NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916035
Clone id YMU001_000082_C05
Library
Length 451
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATAAGACCCACAACAATAGGCCCTCAGAGACCCACTATGTGACTGAGATAATGTATATC
CCAGTCCTACAATAAATTCCCAATCACATGGTAAAATTTTGAAGATGGCTATACATCTGT
TGCACATATGGAGTACAACCGAAATTTGAAGATGGCGATACATCTGTTGCACATATGCAG
CAAGTATAGATATTCGTGCCTCATGGTAACCATACACATAACCATGTGTTGAATAGGGGC
AATGGTTTCAATCCAGAAACAAAAATCAATAGGAAGCTTCAATAAATGTTTATAGCTCTA
GCAGGCTACTGAACTTGACCAGTGTATACTTCTTGTTGAACACTTAAAACTCTTAACTGA
ACATCACTACGTTGGTGTCGTTGTCGTCGCCGCGGTACTCTCGTACTATACATCCACGGC
TTCTTGGGGACAGGAATAAACTTTACAAAGA
■■Homology search results ■■ -
sp_hit_id Q8TFZ1
Definition sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Aspergillus fumigatus
Align length 52
Score (bit) 29.3
E-value 8.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916035|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_C05.
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Aspergillus fumi...    29   8.2  

>sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Aspergillus
           fumigatus GN=rat1 PE=3 SV=4
          Length = 1058

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 127 YGVQPKFEDGDTSVAHMQQV*IFVPHGNHTHNHVLNRGNGFNPETKINRKLQ 282
           YG+ P  ED  +   + +     +P  NH H  +L RG  FNP    N  +Q
Sbjct: 830 YGM-PSLEDDRSLTVNYE-----IPKSNHVHKSMLLRGVKFNPPALDNADIQ 875
tr_hit_id Q9XTF8
Definition tr|Q9XTF8|Q9XTF8_CAEEL Protein VF11C1L.1, partially confirmed by transcript evidence OS=Caenorhabditis elegans
Align length 88
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916035|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_C05.
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9XTF8|Q9XTF8_CAEEL Protein VF11C1L.1, partially confirmed by...    33   9.3  

>tr|Q9XTF8|Q9XTF8_CAEEL Protein VF11C1L.1, partially confirmed by
            transcript evidence OS=Caenorhabditis elegans GN=ppk-3
            PE=4 SV=3
          Length = 1497

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = -2

Query: 342  CSTRSIHWSSSVAC*SYKHLLKLPIDFCFWIETIAPIQHMVMCMVTMRHEYLYLLHMCN- 166
            CS++ + +  ++   S+   L+   + CF  +TI PI +   C     HE LY   M N 
Sbjct: 914  CSSQMVKFDKAIWHLSFAKFLEYIGNSCFTTDTIYPITNQNQCSHCFFHEKLYFFAMDNL 973

Query: 165  -RCIAIFKFRLYSICATDV*PSSKFYHV 85
                 +   R YS+  + +  S K   V
Sbjct: 974  VTTFKVIAIRPYSVVFSPIICSVKVLKV 1001