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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916043
Clone id YMU001_000082_D04
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCAAGCTGAAATGACAACAAAAATTTAGGTAAGAAGACTCAAATGTCTACACCTTTCAA
TGTGATGATGTATTACATGACTCCTTCCAGGAGACCAACTAGGGAATCAAAACTGTTGAT
GGTTGAACTTACAATGCCATCTCACTCTGCAGAAATAATGAGCTGAGCGAGTAGCTAGAA
TCAGCATTCGTATAAAATGCAAGGAATCTCCTTTCATTGAATGGCATACACAGAGGACCA
CTTTTTCCATGGTAAAACCAGTAAGCATTAAGATGCGAGAAACTTGAGGGGTTTTGTCTG
TGCCATTGATGATGGAAAGACGAAGATTTGTATGCAGGCAAGTGACTGCTGGAAGCCAGC
ATTATAACGCTTGGCAATAAGGTTAAATTGAGGGAGTAGCTGGGGGCCAGAAACAATAGG
AACCAGCTTGCATGAGATGACATTCTTGGCGTAA
■■Homology search results ■■ -
sp_hit_id Q5FC78
Definition sp|Q5FC78|YQV8_CAEEL Uncharacterized protein F27E5.8 OS=Caenorhabditis elegans
Align length 68
Score (bit) 31.6
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916043|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_D04.
         (454 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FC78|YQV8_CAEEL Uncharacterized protein F27E5.8 OS=Caenorha...    32   1.7  
sp|Q5R652|RAD17_PONAB Cell cycle checkpoint protein RAD17 OS=Pon...    31   2.2  
sp|Q8WHX1|YCF1_PSINU Putative membrane protein ycf1 OS=Psilotum ...    30   4.8  
sp|Q2UJ16|MED17_ASPOR Mediator of RNA polymerase II transcriptio...    30   6.4  
sp|O75943|RAD17_HUMAN Cell cycle checkpoint protein RAD17 OS=Hom...    29   8.4  
sp|Q9XT62|RAD17_CERAE Cell cycle checkpoint protein RAD17 OS=Cer...    29   8.4  
sp|Q85WL0|MATK_ERYRE Maturase K OS=Erythronium revolutum GN=matK...    29   8.4  
sp|Q85WL2|MATK_ERYGA Maturase K OS=Erythronium grandiflorum GN=m...    29   8.4  

>sp|Q5FC78|YQV8_CAEEL Uncharacterized protein F27E5.8
           OS=Caenorhabditis elegans GN=F27E5.8 PE=2 SV=1
          Length = 349

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -1

Query: 349 AVTCLHTNLRLSIINGTDKTPQVSRILMLTGFTMEKVVLCVCH---SMKGDSLHFIRMLI 179
           + +CLH NLR+ I N       +  ILM  G  M  V LC+ H    M+G SL    ++ 
Sbjct: 56  STSCLHLNLRILICNCC-----LGFILMAVGRAMIAVPLCIAHLRDVMRGASLLMRCIIH 110

Query: 178 LATRSAHY 155
             TR A +
Sbjct: 111 RLTRFAFH 118


>sp|Q5R652|RAD17_PONAB Cell cycle checkpoint protein RAD17 OS=Pongo
           abelii GN=RAD17 PE=2 SV=1
          Length = 681

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -2

Query: 393 PQFNLIAKRYNAGFQQSLACIQIFVFPSSMAQTKPLKFLAS*CLLVLPWKKWSSVYAIQ 217
           PQ+ LI K+Y   +  + A    F  P+   QT+ L +LA   LL +P +  + +  IQ
Sbjct: 527 PQWFLINKKYRENYLAAKALFPDFCLPALCLQTQLLPYLA---LLTIPMRNQAQISFIQ 582


>sp|Q8WHX1|YCF1_PSINU Putative membrane protein ycf1 OS=Psilotum nudum
            GN=ycf1 PE=3 SV=1
          Length = 1703

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
 Frame = -3

Query: 437  SHASWFLLFLAPSYSLNLTLLPSVIMLASSSHLPAYKSSSFHHQWHRQNPS--------- 285
            +HA   +L +  S      +LP +I+  +   +  ++S  +   W   N           
Sbjct: 752  AHAGRGVLLIIQSNIRKYVILPILIICKNIGRIMLFQSPEWKEDWAEWNQEIHIKCTYDG 811

Query: 284  ---SFSHLNAYWFYHGKSGPLCMPFNERRFLAFYTN 186
               S  HL A+WF  G    +  PF+ + +    TN
Sbjct: 812  IEVSHRHLPAHWFKEGLQIKILYPFHLKPWHIHRTN 847


>sp|Q2UJ16|MED17_ASPOR Mediator of RNA polymerase II transcription
           subunit 17 OS=Aspergillus oryzae GN=srb4 PE=3 SV=1
          Length = 638

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 20  KNLGKKTQMSTPFNVMMYYMTPSRRPTRESKLLMVELTMPSHSAEI 157
           +NL ++TQ+ TP       +TP RR T E +LL   +    HS+ +
Sbjct: 372 QNLRRRTQLPTP-------LTPKRRQTPEYQLLRPVMAYLQHSSHV 410


>sp|O75943|RAD17_HUMAN Cell cycle checkpoint protein RAD17 OS=Homo
           sapiens GN=RAD17 PE=1 SV=2
          Length = 681

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 393 PQFNLIAKRYNAGFQQSLACIQIFVFPSSMAQTKPLKFLAS*CLLVLPWKKWSSVYAIQ 217
           PQ+ LI K+Y      + A    F  P+   QT+ L +LA   LL +P +  + +  IQ
Sbjct: 527 PQWFLINKKYRENCLAAKALFPDFCLPALCLQTQLLPYLA---LLTIPMRNQAQISFIQ 582


>sp|Q9XT62|RAD17_CERAE Cell cycle checkpoint protein RAD17
           OS=Cercopithecus aethiops GN=RAD17 PE=1 SV=1
          Length = 670

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 393 PQFNLIAKRYNAGFQQSLACIQIFVFPSSMAQTKPLKFLAS*CLLVLPWKKWSSVYAIQ 217
           PQ+ LI K+Y      + A    F  P+   QT+ L +LA   LL +P +  + +  IQ
Sbjct: 516 PQWFLIYKKYRENCLAAKALFPDFCLPALCLQTQLLPYLA---LLTIPMRNQAQISFIQ 571


>sp|Q85WL0|MATK_ERYRE Maturase K OS=Erythronium revolutum GN=matK
           PE=3 SV=1
          Length = 514

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
 Frame = -1

Query: 250 MEKVVLCVCHSM-------KGDSLHFIRM---LILATRSAHYFCRVRWHCKFNHQQF*FP 101
           ME +++  C++        K   +H++R     ILA+R AH   +   +   N  Q+ F 
Sbjct: 258 MEHIIIVCCNNFQKTLWPFKDPFMHYVRYQGKAILASRGAHLLMKKWRYYLVNFWQYYFH 317

Query: 100 SWS-PGRSHV 74
            WS P R H+
Sbjct: 318 FWSQPYRMHI 327


>sp|Q85WL2|MATK_ERYGA Maturase K OS=Erythronium grandiflorum GN=matK
           PE=3 SV=1
          Length = 514

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
 Frame = -1

Query: 250 MEKVVLCVCHSM-------KGDSLHFIRM---LILATRSAHYFCRVRWHCKFNHQQF*FP 101
           ME +++  C++        K   +H++R     ILA+R AH   +   +   N  Q+ F 
Sbjct: 258 MEHIIIVCCNNFQKTLWPFKDPFMHYVRYQGKAILASRGAHLLMKKWRYYLVNFWQYYFH 317

Query: 100 SWS-PGRSHV 74
            WS P R H+
Sbjct: 318 FWSQPYRMHI 327
tr_hit_id Q9FKY7
Definition tr|Q9FKY7|Q9FKY7_ARATH Genomic DNA, chromosome 5, TAC clone:K2A18 OS=Arabidopsis thaliana
Align length 55
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916043|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_D04.
         (454 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FKY7|Q9FKY7_ARATH Genomic DNA, chromosome 5, TAC clone:K2A1...    47   5e-04
tr|Q8L614|Q8L614_ARATH Putative uncharacterized protein At5g6595...    47   5e-04
tr|A5B032|A5B032_VITVI Putative uncharacterized protein OS=Vitis...    45   0.001
tr|Q69VK3|Q69VK3_ORYSJ Putative uncharacterized protein OJ1479_B...    42   0.020
tr|A3AAP1|A3AAP1_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.020
tr|A2X8W8|A2X8W8_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.020
tr|A7BTV4|A7BTV4_9GAMM Putative uncharacterized protein OS=Beggi...    33   9.3  

>tr|Q9FKY7|Q9FKY7_ARATH Genomic DNA, chromosome 5, TAC clone:K2A18
            OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1194

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = -2

Query: 450  AKNVISCKLVPIVSGPQLLPQFNLIAKRYNAGFQQSLACIQIFVFPSSMAQTKPL 286
            +++V+S KLVP+  G Q LP+  L + RY A FQ S     +FVFPS+    K +
Sbjct: 1136 SEHVLSYKLVPLTCGEQQLPKITLTSARYAAEFQPSAVASSVFVFPSAPQAEKAI 1190


>tr|Q8L614|Q8L614_ARATH Putative uncharacterized protein At5g65950
           OS=Arabidopsis thaliana GN=At5g65950 PE=2 SV=1
          Length = 865

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = -2

Query: 450 AKNVISCKLVPIVSGPQLLPQFNLIAKRYNAGFQQSLACIQIFVFPSSMAQTKPL 286
           +++V+S KLVP+  G Q LP+  L + RY A FQ S     +FVFPS+    K +
Sbjct: 807 SEHVLSYKLVPLTCGEQQLPKITLTSARYAAEFQPSAVASSVFVFPSAPQAEKAI 861


>tr|A5B032|A5B032_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_007638 PE=4 SV=1
          Length = 962

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = -2

Query: 438  ISCKLVPIVSGPQLLPQFNLIAKRYNAGFQQSLACIQIFVFP 313
            +S  LVP+ SG Q LP+  + + RY+AGFQ ++A   IFVFP
Sbjct: 916  LSYMLVPLASGSQQLPRVTVTSVRYSAGFQPTIAASTIFVFP 957


>tr|Q69VK3|Q69VK3_ORYSJ Putative uncharacterized protein
           OJ1479_B12.25-2 (Putative uncharacterized protein
           OJ1191_G08.1-2) OS=Oryza sativa subsp. japonica
           GN=OJ1479_B12.25-2 PE=4 SV=1
          Length = 723

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/46 (39%), Positives = 30/46 (65%)
 Frame = -2

Query: 447 KNVISCKLVPIVSGPQLLPQFNLIAKRYNAGFQQSLACIQIFVFPS 310
           ++++S KLVP+ SG Q LP+  + + RY+A    S +   +FV+PS
Sbjct: 660 EHIVSHKLVPLGSGSQQLPRITITSVRYSAALTPSASAATVFVYPS 705


>tr|A3AAP1|A3AAP1_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_007863 PE=4 SV=1
          Length = 1177

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/46 (39%), Positives = 30/46 (65%)
 Frame = -2

Query: 447  KNVISCKLVPIVSGPQLLPQFNLIAKRYNAGFQQSLACIQIFVFPS 310
            ++++S KLVP+ SG Q LP+  + + RY+A    S +   +FV+PS
Sbjct: 1114 EHIVSHKLVPLGSGSQQLPRITITSVRYSAALTPSASAATVFVYPS 1159


>tr|A2X8W8|A2X8W8_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_08680 PE=4 SV=1
          Length = 1177

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/46 (39%), Positives = 30/46 (65%)
 Frame = -2

Query: 447  KNVISCKLVPIVSGPQLLPQFNLIAKRYNAGFQQSLACIQIFVFPS 310
            ++++S KLVP+ SG Q LP+  + + RY+A    S +   +FV+PS
Sbjct: 1114 EHIVSHKLVPLGSGSQQLPRITITSVRYSAALTPSASAATVFVYPS 1159


>tr|A7BTV4|A7BTV4_9GAMM Putative uncharacterized protein
           OS=Beggiatoa sp. PS GN=BGP_1161 PE=4 SV=1
          Length = 630

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 314 HHQWHRQNPSSFSHLNAYWFYHGKSGPL 231
           HHQ    NP+S SH   Y  Y  KSG L
Sbjct: 463 HHQHDENNPASLSHNEVYAIYEDKSGSL 490