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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916068
Clone id YMU001_000082_F10
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGATGTGGCTCCGCACACGATGTTCAAATTGCCAGCTGAATGTCGGAATCATCCTTCTC
AGTATCGCCACAAGGTTGCACATACCTTACTATTCATTAACAGCATTCATGAATGCCCTT
ACATCCATGGACATAACACTCTCCCCACTGCTGACAGAGCAAGTAGAGCTTGTCCTTAGT
AAACCCTTCGCATGCCCTGTGAGATTCAAATACGAGTCCTTGATTCCAACACTCTCAATG
CAACCTTCAGCTGCTGACAAGCTGTTCTCACCATATAAAAACTGAGGCCGATGACCAACA
CCTTCCTCATTCGCATGTTCAAATCGCTCAACCCTGTTTGTGTTGAGGTCAACTGAAGCT
GATCCAAAAGATTGTTCCATGAGCTAGGAAGCACGGCTCTTCCACCAGCGTAACTCCTCC
TCCTTGGCATGTAATTTACTCAGTGCCAACTCCAGTGCCCCCTCCAATTCAGAGATCCTC
TCCTCTTGCCTTTCTTGGAATACTTGCCAAAGTTTCCTCTCTAGCTCCAGCATTGACAT
■■Homology search results ■■ -
sp_hit_id Q9JIY2
Definition sp|Q9JIY2|HAKAI_MOUSE E3 ubiquitin-protein ligase Hakai OS=Mus musculus
Align length 104
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916068|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F10.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JIY2|HAKAI_MOUSE E3 ubiquitin-protein ligase Hakai OS=Mus m...    32   2.6  
sp|Q4R7I8|HAKAI_MACFA E3 ubiquitin-protein ligase Hakai OS=Macac...    32   2.6  
sp|Q75N03|HAKAI_HUMAN E3 ubiquitin-protein ligase Hakai OS=Homo ...    32   2.6  
sp|P39916|TRXB_COXBU Thioredoxin reductase OS=Coxiella burnetii ...    31   3.4  
sp|O07553|NHAC_BACSU Na(+)/H(+) antiporter nhaC OS=Bacillus subt...    30   5.7  
sp|Q96725|POLG_EBHSG Genome polyprotein OS=European brown hare s...    30   7.5  
sp|Q5ZHZ4|HAKAI_CHICK E3 ubiquitin-protein ligase Hakai OS=Gallu...    30   7.5  
sp|P42763|ERD14_ARATH Dehydrin ERD14 OS=Arabidopsis thaliana GN=...    30   7.5  
sp|Q24120|CAPU_DROME Protein cappuccino OS=Drosophila melanogast...    30   7.5  
sp|Q93Z24|BGL17_ARATH Beta-galactosidase 17 OS=Arabidopsis thali...    30   7.5  
sp|Q8A1G8|ACKA_BACTN Acetate kinase OS=Bacteroides thetaiotaomic...    30   7.5  
sp|Q95K52|ZN283_MACFA Zinc finger protein 283 OS=Macaca fascicul...    30   9.8  
sp|Q2H0S0|IML1_CHAGB Vacuolar membrane-associated protein IML1 O...    30   9.8  
sp|Q8JMZ7|DPOL_HBVH3 Protein P OS=Hepatitis B virus genotype H s...    30   9.8  
sp|Q8JN08|DPOL_HBVH2 Protein P OS=Hepatitis B virus genotype H s...    30   9.8  
sp|Q8JMY7|DPOL_HBVH1 Protein P OS=Hepatitis B virus genotype H (...    30   9.8  
sp|Q69605|DPOL_HBVF6 Protein P OS=Hepatitis B virus genotype F2 ...    30   9.8  

>sp|Q9JIY2|HAKAI_MOUSE E3 ubiquitin-protein ligase Hakai OS=Mus
           musculus GN=Cbll1 PE=1 SV=1
          Length = 491

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
 Frame = +2

Query: 215 SP*FQHSQCNLQLLTSCSHHIKTEADDQHL--------PHSHVQIAQPCLC*GQLKLIQK 370
           +P   H +   Q + S  HHI      QH         P SH  +  P    G   L+  
Sbjct: 314 APAHHHPEYQGQPVVSHPHHIMPP--QQHYAPPPPPPPPISH-PMPHPPQAAGTPHLVYS 370

Query: 371 IVP*ARKHGSSTSVTPPPWHVIYSV------PTPVPPPIQRSSP 484
             P      +   +TPPP H+I  +      P P PPP Q   P
Sbjct: 371 QAPPPPMTSAPPPITPPPGHIIAQMPPYMNHPPPGPPPPQHGGP 414


>sp|Q4R7I8|HAKAI_MACFA E3 ubiquitin-protein ligase Hakai OS=Macaca
           fascicularis GN=CBLL1 PE=2 SV=1
          Length = 490

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
 Frame = +2

Query: 215 SP*FQHSQCNLQLLTSCSHHIKTEADDQHL--------PHSHVQIAQPCLC*GQLKLIQK 370
           +P   H +   Q + S  HHI      QH         P SH  +  P    G   L+  
Sbjct: 313 APAHHHPEYQGQPVVSHPHHIMPP--QQHYAPPPPPPPPISH-PMPHPPQAAGTPHLVYS 369

Query: 371 IVP*ARKHGSSTSVTPPPWHVIYSV------PTPVPPPIQRSSP 484
             P      +   +TPPP H+I  +      P P PPP Q   P
Sbjct: 370 QAPPPPMTSAPPPITPPPGHIIAQMPPYMNHPPPGPPPPQHGGP 413


>sp|Q75N03|HAKAI_HUMAN E3 ubiquitin-protein ligase Hakai OS=Homo
           sapiens GN=CBLL1 PE=1 SV=1
          Length = 491

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
 Frame = +2

Query: 215 SP*FQHSQCNLQLLTSCSHHIKTEADDQHL--------PHSHVQIAQPCLC*GQLKLIQK 370
           +P   H +   Q + S  HHI      QH         P SH  +  P    G   L+  
Sbjct: 314 APAHHHPEYQGQPVVSHPHHIMPP--QQHYAPPPPPPPPISH-PMPHPPQAAGTPHLVYS 370

Query: 371 IVP*ARKHGSSTSVTPPPWHVIYSV------PTPVPPPIQRSSP 484
             P      +   +TPPP H+I  +      P P PPP Q   P
Sbjct: 371 QAPPPPMTSAPPPITPPPGHIIAQMPPYMNHPPPGPPPPQHGGP 414


>sp|P39916|TRXB_COXBU Thioredoxin reductase OS=Coxiella burnetii
           GN=trxB PE=3 SV=2
          Length = 320

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 323 FEHANEEGVGHRPQFLYGENSLSAAEGCIESVGIKDSYLNL 201
           F+H NE  +  RP  L G+N+  + +  I + G    YL L
Sbjct: 82  FDHINEADLNQRPFLLKGDNATYSCDALIIATGASARYLGL 122


>sp|O07553|NHAC_BACSU Na(+)/H(+) antiporter nhaC OS=Bacillus
           subtilis GN=nhaC PE=1 SV=1
          Length = 453

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 37  LNVGIILLSIATRLHIPYYSLTAFMNAL 120
           L  GII   I T + +PY SL AFM AL
Sbjct: 261 LTAGIISSGILTAIFVPYSSLQAFMTAL 288


>sp|Q96725|POLG_EBHSG Genome polyprotein OS=European brown hare
            syndrome virus (strain GD) GN=ORF1 PE=3 SV=1
          Length = 2334

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 398  SSTSVTPPPWHVIYSVPTPVPPPIQRSSPLAFLGILAKVSSL 523
            ++T+ TP P  ++ +  TPV  PI +++P+ F  ++ +   +
Sbjct: 2186 AATTYTPQPSAIVTTPGTPVAAPIGKNTPIMFSAVVRRTGDV 2227


>sp|Q5ZHZ4|HAKAI_CHICK E3 ubiquitin-protein ligase Hakai OS=Gallus
           gallus GN=CBLL1 PE=2 SV=1
          Length = 493

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
 Frame = +2

Query: 215 SP*FQHSQCNLQLLTSCSHHIKTEADDQHL--------PHSHVQIAQPCLC*GQLKLIQK 370
           +P   H +   Q + +  HHI      QH         P SH  +  P    G   ++  
Sbjct: 314 APAHHHPEYQGQPVVTHPHHIMPP--QQHYAPPPPPPPPISH-PLQHPPQAAGTPHMVYS 370

Query: 371 IVP*ARKHGSSTSVTPPPWHVIYSV------PTPVPPPIQRSSP 484
             P      +   +TPPP H+I  +      P P PPP Q   P
Sbjct: 371 QAPPPPMTSAPPPITPPPGHIIAQMPPYMNHPPPGPPPPQHGGP 414


>sp|P42763|ERD14_ARATH Dehydrin ERD14 OS=Arabidopsis thaliana
           GN=ERD14 PE=1 SV=1
          Length = 185

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 416 PPPWHVIYSVPTPVPPPIQRSSPLAFLGILAKVSSLAP 529
           P     + + P  VPPP++ + P+   GIL K+    P
Sbjct: 132 PEDGSAVAAAPVVVPPPVEEAHPVEKKGILEKIKEKLP 169


>sp|Q24120|CAPU_DROME Protein cappuccino OS=Drosophila melanogaster
           GN=capu PE=2 SV=2
          Length = 1059

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 416 PPPWHVIYSVPTPVPPPIQRSSPLAFLG 499
           PPP H   + P P PPP     PLA  G
Sbjct: 491 PPPLHAFVAPPPPPPPPPPPPPPLANYG 518


>sp|Q93Z24|BGL17_ARATH Beta-galactosidase 17 OS=Arabidopsis thaliana
           GN=BGAL17 PE=2 SV=1
          Length = 697

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -1

Query: 338 NRVERFEHANEEGVGHRPQFLYGENSLSAAEGCIESVGIKDSYLNLTGHAKGL 180
           NR ++FE  N+ G    P    GE S+++ E       IKD+YL+  G  KG+
Sbjct: 583 NRSKKFELTNDVG-RKEPALFAGEFSINSEEE------IKDTYLSFNGWGKGV 628
tr_hit_id Q0DE18
Definition tr|Q0DE18|Q0DE18_ORYSJ Os06g0184200 protein OS=Oryza sativa subsp. japonica
Align length 70
Score (bit) 41.2
E-value 0.035
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916068|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F10.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0DE18|Q0DE18_ORYSJ Os06g0184200 protein OS=Oryza sativa subs...    41   0.035
tr|Q5SMN8|Q5SMN8_ORYSJ Putative uncharacterized protein P0554A06...    40   0.10 
tr|B8B3I8|B8B3I8_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.10 
tr|A3B918|A3B918_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.10 
tr|Q9LEV1|Q9LEV1_ARATH Putative uncharacterized protein T30N20_1...    38   0.30 
tr|Q6K8Z2|Q6K8Z2_ORYSJ Os02g0795200 protein OS=Oryza sativa subs...    35   1.9  
tr|A2XAJ0|A2XAJ0_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|Q7X606|Q7X606_ORYSJ OSJNBa0080E14.2 protein OS=Oryza sativa s...    34   5.6  
tr|Q7FAZ8|Q7FAZ8_ORYSA OSJNBa0089E12.19 protein OS=Oryza sativa ...    34   5.6  
tr|A9SSC4|A9SSC4_PHYPA Predicted protein OS=Physcomitrella paten...    34   5.6  
tr|A5C054|A5C054_VITVI Putative uncharacterized protein OS=Vitis...    34   5.6  
tr|Q5I6D5|Q5I6D5_TRYCR DNA topoisomerase OS=Trypanosoma cruzi PE...    34   5.6  
tr|Q4DSM2|Q4DSM2_TRYCR Rac serine-threonine kinase, putative OS=...    34   5.6  
tr|Q4DNR5|Q4DNR5_TRYCR DNA topoisomerase OS=Trypanosoma cruzi GN...    34   5.6  
tr|Q4DL90|Q4DL90_TRYCR Rac serine-threonine kinase, putative OS=...    34   5.6  
tr|Q4DJB7|Q4DJB7_TRYCR DNA topoisomerase OS=Trypanosoma cruzi GN...    34   5.6  
tr|Q23PQ2|Q23PQ2_TETTH Mitochondrial carrier protein OS=Tetrahym...    33   7.3  
tr|Q2H3C0|Q2H3C0_CHAGB Putative uncharacterized protein OS=Chaet...    33   9.5  

>tr|Q0DE18|Q0DE18_ORYSJ Os06g0184200 protein OS=Oryza sativa subsp.
           japonica GN=Os06g0184200 PE=4 SV=1
          Length = 476

 Score = 41.2 bits (95), Expect = 0.035
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = -1

Query: 539 MSMLELERKLWQVFQERQEERIXXXXXXXXXXXXXLHAKEEELRWWKSRAS*LMEQSFGS 360
           +S   LER+L+++ Q+RQ+ERI             LH KE E+ WW+  A  +  +   S
Sbjct: 365 VSARALERRLYELLQKRQQERIVELEAALDATQRRLHEKEREVVWWRDAAKLVTHRRDES 424

Query: 359 ASVDLNTNRV 330
                +T+RV
Sbjct: 425 RRFARSTSRV 434


>tr|Q5SMN8|Q5SMN8_ORYSJ Putative uncharacterized protein P0554A06.12
           OS=Oryza sativa subsp. japonica GN=P0554A06.12 PE=4 SV=1
          Length = 417

 Score = 39.7 bits (91), Expect = 0.10
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 539 MSMLELERKLWQVFQERQEERIXXXXXXXXXXXXXLHAKEEELRWWKSRA 390
           +S   LER+L+++ Q+RQ+ERI             LH KE E+ WW+  A
Sbjct: 352 VSARALERRLYELLQKRQQERIVELEAALDATQRRLHEKEREVVWWRDAA 401


>tr|B8B3I8|B8B3I8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21933 PE=4 SV=1
          Length = 290

 Score = 39.7 bits (91), Expect = 0.10
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 539 MSMLELERKLWQVFQERQEERIXXXXXXXXXXXXXLHAKEEELRWWKSRA 390
           +S   LER+L+++ Q+RQ+ERI             LH KE E+ WW+  A
Sbjct: 225 VSARALERRLYELLQKRQQERIVELEAALDATQRRLHEKEREVVWWRDAA 274


>tr|A3B918|A3B918_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019540 PE=4 SV=1
          Length = 702

 Score = 39.7 bits (91), Expect = 0.10
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 539 MSMLELERKLWQVFQERQEERIXXXXXXXXXXXXXLHAKEEELRWWKSRA 390
           +S   LER+L+++ Q+RQ+ERI             LH KE E+ WW+  A
Sbjct: 352 VSARALERRLYELLQKRQQERIVELEAALDATQRRLHEKEREVVWWRDAA 401


>tr|Q9LEV1|Q9LEV1_ARATH Putative uncharacterized protein T30N20_160
           OS=Arabidopsis thaliana GN=T30N20_160 PE=4 SV=1
          Length = 295

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 527 ELERKLWQVFQERQEERIXXXXXXXXXXXXXLHAKEEELRWWKSRA 390
           ELER+L+++ + RQ+E I             LH KE E  WWK  A
Sbjct: 224 ELERRLYELMETRQQEEIKELEIALDDAKQRLHLKETEASWWKDTA 269


>tr|Q6K8Z2|Q6K8Z2_ORYSJ Os02g0795200 protein OS=Oryza sativa subsp.
           japonica GN=OJ1695_H09.10 PE=2 SV=1
          Length = 348

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 539 MSMLELERKLWQVFQERQEERIXXXXXXXXXXXXXLHAKEEELRWWKSRA 390
           +S  ELER+L ++ Q R EERI             L  KE E+ WW++ A
Sbjct: 286 VSARELERRLHELLQWRHEERIAELETALERARKRLQEKEREVCWWRNTA 335


>tr|A2XAJ0|A2XAJ0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09272 PE=4 SV=1
          Length = 345

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 539 MSMLELERKLWQVFQERQEERIXXXXXXXXXXXXXLHAKEEELRWWKSRA 390
           +S  ELER+L ++ Q R EERI             L  KE E+ WW++ A
Sbjct: 283 VSARELERRLHELLQWRHEERIAELETALERARKRLQEKEREVCWWRNTA 332


>tr|Q7X606|Q7X606_ORYSJ OSJNBa0080E14.2 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0080E14.2 PE=4 SV=2
          Length = 1176

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 368 KIVP*ARKHGSSTSVTPPPWHVIYSVPTPVPPPIQR 475
           + +P   +H ++T  TPP  H   +V TP PPP +R
Sbjct: 15  RAMPPPARHAAATVATPPQRHAAAAVATPPPPPPRR 50


>tr|Q7FAZ8|Q7FAZ8_ORYSA OSJNBa0089E12.19 protein OS=Oryza sativa
           GN=OSJNBa0089E12.19 PE=4 SV=1
          Length = 1378

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 368 KIVP*ARKHGSSTSVTPPPWHVIYSVPTPVPPPIQR 475
           + +P   +H ++T  TPP  H   +V TP PPP +R
Sbjct: 15  RAMPPPARHAAATVATPPQRHAAAAVATPPPPPPRR 50


>tr|A9SSC4|A9SSC4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233998 PE=4 SV=1
          Length = 1520

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = -1

Query: 539 MSMLELERKLWQVFQERQEERIXXXXXXXXXXXXXLHAKEEELRWWKSRAS*LMEQSFGS 360
           +S  EL R L ++ + RQEE I             L  +E+EL  WK R     E SFGS
Sbjct: 799 VSPRELTRLLRKLQRARQEELITELEGELEATQSKLQNREKELEMWKDRVRRFTEVSFGS 858

Query: 359 AS 354
            S
Sbjct: 859 GS 860