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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916071
Clone id YMU001_000082_G01
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATGTCTATTTCAATCGAAAACCATTGTAGGTGATTCCGTTGGCTTA
ACTAAAGTACTTCATTTGCTTGCACTAGACCATTGTAGAATTTACCAGCTTTCGCAATCC
TACTCTCTTATGAGTTTCTCTAGAGTGTATCTTTTAAAGTGGGTAGGAACTCCCAGATTG
GTGTCTCTCTCCCGGACTACGTGCTATGAGCTCCTTCCAAGTTTCCTCAATACCTGCTTG
TAATCTTGGACAGGACCATAGAGCACAAATGGCAGGAATGGATAGGGCTCACAGAGCACA
TTACAAGAGCCATGGTTTAGGGATGGAGCCATCATTCATCTCTCTACACACATCACAATG
CTTTGGATGCATTATCTGATATAGTTCATCATGAATCTTTAAACCAGTTACACAGATTAT
TCATAAACGTAGCACCACATAGCCTTATCACTCATTCCCAA
■■Homology search results ■■ -
sp_hit_id Q8VY10
Definition sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana
Align length 62
Score (bit) 30.8
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916071|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G01.
         (443 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 2...    31   2.6  
sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 PE=...    31   2.6  
sp|Q9BYT1|CT059_HUMAN Uncharacterized MFS-type transporter C20or...    30   4.5  
sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus G...    29   7.7  
sp|Q2J619|ENO_FRASC Enolase OS=Frankia sp. (strain CcI3) GN=eno ...    29   7.7  
sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens G...    29   10.0 
sp|Q7MJ43|ATE_VIBVY Putative arginyl-tRNA--protein transferase O...    29   10.0 
sp|Q8DAR7|ATE_VIBVU Putative arginyl-tRNA--protein transferase O...    29   10.0 

>sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 24
           OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1
          Length = 907

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 89  SFRNPTLL*VSLECIF*SG*ELPDWCLSPGLR--AMSSFQVSSIPACNLGQDHRAQMAGM 262
           + +NP  L   L C+  +  +L DWC+ PG     ++  Q  ++ A NL + H+    G 
Sbjct: 225 ALQNPESL-TLLPCVSHASWQLGDWCILPGSSHCDIAERQTPNVAAYNLNECHKTFQKGF 283

Query: 263 DR 268
           +R
Sbjct: 284 NR 285


>sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 PE=2
           SV=2
          Length = 1866

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 167 LSPGLRAMSSFQVSSIPACNLGQDHRAQMAGMDRAHRAHYKSHGLGMEPS 316
           L PG R M++ +   +PAC   +     M G D      Y +H    +PS
Sbjct: 336 LLPGCRVMATSRPGKLPACLPAEAAMVHMLGFDGPRVEEYVNHFFSAQPS 385


>sp|Q9BYT1|CT059_HUMAN Uncharacterized MFS-type transporter C20orf59
           OS=Homo sapiens GN=C20orf59 PE=2 SV=2
          Length = 436

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
 Frame = +1

Query: 22  VGDSVGLTKVLHL--------LALDHCRIYQLSQSYSLMSFSRVY--LLKWVGTPRLVSL 171
           +GD +G  KV+ L         A+     +  S   + M+FSR+   LL+ V  P L SL
Sbjct: 83  LGDRIGGEKVILLSASAWGSITAVTPLLAHLSSAHLAFMTFSRILMGLLQGVYFPALTSL 142

Query: 172 SRTTCYELLPSFLNTCL*SWTGP*STNGRNG*GSQSTLQEPWFRDGAIIHLSTHITMLWM 351
                 E   +F  + +    G  S  G    G+  +L   W+   +I + S  +T+LW+
Sbjct: 143 LSQKVRESERAFTYSIV----GAGSQFGTLLTGAVGSLLLEWYGWQSIFYFSGGLTLLWV 198

Query: 352 HYLI*FIMN 378
            Y+  ++++
Sbjct: 199 WYVYRYLLS 207


>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus
           GN=Papolg PE=1 SV=1
          Length = 739

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +3

Query: 201 KFPQYLLVILDRTIEHKWQEWIGLTEHITRAMV*GWSHHSSL-YTHHNALDALSDIVHHE 377
           K+  Y+++    + E    EW+GL E   R +V     +  +   H N      +  HH+
Sbjct: 369 KYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHK 428

Query: 378 SLNQLHRLFINV 413
           + N +   F+ +
Sbjct: 429 ANNYVSMWFLGI 440


>sp|Q2J619|ENO_FRASC Enolase OS=Frankia sp. (strain CcI3) GN=eno
           PE=3 SV=1
          Length = 427

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 108 SYEFL*SVSFKVGRNSQIGVSLPDYVL*APSKFPQYLLVILDRTIEHKWQEWIGLTEHI 284
           S EF    S+    NS+    L DY     S +P  ++ I D   E  W  W+ LTE +
Sbjct: 244 STEFYADGSYTFEGNSRSAEYLSDYYAELVSAYP--IVSIEDPLAEDDWDGWVALTERL 300


>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens
           GN=PAPOLG PE=1 SV=2
          Length = 736

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +3

Query: 201 KFPQYLLVILDRTIEHKWQEWIGLTEHITRAMV*GWSHHSSL-YTHHNALDALSDIVHHE 377
           K+  Y+++    + E    EW+GL E   R +V     +  +   H N      +  HH+
Sbjct: 369 KYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHK 428

Query: 378 SLNQLHRLFINV 413
             N +   F+ +
Sbjct: 429 DNNYVSMWFLGI 440


>sp|Q7MJ43|ATE_VIBVY Putative arginyl-tRNA--protein transferase
           OS=Vibrio vulnificus (strain YJ016) GN=ate PE=3 SV=1
          Length = 232

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 354 MHPKHCDVCREMNDGSIPKPWL-L*CAL*ALSIPAICALWSCPRLQAGIEETWKELIARS 178
           ++  HCD C       I  P + L  +   L   A    WS  R    ++E W +L +R 
Sbjct: 57  IYKPHCDSCHSCQPIRISVPDIELSRSQKRLLAKARSLSWSMKR---NMDENWFDLYSRY 113

Query: 177 PGERHQSGSSYP 142
              RH++G+ YP
Sbjct: 114 IVARHRNGTMYP 125


>sp|Q8DAR7|ATE_VIBVU Putative arginyl-tRNA--protein transferase
           OS=Vibrio vulnificus GN=ate PE=3 SV=2
          Length = 232

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 354 MHPKHCDVCREMNDGSIPKPWL-L*CAL*ALSIPAICALWSCPRLQAGIEETWKELIARS 178
           ++  HCD C       I  P + L  +   L   A    WS  R    ++E W +L +R 
Sbjct: 57  IYKPHCDSCHSCQPIRISVPDIELSRSQKRLLAKARSLSWSMKR---NMDENWFDLYSRY 113

Query: 177 PGERHQSGSSYP 142
              RH++G+ YP
Sbjct: 114 IVARHRNGTMYP 125
tr_hit_id B0URY2
Definition tr|B0URY2|B0URY2_HAES2 RNA-directed DNA polymerase OS=Haemophilus somnus (strain 2336)
Align length 40
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916071|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G01.
         (443 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0URY2|B0URY2_HAES2 RNA-directed DNA polymerase OS=Haemophilu...    34   3.1  
tr|Q38JB1|Q38JB1_TORRU Temperature-induced lipocalin OS=Tortula ...    34   4.1  
tr|Q3K489|Q3K489_PSEPF Putative uncharacterized protein OS=Pseud...    33   7.0  
tr|B6HAK2|B6HAK2_PENCH Pc16g13110 protein OS=Penicillium chrysog...    33   9.2  

>tr|B0URY2|B0URY2_HAES2 RNA-directed DNA polymerase OS=Haemophilus
           somnus (strain 2336) GN=HSM_0539 PE=4 SV=1
          Length = 575

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 303 GWSHHSSLYTHHNALDALSD--IVHHESLNQLHRLFINVA 416
           GW  H  +Y  +   D+L++  +VH E   Q+HRL +NVA
Sbjct: 532 GWHDHHIIYKMYGGTDSLNNRCLVHPECHQQIHRLNLNVA 571


>tr|Q38JB1|Q38JB1_TORRU Temperature-induced lipocalin OS=Tortula
           ruralis GN=TIL PE=2 SV=1
          Length = 186

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 267 LSIPAICALWSCPRLQAGIEETWKELIARSPGERHQSGSSYPL*KIHSRETHKRVG 100
           + +P   +LW   R Q   EET+KEL+       H +   Y + K+H  E +  VG
Sbjct: 116 VGVPDRTSLWVLSRTQEMSEETYKELV------EHAANEGYDVSKLHKTEQNPEVG 165


>tr|Q3K489|Q3K489_PSEPF Putative uncharacterized protein
           OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pf01_5679
           PE=4 SV=1
          Length = 434

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 330 THHNALDALSDIVHHESLNQLHR 398
           THH+A +ALSDI+HH   NQ +R
Sbjct: 252 THHDAEEALSDILHHLYKNQTYR 274


>tr|B6HAK2|B6HAK2_PENCH Pc16g13110 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc16g13110 PE=4 SV=1
          Length = 440

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 311 APSLNHGSCNVLCEPYPFLPFVLYGPVQDYK 219
           AP L H +  VLC P    P +LYGP + Y+
Sbjct: 24  APILRHSATTVLCNPSISTPALLYGPDEGYE 54