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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916063
Clone id YMU001_000082_F05
Library
Length 473
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACAATCCTTGACCTTGACCATAACCGCAAACACTTGTCAACAAACCACCATCCCACACTT
GTACCCACCGATGCATACACTCATCCCAATATTGTAAACACACTCACACAAGGAGGCGAC
ACACGCCTCGACCACACATATCATTTTCCCGCACAATCTCTCTCCCTCCCTCTTTGCATA
CACACACAGACAAAACCCGGAGCCAACGCTACCACGGGCGTACGGCAAAAGACAAGATGG
ATGAGAAGACTAACATCCAACCATAAAAAAACATGGACAAGCTCTACATCATCACAAAGG
TAGGTTACAATCGTGGTGTCGGTAGTACATAGCTCCCTCTTGCAGATAGCCTTTCTCGGT
TCTTGTCATGAGCTCGACCAAAGCCCCTTCAACTGACGGTTCTGCCCTATTTTGAAGCTC
TTGGCTTCACATGCTCGTCAAGGTCCCGACTGGCCCCTCACTCCTTCCTCATA
■■Homology search results ■■ -
sp_hit_id Q8C120
Definition sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus
Align length 67
Score (bit) 36.2
E-value 0.076
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916063|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F05.
         (473 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein ...    36   0.076
sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1     31   3.2  
sp|Q9IBD1|CELF3_DANRE CUG-BP- and ETR-3-like factor 3 OS=Danio r...    31   3.2  
sp|P35556|FBN2_HUMAN Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=2     30   4.2  
sp|P23515|OMGP_HUMAN Oligodendrocyte-myelin glycoprotein OS=Homo...    29   9.3  
sp|P81221|HMD_METTW 5,10-methenyltetrahydromethanopterin hydroge...    29   9.3  

>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3
           OS=Mus musculus GN=Sh3rf3 PE=2 SV=2
          Length = 878

 Score = 36.2 bits (82), Expect = 0.076
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 46  HHPTLVPTDAYTHPNIVNTLTQGGDTRLDHTYHFPAQSLSLPLC----IHTQTKPGANAT 213
           H  T +PT +    +   T +Q GDT +    H  AQ+L  P      + TQT P    +
Sbjct: 575 HPATSLPTGSCLRHSAQPTASQAGDTTIPTATHASAQALDRPTATVSPLRTQTSPSRLPS 634

Query: 214 TGVRQKT 234
           TG+R ++
Sbjct: 635 TGLRPRS 641


>sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1
          Length = 2907

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
 Frame = -3

Query: 234 CLLPYARGSVGSGFC----LCVYAKREGERLCGK---MICVVE-----ACVASLCECVYN 91
           C++P  R S G GFC    +C  +  +    CG+     C V       C    C+C   
Sbjct: 110 CIVPICRNSCGDGFCSRPNMCTCSSGQISPTCGRKSIQQCSVRCMNGGTCADDHCQC--- 166

Query: 90  IGMSVCIGGYKCGMVVC 40
                 IG Y CG  VC
Sbjct: 167 --QKGYIGTY-CGQPVC 180


>sp|Q9IBD1|CELF3_DANRE CUG-BP- and ETR-3-like factor 3 OS=Danio
           rerio GN=tnrc4 PE=2 SV=2
          Length = 452

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +2

Query: 17  TITANTCQQTTIPHLYPPM--HTLIPIL*THSHKEATHASTTHIIFPHN-----LSPSLF 175
           T T  T   T +P L PP+  ++  P+    + + A+ A  T+ + P+      L P   
Sbjct: 259 TSTPPTIAATPVPALPPPIAVNSYPPVPAAPNGQSASEALYTNGVHPYQAQSPALDPLQQ 318

Query: 176 AYTHRQNPEPTLPRAYG 226
           AYT  Q+   T P AYG
Sbjct: 319 AYTGMQHYTATYPAAYG 335


>sp|P35556|FBN2_HUMAN Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=2
          Length = 2911

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
 Frame = -3

Query: 234 CLLPYARGSVGSGFC----LCVYAKREGERLCGK---MICVVE-----ACVASLCECVYN 91
           C++P  R S G GFC    +C  +  +    CG      C V       C    C+C   
Sbjct: 110 CIVPICRNSCGDGFCSRPNMCTCSSGQISSTCGSKSIQQCSVRCMNGGTCADDHCQC--- 166

Query: 90  IGMSVCIGGYKCGMVVC 40
                 IG Y CG  VC
Sbjct: 167 --QKGYIGTY-CGQPVC 180


>sp|P23515|OMGP_HUMAN Oligodendrocyte-myelin glycoprotein OS=Homo
           sapiens GN=OMG PE=1 SV=2
          Length = 440

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 260 LDVSLLIHLVFCRTPVVALAPGFVCVCMQRGRERDCAGK 144
           L +SL + ++   TP +       C+C +R R  DC+G+
Sbjct: 6   LKMSLCLFILLFLTPGILCICPLQCICTERHRHVDCSGR 44


>sp|P81221|HMD_METTW 5,10-methenyltetrahydromethanopterin
           hydrogenase OS=Methanobacterium thermoautotrophicum
           (strain Winter) GN=hmd PE=3 SV=1
          Length = 344

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
 Frame = +1

Query: 40  TNHHPTLVP--------TDAYTHPNIVNTLTQGGDTRLDHTYHFPAQSLSLPLC 177
           T++HP  VP         +AY     +NTL + G     + Y  PA+ L  P+C
Sbjct: 200 TSYHPGAVPEMKGQVYIAEAYASEEAINTLFELGQKARGNAYKLPAELLG-PVC 252
tr_hit_id A7S870
Definition tr|A7S870|A7S870_NEMVE Predicted protein OS=Nematostella vectensis
Align length 59
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916063|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F05.
         (473 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7S870|A7S870_NEMVE Predicted protein OS=Nematostella vectens...    36   1.1  
tr|Q2GWV7|Q2GWV7_CHAGB Putative uncharacterized protein OS=Chaet...    35   2.4  
tr|Q5AWX4|Q5AWX4_EMENI Putative uncharacterized protein OS=Emeri...    34   3.2  
tr|A8QHU8|A8QHU8_BRUMA Myotubularin-related family protein OS=Br...    34   4.2  
tr|B7Z1T2|B7Z1T2_HUMAN cDNA FLJ52618 OS=Homo sapiens PE=2 SV=1         34   4.2  
tr|A2RB79|A2RB79_ASPNC Contig An18c0170, complete genome OS=Aspe...    33   9.3  

>tr|A7S870|A7S870_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g208296 PE=4 SV=1
          Length = 216

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = +2

Query: 59  LYPPMHTLIPIL*THSHKEATHASTTHIIFPHNLSPS----LFAYTHRQNPE---PTLP 214
           ++P +HT  P + T +H E THA  TH   P   +P+      AYTH+ +P    P++P
Sbjct: 125 IHPRLHT--PSIHTPTHAEYTHAEYTHAYTPSTPTPTHAEYTHAYTHQVHPRLHTPSIP 181


>tr|Q2GWV7|Q2GWV7_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_07547 PE=4 SV=1
          Length = 480

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +1

Query: 37  STNH---HPTLVPTDAYTHPNIVNTLTQGGDTRLDHTYHFPAQSLSLPLCIHTQTKPGAN 207
           +TNH   H T+  T A+THP++  TL         +TY    QS   P C  T T     
Sbjct: 19  TTNHNHDHSTICQTLAHTHPHLTITLPSSPLYPTHNTYWSARQSALHPACFITPTN---- 74

Query: 208 ATTGVRQKTRWM 243
            TT V Q  R++
Sbjct: 75  -TTEVAQTIRFL 85


>tr|Q5AWX4|Q5AWX4_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN7206.2 PE=4 SV=1
          Length = 268

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 31  HLSTNHHPTLVPTDAYTHPNIVNTLTQGG---DTRLDHTYHFPAQ 156
           H+S    PT+VPT A   P + +T    G   D+R  + YH P Q
Sbjct: 50  HMSETETPTIVPTAASEEPTLPSTSYHNGYSSDSRAHYEYHTPTQ 94


>tr|A8QHU8|A8QHU8_BRUMA Myotubularin-related family protein
           OS=Brugia malayi GN=Bm1_57620 PE=4 SV=1
          Length = 670

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = -2

Query: 97  LQYWDECMHRWVQ---VWDGGLLT 35
           +Q+WDEC  RWVQ   + DGG+LT
Sbjct: 556 VQFWDECYLRWVQPANIADGGILT 579


>tr|B7Z1T2|B7Z1T2_HUMAN cDNA FLJ52618 OS=Homo sapiens PE=2 SV=1
          Length = 312

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
 Frame = +2

Query: 11  TLTITANTCQQTTIPHLYPPMHTLI-----PIL*THSHKEA---THASTTHIIFPHNLSP 166
           T + T  T   +  PH +PP+H  I     P++   +H      TH S+TH     ++ P
Sbjct: 132 THSSTHPTVHSSIHPHTHPPVHLPIHPSTHPLICPSTHPSVYLPTHLSSTHPFIHPSIHP 191

Query: 167 SLFAYTHRQNPEPTLP 214
            ++  TH     P  P
Sbjct: 192 LIYISTHLSTHSPIHP 207


>tr|A2RB79|A2RB79_ASPNC Contig An18c0170, complete genome
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An18g05800 PE=4 SV=1
          Length = 827

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 346 IAFLGSCHELDQSPFN*RFCPILKLLASHARQGPDWPLTPS 468
           +A LG+ HE+ + P N    P+ +L  S   Q PDWP  P+
Sbjct: 352 VAELGTNHEIYELPSN--EAPVFELPGSPVPQSPDWPTQPA 390