BP916069
Clone id YMU001_000082_F11
Library
Length 446
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GCCATCTCTGTAGTATCATACAAAAGCCTTGGTTATTCAAGGCTGCTCGCATTTAACACC
AATGCTTTAAGCATCGAGAGTGGTGAAGCCTTGTATAAACAACCATGGCCTGATATCAAG
CACATAATTAGAATTGATTTACCACTCTGCTATTCCTTGGAAGGATCATGAAACCTCGGG
TGATCTGCAGGCTTGGATGATCAGGCCTCTCCAAATCGAGAAGAATTTAACATTGTGGGT
TCCATGATCCTCCATTAGTCACCTGACCATAAACAGGAGATACCCCACCATTTGAACAGA
GACCAATTGGCTACACTCACATTGAGGTGCAAAAGGAAGTCCAGAAAATTCTCAAGAAAA
CCATTAAAGAGGCTGGTCCAATCCTTGTCTATTTTCCAAGCAAGCGAAACTCCATCATCC
CTTCATTGCGCATGGGAGAGTACCAT
■■Homology search results ■■ -
sp_hit_id Q9DCC7
Definition sp|Q9DCC7|ISC2B_MOUSE Isochorismatase domain-containing protein 2B, mitochondrial OS=Mus musculus
Align length 33
Score (bit) 33.9
E-value 0.32
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916069|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F11.
(446 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9DCC7|ISC2B_MOUSE Isochorismatase domain-containing protein ... 34 0.32
sp|Q7Z2Y5|NRK_HUMAN Nik-related protein kinase OS=Homo sapiens G... 32 1.6
sp|Q9YEM5|KSGA_AERPE Probable dimethyladenosine transferase OS=A... 30 4.6
sp|Q5U3Z3|ISOC2_RAT Isochorismatase domain-containing protein 2,... 30 4.6
sp|Q5YCC5|TMC7_CHICK Transmembrane channel-like protein 7 OS=Gal... 29 7.8
sp|P68438|RAP94_VACCW RNA polymerase-associated transcription-sp... 29 7.8
sp|P68439|RAP94_VACCC RNA polymerase-associated transcription-sp... 29 7.8
sp|O57207|RAP94_VACCA RNA polymerase-associated transcription-sp... 29 7.8
sp|Q80T62|GP101_MOUSE Probable G-protein coupled receptor 101 OS... 29 7.8

>sp|Q9DCC7|ISC2B_MOUSE Isochorismatase domain-containing protein 2B,
mitochondrial OS=Mus musculus GN=Isoc2b PE=1 SV=1
Length = 210

Score = 33.9 bits (76), Expect = 0.32
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +3

Query: 333 KEVQKILKKTIKEAGPILVYFPSKRNSIIPSLR 431
KE+QKILK+ + + G +L +F K+NS++P+ R
Sbjct: 178 KEIQKILKEPVTDIG-LLGFFQGKKNSLLPNSR 209


>sp|Q7Z2Y5|NRK_HUMAN Nik-related protein kinase OS=Homo sapiens GN=NRK
PE=2 SV=2
Length = 1582

Score = 31.6 bits (70), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1

Query: 28 LGYSRLLAFNTNALSIESGEALYK---QPWPDIKHIIRID 138
LG +L FN ALS+E+ E L+K + W DI I +
Sbjct: 1468 LGIGMMLTFNAEALSVEANEQLFKKILEMWKDIPSSIAFE 1507


>sp|Q9YEM5|KSGA_AERPE Probable dimethyladenosine transferase
OS=Aeropyrum pernix GN=ksgA PE=3 SV=1
Length = 277

Score = 30.0 bits (66), Expect = 4.6
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2

Query: 17 HTKALVIQGCSHLTPML*ASRVVKPCINNHGLISST*LELIYHSAIPWKDHETSGDLQAW 196
+ +AL + GC+ AS+V++ C+ G PW D + GD + W
Sbjct: 215 YARALELAGCAFTQRNKKASKVLRRCLEAAGCAPP-----------PWLD--SLGDARVW 261

Query: 197 MIRP 208
M+RP
Sbjct: 262 MLRP 265


>sp|Q5U3Z3|ISOC2_RAT Isochorismatase domain-containing protein 2,
mitochondrial OS=Rattus norvegicus GN=Isoc2 PE=2 SV=1
Length = 210

Score = 30.0 bits (66), Expect = 4.6
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3

Query: 333 KEVQKILKKTIKEAGPILVYFPSKRNSIIPSLR 431
KE+QKILK+ + E G +L +F N ++P+ R
Sbjct: 178 KEIQKILKEPVPEIG-LLGFFQGMNNPLLPNSR 209


>sp|Q5YCC5|TMC7_CHICK Transmembrane channel-like protein 7 OS=Gallus
gallus GN=Tmc7 PE=2 SV=1
Length = 735

Score = 29.3 bits (64), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1

Query: 347 FLDFLLHLNVSVANWSLFKWWGI 279
F+DF L V+ +W L +WWG+
Sbjct: 506 FVDFPRKLLVTYCSWKLVQWWGL 528


>sp|P68438|RAP94_VACCW RNA polymerase-associated
transcription-specificity factor OS=Vaccinia virus
(strain Western Reserve) GN=RAP94 PE=1 SV=2
Length = 795

Score = 29.3 bits (64), Expect = 7.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3

Query: 276 GDTPPFEQRPIGYTHIEVQKEVQKILKKTIKEAGPILVYFPSKRN 410
GD PFE+ I + H++ + IL+ + + VYF + N
Sbjct: 712 GDPMPFEEELIDHEHVQYKINCYNILRYHLLPDSDVFVYFSNSLN 756


>sp|P68439|RAP94_VACCC RNA polymerase-associated
transcription-specificity factor OS=Vaccinia virus
(strain Copenhagen) GN=RAP94 PE=3 SV=1
Length = 795

Score = 29.3 bits (64), Expect = 7.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3

Query: 276 GDTPPFEQRPIGYTHIEVQKEVQKILKKTIKEAGPILVYFPSKRN 410
GD PFE+ I + H++ + IL+ + + VYF + N
Sbjct: 712 GDPMPFEEELIDHEHVQYKINCYNILRYHLLPDSDVFVYFSNSLN 756


>sp|O57207|RAP94_VACCA RNA polymerase-associated
transcription-specificity factor OS=Vaccinia virus
(strain Ankara) GN=RAP94 PE=3 SV=1
Length = 795

Score = 29.3 bits (64), Expect = 7.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3

Query: 276 GDTPPFEQRPIGYTHIEVQKEVQKILKKTIKEAGPILVYFPSKRN 410
GD PFE+ I + H++ + IL+ + + VYF + N
Sbjct: 712 GDPMPFEEELIDHEHVQYKINCYNILRYHLLPDSDVFVYFSNSLN 756


>sp|Q80T62|GP101_MOUSE Probable G-protein coupled receptor 101
OS=Mus musculus GN=Gpr101 PE=2 SV=2
Length = 511

Score = 29.3 bits (64), Expect = 7.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3

Query: 309 GYTHIEVQKEVQKILKKTIKEAGP 380
GY H ++KE+Q++LKK I + P
Sbjct: 454 GYMHKSIKKEIQEVLKKLICKKSP 477


tr_hit_id Q6L7H7
Definition tr|Q6L7H7|Q6L7H7_9NEOB NADH-ubiquinone oxidoreductase chain 6 OS=Buergeria buergeri
Align length 57
Score (bit) 33.9
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916069|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_F11.
(446 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6L7H7|Q6L7H7_9NEOB NADH-ubiquinone oxidoreductase chain 6 OS... 34 4.1
tr|Q6KIR9|Q6KIR9_MYCMO Expressed protein OS=Mycoplasma mobile GN... 33 9.1
tr|Q12QU2|Q12QU2_SHEDO Methyltransferase type 11 OS=Shewanella d... 33 9.1

>tr|Q6L7H7|Q6L7H7_9NEOB NADH-ubiquinone oxidoreductase chain 6
OS=Buergeria buergeri GN=ND6 PE=3 SV=1
Length = 163

Score = 33.9 bits (76), Expect = 4.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1

Query: 410 VSLAWKIDKDWTSLFNGFLENFLDFLLHLNVSVANWSLF-KWWGISCLWSGD*WRIM 243
+++ W + W ++ GF N LN+ V +W L +WWG+S L S W ++
Sbjct: 86 IAVYWIVIMIWWVVYGGFKVN-------LNIGVGSWFLSNEWWGVSELMSMGGWMLL 135


>tr|Q6KIR9|Q6KIR9_MYCMO Expressed protein OS=Mycoplasma mobile
GN=MMOB0200 PE=4 SV=1
Length = 168

Score = 32.7 bits (73), Expect = 9.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -1

Query: 395 KIDKDWTSLFNGFLENFLDFLLHLNVSVANWSLFKW 288
K +KD+T+L+ G ++ F ++ H NVS+ N +F W
Sbjct: 133 KWNKDYTNLYPGKIDGF--YVYHTNVSIENNGVFNW 166


>tr|Q12QU2|Q12QU2_SHEDO Methyltransferase type 11 OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=Sden_0896 PE=4 SV=1
Length = 269

Score = 32.7 bits (73), Expect = 9.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1

Query: 380 WTSLFNGFLENFLDFLLHLNVSVANWSLFKWWGISCLWSGD 258
W+S +L N LDFL++LN S+ ISC SG+
Sbjct: 95 WSSFSLSYLRNPLDFLIYLNASMKQGGWIALLDISCFISGN 135