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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916069
Clone id YMU001_000082_F11
Library
Length 446
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCATCTCTGTAGTATCATACAAAAGCCTTGGTTATTCAAGGCTGCTCGCATTTAACACC
AATGCTTTAAGCATCGAGAGTGGTGAAGCCTTGTATAAACAACCATGGCCTGATATCAAG
CACATAATTAGAATTGATTTACCACTCTGCTATTCCTTGGAAGGATCATGAAACCTCGGG
TGATCTGCAGGCTTGGATGATCAGGCCTCTCCAAATCGAGAAGAATTTAACATTGTGGGT
TCCATGATCCTCCATTAGTCACCTGACCATAAACAGGAGATACCCCACCATTTGAACAGA
GACCAATTGGCTACACTCACATTGAGGTGCAAAAGGAAGTCCAGAAAATTCTCAAGAAAA
CCATTAAAGAGGCTGGTCCAATCCTTGTCTATTTTCCAAGCAAGCGAAACTCCATCATCC
CTTCATTGCGCATGGGAGAGTACCAT
■■Homology search results ■■ -
sp_hit_id Q9DCC7
Definition sp|Q9DCC7|ISC2B_MOUSE Isochorismatase domain-containing protein 2B, mitochondrial OS=Mus musculus
Align length 33
Score (bit) 33.9
E-value 0.32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916069|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F11.
         (446 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DCC7|ISC2B_MOUSE Isochorismatase domain-containing protein ...    34   0.32 
sp|Q7Z2Y5|NRK_HUMAN Nik-related protein kinase OS=Homo sapiens G...    32   1.6  
sp|Q9YEM5|KSGA_AERPE Probable dimethyladenosine transferase OS=A...    30   4.6  
sp|Q5U3Z3|ISOC2_RAT Isochorismatase domain-containing protein 2,...    30   4.6  
sp|Q5YCC5|TMC7_CHICK Transmembrane channel-like protein 7 OS=Gal...    29   7.8  
sp|P68438|RAP94_VACCW RNA polymerase-associated transcription-sp...    29   7.8  
sp|P68439|RAP94_VACCC RNA polymerase-associated transcription-sp...    29   7.8  
sp|O57207|RAP94_VACCA RNA polymerase-associated transcription-sp...    29   7.8  
sp|Q80T62|GP101_MOUSE Probable G-protein coupled receptor 101 OS...    29   7.8  

>sp|Q9DCC7|ISC2B_MOUSE Isochorismatase domain-containing protein 2B,
           mitochondrial OS=Mus musculus GN=Isoc2b PE=1 SV=1
          Length = 210

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 15/33 (45%), Positives = 25/33 (75%)
 Frame = +3

Query: 333 KEVQKILKKTIKEAGPILVYFPSKRNSIIPSLR 431
           KE+QKILK+ + + G +L +F  K+NS++P+ R
Sbjct: 178 KEIQKILKEPVTDIG-LLGFFQGKKNSLLPNSR 209


>sp|Q7Z2Y5|NRK_HUMAN Nik-related protein kinase OS=Homo sapiens GN=NRK
            PE=2 SV=2
          Length = 1582

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 28   LGYSRLLAFNTNALSIESGEALYK---QPWPDIKHIIRID 138
            LG   +L FN  ALS+E+ E L+K   + W DI   I  +
Sbjct: 1468 LGIGMMLTFNAEALSVEANEQLFKKILEMWKDIPSSIAFE 1507


>sp|Q9YEM5|KSGA_AERPE Probable dimethyladenosine transferase
           OS=Aeropyrum pernix GN=ksgA PE=3 SV=1
          Length = 277

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 17  HTKALVIQGCSHLTPML*ASRVVKPCINNHGLISST*LELIYHSAIPWKDHETSGDLQAW 196
           + +AL + GC+       AS+V++ C+   G               PW D  + GD + W
Sbjct: 215 YARALELAGCAFTQRNKKASKVLRRCLEAAGCAPP-----------PWLD--SLGDARVW 261

Query: 197 MIRP 208
           M+RP
Sbjct: 262 MLRP 265


>sp|Q5U3Z3|ISOC2_RAT Isochorismatase domain-containing protein 2,
           mitochondrial OS=Rattus norvegicus GN=Isoc2 PE=2 SV=1
          Length = 210

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 333 KEVQKILKKTIKEAGPILVYFPSKRNSIIPSLR 431
           KE+QKILK+ + E G +L +F    N ++P+ R
Sbjct: 178 KEIQKILKEPVPEIG-LLGFFQGMNNPLLPNSR 209


>sp|Q5YCC5|TMC7_CHICK Transmembrane channel-like protein 7 OS=Gallus
           gallus GN=Tmc7 PE=2 SV=1
          Length = 735

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 347 FLDFLLHLNVSVANWSLFKWWGI 279
           F+DF   L V+  +W L +WWG+
Sbjct: 506 FVDFPRKLLVTYCSWKLVQWWGL 528


>sp|P68438|RAP94_VACCW RNA polymerase-associated
           transcription-specificity factor OS=Vaccinia virus
           (strain Western Reserve) GN=RAP94 PE=1 SV=2
          Length = 795

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 276 GDTPPFEQRPIGYTHIEVQKEVQKILKKTIKEAGPILVYFPSKRN 410
           GD  PFE+  I + H++ +     IL+  +     + VYF +  N
Sbjct: 712 GDPMPFEEELIDHEHVQYKINCYNILRYHLLPDSDVFVYFSNSLN 756


>sp|P68439|RAP94_VACCC RNA polymerase-associated
           transcription-specificity factor OS=Vaccinia virus
           (strain Copenhagen) GN=RAP94 PE=3 SV=1
          Length = 795

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 276 GDTPPFEQRPIGYTHIEVQKEVQKILKKTIKEAGPILVYFPSKRN 410
           GD  PFE+  I + H++ +     IL+  +     + VYF +  N
Sbjct: 712 GDPMPFEEELIDHEHVQYKINCYNILRYHLLPDSDVFVYFSNSLN 756


>sp|O57207|RAP94_VACCA RNA polymerase-associated
           transcription-specificity factor OS=Vaccinia virus
           (strain Ankara) GN=RAP94 PE=3 SV=1
          Length = 795

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 276 GDTPPFEQRPIGYTHIEVQKEVQKILKKTIKEAGPILVYFPSKRN 410
           GD  PFE+  I + H++ +     IL+  +     + VYF +  N
Sbjct: 712 GDPMPFEEELIDHEHVQYKINCYNILRYHLLPDSDVFVYFSNSLN 756


>sp|Q80T62|GP101_MOUSE Probable G-protein coupled receptor 101
           OS=Mus musculus GN=Gpr101 PE=2 SV=2
          Length = 511

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 309 GYTHIEVQKEVQKILKKTIKEAGP 380
           GY H  ++KE+Q++LKK I +  P
Sbjct: 454 GYMHKSIKKEIQEVLKKLICKKSP 477
tr_hit_id Q6L7H7
Definition tr|Q6L7H7|Q6L7H7_9NEOB NADH-ubiquinone oxidoreductase chain 6 OS=Buergeria buergeri
Align length 57
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916069|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F11.
         (446 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6L7H7|Q6L7H7_9NEOB NADH-ubiquinone oxidoreductase chain 6 OS...    34   4.1  
tr|Q6KIR9|Q6KIR9_MYCMO Expressed protein OS=Mycoplasma mobile GN...    33   9.1  
tr|Q12QU2|Q12QU2_SHEDO Methyltransferase type 11 OS=Shewanella d...    33   9.1  

>tr|Q6L7H7|Q6L7H7_9NEOB NADH-ubiquinone oxidoreductase chain 6
           OS=Buergeria buergeri GN=ND6 PE=3 SV=1
          Length = 163

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 410 VSLAWKIDKDWTSLFNGFLENFLDFLLHLNVSVANWSLF-KWWGISCLWSGD*WRIM 243
           +++ W +   W  ++ GF  N       LN+ V +W L  +WWG+S L S   W ++
Sbjct: 86  IAVYWIVIMIWWVVYGGFKVN-------LNIGVGSWFLSNEWWGVSELMSMGGWMLL 135


>tr|Q6KIR9|Q6KIR9_MYCMO Expressed protein OS=Mycoplasma mobile
           GN=MMOB0200 PE=4 SV=1
          Length = 168

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 395 KIDKDWTSLFNGFLENFLDFLLHLNVSVANWSLFKW 288
           K +KD+T+L+ G ++ F  ++ H NVS+ N  +F W
Sbjct: 133 KWNKDYTNLYPGKIDGF--YVYHTNVSIENNGVFNW 166


>tr|Q12QU2|Q12QU2_SHEDO Methyltransferase type 11 OS=Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
           GN=Sden_0896 PE=4 SV=1
          Length = 269

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 380 WTSLFNGFLENFLDFLLHLNVSVANWSLFKWWGISCLWSGD 258
           W+S    +L N LDFL++LN S+          ISC  SG+
Sbjct: 95  WSSFSLSYLRNPLDFLIYLNASMKQGGWIALLDISCFISGN 135