NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916058
Clone id YMU001_000082_E10
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATGAAGGCATGTATAGCTAACCTAAGCAGTGTCTTTGCAATAACATTCACGGTCAACAT
ACTCTGAAGGCTCCGACTAAAATTTACGACACCTAACAAACATGTGCCATAAAGAAAACC
TCAACACTTCCAACTCTTCCTGCATCTATGGATTGCCACCTAATGGAGATTTCTGAAATC
AAAAAGCTTCAACATCACTGCAAGAGATGCTTGACACGATTCAAAAAAGGTGCAAGCCCT
TACTTTGACAAAGTTTCTTTAGTGAAAAGTAGCTGCAGAGGCCATTTGATGCAATATTCC
AATGCTATGGACTCCCAGCCATCGTTCAGTTTATTTGAAATATCTCCATGGATGGTCAGA
AGGCGTATGTTCCCTTCAGCACTAGACCTTGGCCTCAAAATCTCTTTGTGTGAGGCTCCC
AAGACGGAAACCCTGGAAACACGAAAGTCTACTGGTCTGCATGCTGCTCGAAGCTGACTT
TGTCTGCTGGTCTGCATGCTCCTTGAGGCCGACTTTGTCGTGGTCACAACACTAAGGCTG
CG
■■Homology search results ■■ -
sp_hit_id Q9M350
Definition sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana
Align length 58
Score (bit) 48.5
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916058|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_E10.
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog O...    49   2e-05
sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog O...    47   8e-05
sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus mu...    35   0.31 
sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo s...    34   0.40 
sp|P40114|TOP1_BACAN DNA topoisomerase 1 OS=Bacillus anthracis G...    32   1.5  
sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo ...    32   2.0  
sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus mu...    32   2.0  
sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo s...    32   2.0  
sp|Q06679|UTP4_YEAST U3 small nucleolar RNA-associated protein 4...    31   3.4  
sp|Q9H489|TSYL3_HUMAN Testis-specific Y-encoded-like protein 3 O...    31   3.4  
sp|Q8T295|PRP8_DICDI Pre-mRNA-processing-splicing factor 8 homol...    31   3.4  
sp|P34477|UBC7_CAEEL Probable ubiquitin-conjugating enzyme E2 7 ...    30   5.8  
sp|Q8CP47|6PGD_STAES 6-phosphogluconate dehydrogenase, decarboxy...    30   9.9  
sp|Q5HP42|6PGD_STAEQ 6-phosphogluconate dehydrogenase, decarboxy...    30   9.9  

>sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog
           OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2
          Length = 745

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 24/58 (41%), Positives = 35/58 (60%)
 Frame = -1

Query: 416 ASHKEILRPRSSAEGNIRLLTIHGDISNKLNDGWESIALEYCIKWPLQLLFTKETLSK 243
           +S  +++R + S  G   L       S+   DGW++IALEY + WP+QL FT+E LSK
Sbjct: 479 SSQADMVRSKVSLTGKANLT------SDTSVDGWDAIALEYSVDWPMQLFFTQEVLSK 530


>sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog
           OS=Medicago truncatula GN=85P PE=2 SV=1
          Length = 739

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 23/48 (47%), Positives = 29/48 (60%)
 Frame = -1

Query: 386 SSAEGNIRLLTIHGDISNKLNDGWESIALEYCIKWPLQLLFTKETLSK 243
           S+A   I   +I    S    DGW+ IALEY I+WPL L FT+E LS+
Sbjct: 472 SAAADGISGASISNASSEMSVDGWDGIALEYSIEWPLHLFFTQEVLSR 519


>sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus
           musculus GN=Tubgcp4 PE=2 SV=2
          Length = 667

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 326 NDGWESIALEYCIKWPLQLLFTKETLSK 243
           + GW ++ L Y ++WPL +LFT   L K
Sbjct: 447 SSGWAALGLSYKVQWPLHILFTPAVLEK 474


>sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo
           sapiens GN=TUBGCP4 PE=1 SV=1
          Length = 667

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 320 GWESIALEYCIKWPLQLLFTKETLSK 243
           GW ++ L Y ++WPL +LFT   L K
Sbjct: 449 GWAALGLSYKVQWPLHILFTPAVLEK 474


>sp|P40114|TOP1_BACAN DNA topoisomerase 1 OS=Bacillus anthracis
           GN=topX PE=3 SV=2
          Length = 870

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 241 YFDKVSLVKSSCRGHLMQYSNAMDSQPSFSLFEI 342
           Y++    + S CRGHL++  N  +  P + LF++
Sbjct: 21  YYENDHYIVSWCRGHLLELKNPEEMDPKYKLFQL 54


>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo
           abelii GN=TUBGCP2 PE=2 SV=1
          Length = 902

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 350 HGDISNKLNDGWESIALEYCIKWPLQLLFTKETLSK 243
           H D +     G E+ + +Y +KWPL L+  ++ L++
Sbjct: 602 HADPTELTLSGLEAFSFDYIVKWPLSLIINRKALTR 637


>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus
           musculus GN=Tubgcp2 PE=2 SV=1
          Length = 905

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 350 HGDISNKLNDGWESIALEYCIKWPLQLLFTKETLSK 243
           H D +     G E+ + +Y +KWPL L+  ++ L++
Sbjct: 602 HADPTELTLSGLEAFSFDYMVKWPLSLIINRKALTR 637


>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo
           sapiens GN=TUBGCP2 PE=1 SV=2
          Length = 902

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 350 HGDISNKLNDGWESIALEYCIKWPLQLLFTKETLSK 243
           H D +     G E+ + +Y +KWPL L+  ++ L++
Sbjct: 602 HADPTELALSGLEAFSFDYIVKWPLSLIINRKALTR 637


>sp|Q06679|UTP4_YEAST U3 small nucleolar RNA-associated protein 4
           OS=Saccharomyces cerevisiae GN=UTP4 PE=1 SV=1
          Length = 776

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
 Frame = -1

Query: 539 SLSVVTTTKSASRSMQ--------TSRQSQLRAACRPVDFRVSRVSVLGASHKEILRPRS 384
           S S+++  K  SRS++        TS++  +   CR VDF  + ++ L  SHK  +   +
Sbjct: 2   SSSLLSVLKEKSRSLKIRNKPVKMTSQERMIVHRCRFVDFTPATITSLAFSHKSNINKLT 61

Query: 383 SAEGNIRLLTIHGDIS--NKLNDGWESIALE 297
            ++  + +   +G+I   N  N+ ++ + +E
Sbjct: 62  PSDLRLAIGRSNGNIEIWNPRNNWFQEMVIE 92


>sp|Q9H489|TSYL3_HUMAN Testis-specific Y-encoded-like protein 3
           OS=Homo sapiens GN=TSPYL3 PE=2 SV=1
          Length = 355

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 148 MDCHLMEISEIKKLQHHCKRCLTRFKKGASPYFDKVSLVKS-SCR 279
           M C+LM + E+++L+H    C  +F+  ++PYF    +VK   CR
Sbjct: 217 MLCYLMNL-EVRELRHSRTGCKFKFRFWSNPYFQNKVIVKEYECR 260
tr_hit_id A9NW25
Definition tr|A9NW25|A9NW25_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 72
Score (bit) 59.3
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916058|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_E10.
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NW25|A9NW25_PICSI Putative uncharacterized protein OS=Picea...    59   1e-07
tr|A9RXH9|A9RXH9_PHYPA Gamma tubulin ring complex protein 4 OS=P...    49   1e-04
tr|Q60F24|Q60F24_ORYSJ Os05g0154500 protein OS=Oryza sativa subs...    49   2e-04
tr|B8AY65|B8AY65_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A3B039|A3B039_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A7Q0E6|A7Q0E6_VITVI Chromosome chr7 scaffold_42, whole genome...    46   0.001
tr|A5BKC3|A5BKC3_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|Q642S3|Q642S3_XENLA MGC81229 protein OS=Xenopus laevis GN=tub...    37   0.51 
tr|B3RSJ9|B3RSJ9_TRIAD Putative uncharacterized protein OS=Trich...    37   0.88 
tr|A7GME9|A7GME9_BACCN DNA topoisomerase I OS=Bacillus cereus su...    36   1.1  
tr|Q05AR5|Q05AR5_XENTR Tubulin, gamma complex associated protein...    36   1.5  
tr|Q8BYN2|Q8BYN2_MOUSE Putative uncharacterized protein OS=Mus m...    36   1.5  
tr|Q8BWR3|Q8BWR3_MOUSE Putative uncharacterized protein OS=Mus m...    36   1.5  
tr|Q8BKL6|Q8BKL6_MOUSE Putative uncharacterized protein OS=Mus m...    36   1.5  
tr|B6L8S9|B6L8S9_BRAFL Putative uncharacterized protein OS=Branc...    35   2.0  
tr|Q543T6|Q543T6_MOUSE Putative uncharacterized protein OS=Mus m...    35   3.3  
tr|Q3U6E9|Q3U6E9_MOUSE Putative uncharacterized protein OS=Mus m...    35   3.3  
tr|Q3TSV8|Q3TSV8_MOUSE Putative uncharacterized protein (Fragmen...    35   3.3  
tr|A2YWR4|A2YWR4_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.3  
tr|Q5NVE4|Q5NVE4_PONAB Putative uncharacterized protein DKFZp459...    34   4.4  
tr|B7NZE4|B7NZE4_RABIT Tubulin, gamma complex associated protein...    34   4.4  
tr|B2KIP3|B2KIP3_RHIFE Gamma-tubulin complex component 4 (Predic...    34   4.4  
tr|B0KWF7|B0KWF7_CALJA Tubulin, gamma complex associated protein...    34   4.4  
tr|A9X1B2|A9X1B2_PAPAN Tubulin, gamma complex associated protein...    34   4.4  
tr|A0JNH5|A0JNH5_BOVIN Tubulin, gamma complex associated protein...    34   4.4  
tr|B6MLL6|B6MLL6_BRAFL Putative uncharacterized protein OS=Branc...    34   4.4  
tr|Q9BVR6|Q9BVR6_HUMAN TUBGCP4 protein OS=Homo sapiens GN=TUBGCP...    34   4.4  
tr|B3KNK6|B3KNK6_HUMAN cDNA FLJ14797 fis, clone NT2RP4001256, hi...    34   4.4  
tr|Q4T698|Q4T698_TETNG Chromosome undetermined SCAF8850, whole g...    34   5.7  
tr|B3DIU9|B3DIU9_DANRE Similar to Gamma tubulin ring complex pro...    34   5.7  

>tr|A9NW25|A9NW25_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 754

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
 Frame = -1

Query: 452 VDFRVSRVSVLGASHKEILRPRSSAEGNIRLLT-IHGDISNKLN-DGWESIALEYCIKWP 279
           V  R+  +     +H +I RP+S+ +G++  L+ ++G+ S   + DGW+ IALEY + WP
Sbjct: 466 VSLRMPSLGSTSTTHGDISRPKSTRDGSLGSLSNMYGNSSAGPSLDGWDGIALEYSVDWP 525

Query: 278 LQLLFTKETLSK 243
           LQLLFT+E L+K
Sbjct: 526 LQLLFTREVLAK 537


>tr|A9RXH9|A9RXH9_PHYPA Gamma tubulin ring complex protein 4
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_206582 PE=4 SV=1
          Length = 735

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = -1

Query: 323 DGWESIALEYCIKWPLQLLFTKETLSK 243
           DGW+ +ALEY I WPLQLLFTK+ LSK
Sbjct: 502 DGWDGLALEYSINWPLQLLFTKDVLSK 528


>tr|Q60F24|Q60F24_ORYSJ Os05g0154500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0059G01.11 PE=4 SV=1
          Length = 754

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -1

Query: 452 VDFRVSRVSVLGASHKEILRPRSSAEGNIRLLTIHGDISNKLN-DGWESIALEYCIKWPL 276
           V  R+S   +  ++ ++ L+  S+ E     ++  G  +++L  DGW+SIALEY + WPL
Sbjct: 469 VSLRMSSFGIKASTSQKDLQKSSTPE-----ISSQGKATSELALDGWDSIALEYSVDWPL 523

Query: 275 QLLFTKETLSK 243
           QL FT + +SK
Sbjct: 524 QLFFTPDVVSK 534


>tr|B8AY65|B8AY65_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18509 PE=4 SV=1
          Length = 762

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -1

Query: 452 VDFRVSRVSVLGASHKEILRPRSSAEGNIRLLTIHGDISNKLN-DGWESIALEYCIKWPL 276
           V  R+S   +  ++ ++ L+  S+ E     ++  G  +++L  DGW+SIALEY + WPL
Sbjct: 469 VSLRMSSFGIKASTSQKDLQKSSTPE-----ISSQGKATSELALDGWDSIALEYSVDWPL 523

Query: 275 QLLFTKETLSK 243
           QL FT + +SK
Sbjct: 524 QLFFTPDVVSK 534


>tr|A3B039|A3B039_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016411 PE=4 SV=1
          Length = 700

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = -1

Query: 452 VDFRVSRVSVLGASHKEILRPRSSAEGNIRLLTIHGDISNKLN-DGWESIALEYCIKWPL 276
           V  R+S   +  ++ ++ L+  S+ E     ++  G  +++L  DGW+SIALEY + WPL
Sbjct: 407 VSLRMSSFGIKASTSQKDLQKSSTPE-----ISSQGKATSELALDGWDSIALEYSVDWPL 461

Query: 275 QLLFTKETLSK 243
           QL FT + +SK
Sbjct: 462 QLFFTPDVVSK 472


>tr|A7Q0E6|A7Q0E6_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028020001
           PE=4 SV=1
          Length = 743

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = -1

Query: 323 DGWESIALEYCIKWPLQLLFTKETLSK 243
           +GW+ IALEY + WPLQL FT+E LSK
Sbjct: 501 EGWDGIALEYSVDWPLQLFFTQEVLSK 527


>tr|A5BKC3|A5BKC3_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_003625 PE=4 SV=1
          Length = 1529

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = -1

Query: 323  DGWESIALEYCIKWPLQLLFTKETLSK 243
            +GW+ IALEY + WPLQL FT+E LSK
Sbjct: 1287 EGWDGIALEYSVDWPLQLFFTQEVLSK 1313


>tr|Q642S3|Q642S3_XENLA MGC81229 protein OS=Xenopus laevis
           GN=tubgcp4 PE=2 SV=1
          Length = 666

 Score = 37.4 bits (85), Expect = 0.51
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 419 GASHKEILRPRSSAEGNIRLLTIHGDISNKL--NDGWESIALEYCIKWPLQLLFTKETLS 246
           G  HK+  +PR   EG  R      D+S +     GW ++ L Y ++WPL +LFT   L 
Sbjct: 422 GKEHKDTSQPR---EGPFR------DMSPREAPTSGWAALGLSYKVQWPLHILFTPAVLE 472

Query: 245 K 243
           K
Sbjct: 473 K 473


>tr|B3RSJ9|B3RSJ9_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_23331 PE=4 SV=1
          Length = 646

 Score = 36.6 bits (83), Expect = 0.88
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = -1

Query: 422 LGASHKEILRPRSSAEGNIRLLTIHGDISNKLNDGWESIALEYCIKWPLQLLFTKETLSK 243
           L   H +I++P    + NI +     D   +   GW  + L+Y ++WPLQL+ TK  L K
Sbjct: 400 LSQFHLKIIQPEVEQK-NIPIEQQESD-REEAECGWTCLNLQYNVQWPLQLILTKPILEK 457

Query: 242 *G-LAPFL---NRVKHLLQ*C 192
              L  FL   NR++  LQ C
Sbjct: 458 YNVLFRFLISVNRIQLELQHC 478


>tr|A7GME9|A7GME9_BACCN DNA topoisomerase I OS=Bacillus cereus
           subsp. cytotoxis (strain NVH 391-98) GN=Bcer98_0977 PE=4
           SV=1
          Length = 96

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 172 SEIKKLQ--HHCKRCLTRFKKGASPYFDKVSLVKSSCRGHLMQYSNAMDSQPSFSLFEI 342
           +EI KL   HH ++ ++     + PY++    + S CRGHL++  N  +  P + +F++
Sbjct: 22  NEIMKLPRFHHSQKYIS-----SKPYYENNHYIVSWCRGHLLELKNPEEMDPMYKVFKL 75