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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916030
Clone id YMU001_000082_B10
Library
Length 316
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTTTCTCTTATCAAAAGAATCCACAGCTTTTGATTTGTGGGAGACATACCTTGCTCTCA
TTCTCCACAGTTACACTATTCTAGGCACCGTTTCAAGGTATGATGAAGGTGGCCCCATTC
AACTGATTTCAAGGTATGATGAAGGTAGCCAATCTCACCCAAACAATTACCACACTAGTA
GACATCATCTTCAACTGTAGAGTCCATAAACTGAAGGCACCAACTTCTTGAAGCAACGTT
ATATTTTCCGTTTGATTGGGCCTTGAGAACTTCACCTGCACATCTCTCTCTCTCCCTACA
GCTTGATTCTGCTTCG
■■Homology search results ■■ -
sp_hit_id A6RPB6
Definition sp|A6RPB6|MSH3_BOTFB DNA mismatch repair protein msh3 OS=Botryotinia fuckeliana (strain B05.10)
Align length 37
Score (bit) 28.9
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916030|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_B10.
         (316 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6RPB6|MSH3_BOTFB DNA mismatch repair protein msh3 OS=Botryot...    29   8.3  

>sp|A6RPB6|MSH3_BOTFB DNA mismatch repair protein msh3
           OS=Botryotinia fuckeliana (strain B05.10) GN=msh3 PE=3
           SV=2
          Length = 1133

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 182 TSSSTVESIN*RHQLLEATL---YFPFDWALRTSPAH 283
           TSS+ +  I  RH ++E  L   Y P D +L TSP H
Sbjct: 849 TSSTEISVIGGRHPMVEQLLPSAYIPNDTSLSTSPDH 885
tr_hit_id A8FWU2
Definition tr|A8FWU2|A8FWU2_SHESH Cytochrome c3 OS=Shewanella sediminis (strain HAW-EB3)
Align length 39
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916030|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_B10.
         (316 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8FWU2|A8FWU2_SHESH Cytochrome c3 OS=Shewanella sediminis (st...    33   9.3  

>tr|A8FWU2|A8FWU2_SHESH Cytochrome c3 OS=Shewanella sediminis
           (strain HAW-EB3) GN=Ssed_2708 PE=3 SV=1
          Length = 136

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 144 LHHTLKSVEWGHLHHTLKRCLE*CNCGE*EQGMSPTNQK 28
           +H T K VE+ HL HT   C + C+    E+GMS T+ K
Sbjct: 35  MHETSKPVEFDHLRHTQVECTQ-CHHKNEERGMSFTSYK 72