSFVASMFGWS 241
           ++ AQA G  +T IVW   L  AL+  V ++  W  ++  A   FV  +FGW+
Sbjct: 239 IRTAQAKGLSQTQIVWRHALKNALNPVVTAVSGWFASM-LAGAVFVEYIFGWN 290


>tr|Q5TJI5|Q5TJI5_9VIRU Polyprotein OS=Cacao swollen shoot virus
           PE=4 SV=1
          Length = 1816

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 428 HFSSKIFEERKALREAKKC--YIREEEGHFANEC 333
           H S    E+RK L   KKC  Y+  +EGHFA EC
Sbjct: 772 HASHARIEKRKHLIRNKKCKCYLCGDEGHFAREC 805


>tr|Q5EP42|Q5EP42_9VIRU ORF III polyprotein OS=Banana streak Mys
           virus PE=4 SV=1
          Length = 1869

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 407 EERKALREAK-KCYIREEEGHFANEC 333
           ++RK LR  K KCY   EEGH+A+EC
Sbjct: 751 DKRKYLRNKKCKCYACGEEGHYASEC 776