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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916062
Clone id YMU001_000082_F04
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGAAGAATTTGCGGCCGCGAATTCTCTCTCTCTCTCTTTCCTACACATACACACACAA
CAACCTGTTTAAGCCACATTAAATAAAAACCTCCCCAAGCACGTCATCGTTGCAATTGGA
AAATCTCTTTTATAAGTTAAGTACCTAAACAAAGTAGTGACGCTTGCATCTGACCACCCA
TACATTGACTGCAGATTCAAAAATGACAGACAAGTACGAAGCACAGATACTTTTGTGCCT
CCATAGATTGGTTGACGTACCAACTTTCTCAACATGTCTTCAGGAGATAGGCGCATGTCT
TCTCGTGCTGCTTCGTTAGCGTTCTCCTCGCTTGGCTGGAAGAAGGCATCCAACATCTCT
TCCATGCCGTCGTCTTGTGTCTGTAAGCCCTCCTCTGCTTCCATCCTTGGCTTTGGATTG
GTCAGACCTTCACGCATAATCCTTTTTCTCTCTCTCTCAAATGTAGGTGTAATGTCGCGA
AAATCAATGCCCGTTCCGTAGGAGTCGTATCGTAGATTCTGTACGGTTTCTCCAGTAAAC
TCTC
■■Homology search results ■■ -
sp_hit_id A1RWQ1
Definition sp|A1RWQ1|SYA_THEPD Alanyl-tRNA synthetase OS=Thermofilum pendens (strain Hrk 5)
Align length 83
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916062|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F04.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1RWQ1|SYA_THEPD Alanyl-tRNA synthetase OS=Thermofilum penden...    32   1.3  
sp|Q16643|DREB_HUMAN Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4         32   1.8  
sp|P30414|NKTR_HUMAN NK-tumor recognition protein OS=Homo sapien...    32   2.3  
sp|P55374|Y4BG_RHISN Uncharacterized protein y4bG OS=Rhizobium s...    30   6.7  
sp|Q61817|CREB3_MOUSE Cyclic AMP-responsive element-binding prot...    30   6.7  
sp|O43889|CREB3_HUMAN Cyclic AMP-responsive element-binding prot...    30   8.7  

>sp|A1RWQ1|SYA_THEPD Alanyl-tRNA synthetase OS=Thermofilum pendens
           (strain Hrk 5) GN=alaS PE=3 SV=1
          Length = 907

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 22/83 (26%), Positives = 40/83 (48%)
 Frame = -3

Query: 433 FERERKRIMREGLTNPKPRMEAEEGLQTQDDGMEEMLDAFFQPSEENANEAAREDMRLSP 254
           FE+ +  ++R       P +E  +G+  +   ++E+LDA ++  EE A         L  
Sbjct: 725 FEKIQDGVVRVVFKAGMPALEYVQGMGDKLKNLQEILDASYEGLEEKAKSLKSRIEALEK 784

Query: 253 EDMLRKLVRQPIYGGTKVSVLRT 185
           E  ++KL  + + GG  VS + T
Sbjct: 785 E--VKKLREELLKGGVSVSPVAT 805


>sp|Q16643|DREB_HUMAN Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4
          Length = 649

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = -3

Query: 430 ERERKRIMREGLTNPKPRMEAEEGLQTQDDGMEEMLDAFFQPSEENANEAAREDMRLSPE 251
           E ERK+ + E L   + RME E   Q       E  +  ++  E+   E  R+   L  E
Sbjct: 193 EEERKKALDERLRFEQERMEQERQEQ-------EERERRYREREQQIEEHRRKQQTLEAE 245

Query: 250 DMLRKLVRQPIYG 212
           +  R+L  Q I+G
Sbjct: 246 EAKRRLKEQSIFG 258


>sp|P30414|NKTR_HUMAN NK-tumor recognition protein OS=Homo sapiens
           GN=NKTR PE=1 SV=2
          Length = 1462

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = -1

Query: 435 HLREREKGLCVKV*PIQSQGWKQRRAYRHKTTAWKRCWMPSSSQARRTLTKQHEKTC 265
           H ++R K   VK    + +G KQ+   RHK T  +R  +PS  ++ ++ T++ + +C
Sbjct: 426 HHKKRRKEKKVKH---KKKGKKQKHCRRHKQTKKRRILIPSDIESSKSSTRRMKSSC 479


>sp|P55374|Y4BG_RHISN Uncharacterized protein y4bG OS=Rhizobium sp.
           (strain NGR234) GN=y4bG PE=4 SV=1
          Length = 271

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 394 TNPKPRMEAEEGLQTQDDGMEEMLDAFFQPSEENANEAAREDMRLSPEDMLR 239
           TN  P    E+   T  DGM+E+  A F P +++  +A RE     P D L+
Sbjct: 122 TNNIPGQGREQWAWTPADGMKELGVAAFVPDDKSGWQALRERSFEHPSDALK 173


>sp|Q61817|CREB3_MOUSE Cyclic AMP-responsive element-binding protein
           3 OS=Mus musculus GN=Creb3 PE=2 SV=2
          Length = 404

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = -3

Query: 445 ITPTFERERKRIMREGLTNPKPRMEAEEGLQTQDDGMEEMLDAFFQPSEENANEAAR-ED 269
           +T   E+  KR+ R+ + N +   E+ +  +    G+E  +  +   + E  N+  R E+
Sbjct: 178 LTKVEEQVLKRVRRK-IRNKRAAQESRKKKKVYVVGLESRVLKYTAQNRELQNKVQRLEE 236

Query: 268 MRLSPEDMLRKLVRQPIYGGTKVSVLRTCLSFL 170
             LS  D LRKL    I    K S   TC+  L
Sbjct: 237 QNLSLLDQLRKLQAMVIEIANKTSSGSTCVLVL 269


>sp|O43889|CREB3_HUMAN Cyclic AMP-responsive element-binding protein
           3 OS=Homo sapiens GN=CREB3 PE=1 SV=1
          Length = 395

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = -3

Query: 445 ITPTFERERKRIMREGLTNPKPRMEAEEGLQTQDDGMEEMLDAFFQPSEENANEAAR-ED 269
           +T T E+  KR+ R+ + N +   E+    +    G+E  +  +   + E  N+    E+
Sbjct: 167 LTKTEEQILKRVRRK-IRNKRSAQESRRKKKVYVGGLESRVLKYTAQNMELQNKVQLLEE 225

Query: 268 MRLSPEDMLRKLVRQPIYGGTKVSVLRTCLSFL 170
             LS  D LRKL    I    K S   TC+  L
Sbjct: 226 QNLSLLDQLRKLQAMVIEISNKTSSSSTCILVL 258
tr_hit_id Q8S6M8
Definition tr|Q8S6M8|Q8S6M8_ORYSJ Putative TNP2-like transposon protein OS=Oryza sativa subsp. japonica
Align length 95
Score (bit) 39.7
E-value 0.089
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916062|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F04.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8S6M8|Q8S6M8_ORYSJ Putative TNP2-like transposon protein OS=...    40   0.089
tr|Q7G3C6|Q7G3C6_ORYSJ Transposon protein, putative, CACTA, En/S...    40   0.089
tr|Q7XVA5|Q7XVA5_ORYSJ OSJNBa0081G05.10 protein OS=Oryza sativa ...    39   0.20 
tr|Q01KQ7|Q01KQ7_ORYSA OSIGBa0110B10.1 protein OS=Oryza sativa G...    39   0.20 
tr|Q0E0Q2|Q0E0Q2_ORYSJ Os02g0530800 protein OS=Oryza sativa subs...    38   0.26 
tr|A5AF19|A5AF19_VITVI Putative uncharacterized protein OS=Vitis...    38   0.34 
tr|A5BX99|A5BX99_VITVI Putative uncharacterized protein OS=Vitis...    37   0.75 
tr|A5BSS4|A5BSS4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.75 
tr|Q2RB37|Q2RB37_ORYSJ Transposon protein, putative, CACTA, En/S...    36   0.98 
tr|Q92NP4|Q92NP4_RHIME Probable DNA helicase II OS=Rhizobium mel...    35   1.7  
tr|Q2QVF3|Q2QVF3_ORYSJ Transposon protein, putative, CACTA, En/S...    35   1.7  
tr|A5B1X5|A5B1X5_VITVI Putative uncharacterized protein OS=Vitis...    35   2.2  
tr|A5BU47|A5BU47_VITVI Putative uncharacterized protein OS=Vitis...    34   3.7  
tr|B6NN55|B6NN55_BRAFL Putative uncharacterized protein OS=Branc...    34   3.7  
tr|B6M3W7|B6M3W7_BRAFL Putative uncharacterized protein OS=Branc...    34   3.7  
tr|A8SXT5|A8SXT5_9FIRM Putative uncharacterized protein OS=Copro...    34   4.9  
tr|B3P1P9|B3P1P9_DROER GG17485 OS=Drosophila erecta GN=GG17485 P...    34   4.9  
tr|Q5DPX9|Q5DPX9_9POAL GrpE1 OS=Saccharum hybrid cultivar PE=2 SV=1    33   6.4  
tr|A5BQA4|A5BQA4_VITVI Putative uncharacterized protein OS=Vitis...    33   6.4  
tr|A5BMG6|A5BMG6_VITVI Putative uncharacterized protein (Fragmen...    33   6.4  
tr|A5AP21|A5AP21_VITVI Putative uncharacterized protein OS=Vitis...    33   6.4  
tr|B4LEZ0|B4LEZ0_DROVI GJ13096 OS=Drosophila virilis GN=GJ13096 ...    33   6.4  
tr|A5C859|A5C859_VITVI Putative uncharacterized protein OS=Vitis...    33   8.3  
tr|B6KKY5|B6KKY5_TOXGO Putative uncharacterized protein OS=Toxop...    33   8.3  
tr|B0WCB3|B0WCB3_CULQU RNA polymerase II subunit A C-terminal do...    33   8.3  

>tr|Q8S6M8|Q8S6M8_ORYSJ Putative TNP2-like transposon protein
           OS=Oryza sativa subsp. japonica GN=OSJNBa0073L01.21 PE=4
           SV=1
          Length = 1571

 Score = 39.7 bits (91), Expect = 0.089
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
 Frame = -3

Query: 343 DGMEEML-DAFFQPSEENANEAAREDMRLSPED----------MLRKLVRQPIYGGTKVS 197
           +GM++++ D F Q +    +EA  E     PE+           L     QP+Y G+++S
Sbjct: 104 NGMQDLMEDLFPQCNTPGGDEATHESTDQGPEEEPNTDAAKFYALLDKYNQPLYEGSRIS 163

Query: 196 VLRTCLSFLNLQSMYGWSDASVTTLFRYLTYKRDF 92
            L   ++ L+++++  WS+ S T L   L  ++DF
Sbjct: 164 KLSALVNLLHVKNLGKWSNKSFTALLELL--RKDF 196


>tr|Q7G3C6|Q7G3C6_ORYSJ Transposon protein, putative, CACTA, En/Spm
           sub-class OS=Oryza sativa subsp. japonica
           GN=LOC_Os10g21980 PE=4 SV=1
          Length = 1647

 Score = 39.7 bits (91), Expect = 0.089
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
 Frame = -3

Query: 343 DGMEEML-DAFFQPSEENANEAAREDMRLSPED----------MLRKLVRQPIYGGTKVS 197
           +GM++++ D F Q +    +EA  E     PE+           L     QP+Y G+++S
Sbjct: 104 NGMQDLMEDLFPQCNTPGGDEATHESTDQGPEEEPNTDAAKFYALLDKYNQPLYEGSRIS 163

Query: 196 VLRTCLSFLNLQSMYGWSDASVTTLFRYLTYKRDF 92
            L   ++ L+++++  WS+ S T L   L  ++DF
Sbjct: 164 KLSALVNLLHVKNLGKWSNKSFTALLELL--RKDF 196


>tr|Q7XVA5|Q7XVA5_ORYSJ OSJNBa0081G05.10 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0081G05.10 PE=4 SV=2
          Length = 1490

 Score = 38.5 bits (88), Expect = 0.20
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
 Frame = -3

Query: 343 DGMEEML-DAFFQPSEENANEAAREDMRLSPED----------MLRKLVRQPIYGGTKVS 197
           +GM++++ D F Q +    +EA  E     PE+           L     QP+Y G++ S
Sbjct: 104 NGMQDLMEDLFPQCNTPGGDEATHESTDQGPEEEPNTDAAKFYALLDKYNQPLYEGSRTS 163

Query: 196 VLRTCLSFLNLQSMYGWSDASVTTLFRYLTYKRDF 92
            L   ++ L+++++  WS+ S T L   L  ++DF
Sbjct: 164 KLSALVNLLHVKNLGKWSNKSFTALLELL--RKDF 196


>tr|Q01KQ7|Q01KQ7_ORYSA OSIGBa0110B10.1 protein OS=Oryza sativa
           GN=OSIGBa0110B10.1 PE=4 SV=1
          Length = 1490

 Score = 38.5 bits (88), Expect = 0.20
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
 Frame = -3

Query: 343 DGMEEML-DAFFQPSEENANEAAREDMRLSPED----------MLRKLVRQPIYGGTKVS 197
           +GM++++ D F Q +    +EA  E     PE+           L     QP+Y G++ S
Sbjct: 104 NGMQDLMEDLFPQCNTPGGDEATHESTDQGPEEEPNTDAAKFYALLDKYNQPLYEGSRTS 163

Query: 196 VLRTCLSFLNLQSMYGWSDASVTTLFRYLTYKRDF 92
            L   ++ L+++++  WS+ S T L   L  ++DF
Sbjct: 164 KLSALVNLLHVKNLGKWSNKSFTALLELL--RKDF 196


>tr|Q0E0Q2|Q0E0Q2_ORYSJ Os02g0530800 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0530800 PE=4 SV=1
          Length = 2710

 Score = 38.1 bits (87), Expect = 0.26
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
 Frame = -3

Query: 343 DGMEEMLDAFF-QPSEENANEAAREDMRLSPED----------MLRKLVRQPIYGGTKVS 197
           +GM+++++  F Q +    +EA  E     PE+           L     QP+Y G++ S
Sbjct: 104 NGMQDLMENLFPQCNTPGGDEATHESTDQGPEEEPNTDAAKFYALLDKYNQPLYEGSRTS 163

Query: 196 VLRTCLSFLNLQSMYGWSDASVTTLFRYLTYKRDF 92
            L   ++ L+++++  WS+ S T L   L  ++DF
Sbjct: 164 KLSALVNLLHVKNLGKWSNKSFTALLELL--RKDF 196


>tr|A5AF19|A5AF19_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_021309 PE=4 SV=1
          Length = 383

 Score = 37.7 bits (86), Expect = 0.34
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
 Frame = -3

Query: 286 EAAREDMRLSPEDMLRKL--VRQPIY----GGTKVSVLRTCLSFLNLQSMYGWSDASVTT 125
           EAA++D +++PE   R L    +P+Y      TK+SVL   +   NL++ YGW D S   
Sbjct: 3   EAAQDDYKVNPELFERLLEDAEKPLYPNCKNXTKLSVL---VKLYNLKAKYGWCDKSFFE 59

Query: 124 LFR----YLTYKRDFPIA 83
           L R     L    +FP++
Sbjct: 60  LLRLLGDMLPLNNEFPLS 77


>tr|A5BX99|A5BX99_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038839 PE=4 SV=1
          Length = 1388

 Score = 36.6 bits (83), Expect = 0.75
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
 Frame = -3

Query: 286 EAAREDMRLSPE--DMLRKLVRQPIYGG----TKVSVLRTCLSFLNLQSMYGWSDASVTT 125
           +AA +D +  PE    L +  ++P+Y G    TK+S L T     NL++ YGWSD S   
Sbjct: 3   QAAHDDCKNDPELFQTLLEDAQKPLYPGCRNFTKLSALVT---LYNLKARYGWSDKSFLE 59

Query: 124 LFRYL 110
           L R L
Sbjct: 60  LLRIL 64


>tr|A5BSS4|A5BSS4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030496 PE=4 SV=1
          Length = 1464

 Score = 36.6 bits (83), Expect = 0.75
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 286 EAAREDMRLSPEDMLRKL--VRQPIYGGTK-VSVLRTCLSFLNLQSMYGWSDASVTTLFR 116
           EAA++D + +P+   R L    +P+Y G K  + L   +   NL+  YGWSD S + L  
Sbjct: 3   EAAQDDCKANPKLFERLLEDAEKPLYPGCKNFTKLSALVKLYNLKGRYGWSDKSFSELLS 62

Query: 115 YL 110
            L
Sbjct: 63  LL 64


>tr|Q2RB37|Q2RB37_ORYSJ Transposon protein, putative, CACTA, En/Spm
           sub-class OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g03330 PE=4 SV=1
          Length = 823

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
 Frame = -3

Query: 400 GLTNPKPRMEAEEGLQTQDDGMEEMLDAFFQPSEENANEAAREDMRLSPED--------- 248
           GL + +   E  EG++   D     LD   Q +    +EA  E     PE+         
Sbjct: 9   GLVDDRLNHEYLEGVEKFIDYAFSKLDGV-QCNTPGGDEATHESTDQGPEEEPNTDAAKF 67

Query: 247 -MLRKLVRQPIYGGTKVSVLRTCLSFLNLQSMYGWSDASVTTLFRYLTYKRDF 92
             L     QP+Y G++ S L   ++ L+++++  WS+ S T L   L  ++DF
Sbjct: 68  YALLDKYNQPLYEGSRTSKLSALVNLLHVKNLGKWSNKSFTALLELL--RKDF 118


>tr|Q92NP4|Q92NP4_RHIME Probable DNA helicase II OS=Rhizobium
           meliloti GN=uvrD1 PE=4 SV=1
          Length = 857

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 29/88 (32%), Positives = 42/88 (47%)
 Frame = -3

Query: 325 LDAFFQPSEENANEAAREDMRLSPEDMLRKLVRQPIYGGTKVSVLRTCLSFLNLQSMYGW 146
           L A F PS+    +AAR    LSP +      R    G  + +V   C+   + QS+YGW
Sbjct: 291 LPATFSPSDGEKGQAARSQSPLSPSE------RGEGRGEGQPTVNICCVGD-DDQSIYGW 343

Query: 145 SDASVTTLFRYLTYKRDFPIATMTCLGR 62
             A V  + R   +++DFP A +  L R
Sbjct: 344 RGAEVDNILR---FEKDFPGAKVIKLER 368