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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916074
Clone id YMU001_000082_G04
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATAATAATATCAGCATGTACATGTAAAGGGTGGGCTGGATTTGCAATACATCACAAAGC
TTACATATATCATTGACACTGACTAAATGCTTTACAAAGAAGCATCCCCATTGGTTAATC
AGTATACTCAATTGAAAAGAGCACTTTGAAAGAGACCCCTGCATTTTGGCATTACCTCAG
ATTCTGTCATCTTGCCTTCACATCTCTCTCAATGAGGGGTACTTCGCTTGTGTAGTAGCC
CTCACATTCCATTGAGTTAAGTATCAGGAAGCTCACTTATGCCCCATCATCATCACACGA
CGCAGCCGTGCAGACGCTGCATGTATGCGGAGGCCTGATCATGCCCTTACCTTCCTTGTG
GATTCACCAGCTGCGAGAAGACAGCACTTGCAGTAGTCTCATCTGAATCCTCACTAAACA
TAGCACTATTGTGACTAATATCCATCTTCTTTGCATCCATTTCTGAGAGCTCAACCTCCG
GAACAACCTTCAAGTCTATCTCCTTCACTCGCGGATTGCTCATGTCCAGCTCC
■■Homology search results ■■ -
sp_hit_id B0T142
Definition sp|B0T142|MUTS_CAUSK DNA mismatch repair protein mutS OS=Caulobacter sp. (strain K31)
Align length 21
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916074|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G04.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0T142|MUTS_CAUSK DNA mismatch repair protein mutS OS=Cauloba...    32   1.5  
sp|Q9AC54|MUTS_CAUCR DNA mismatch repair protein mutS OS=Cauloba...    32   1.5  
sp|P38069|TTP1_YEAST Protein TTP1 OS=Saccharomyces cerevisiae GN...    31   3.3  
sp|Q28DG8|THOC5_XENTR THO complex subunit 5 homolog OS=Xenopus t...    31   4.3  
sp|Q6DFL5|THO5A_XENLA THO complex subunit 5 homolog A OS=Xenopus...    31   4.3  
sp|Q7ZXA8|THO5B_XENLA THO complex subunit 5 homolog B OS=Xenopus...    30   9.5  

>sp|B0T142|MUTS_CAUSK DNA mismatch repair protein mutS
           OS=Caulobacter sp. (strain K31) GN=mutS PE=3 SV=1
          Length = 904

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 293 SHDAAVQTLHVCGGLIMPLPS 355
           S D   QTL +CGGLI P+PS
Sbjct: 197 SDDLLAQTLKICGGLIQPMPS 217


>sp|Q9AC54|MUTS_CAUCR DNA mismatch repair protein mutS
           OS=Caulobacter crescentus GN=mutS PE=3 SV=1
          Length = 903

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 293 SHDAAVQTLHVCGGLIMPLPS 355
           S D+  QTL +CGGL+ P+PS
Sbjct: 198 SDDSLSQTLRICGGLVQPMPS 218


>sp|P38069|TTP1_YEAST Protein TTP1 OS=Saccharomyces cerevisiae
           GN=TTP1 PE=1 SV=1
          Length = 597

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 526 DMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNSAMFSEDSDETTASAVFSQLVNPQG 353
           D++ P V   DLK + +V LS++D    D+S  S     +  +  A+A+ S   N  G
Sbjct: 324 DITPPAVYTKDLKDLSDVPLSDLDGTIPDVSTESGQLMINKTKHLATALLSLFYNVNG 381


>sp|Q28DG8|THOC5_XENTR THO complex subunit 5 homolog OS=Xenopus
           tropicalis GN=thoc5 PE=2 SV=1
          Length = 678

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 61  LHISLTLTKCFTKKHPHWLISILN*KEHFERDPCILALPQILSSCLH 201
           +H+   +TKC   K  H  I +++ +E +   P  ++ P+I S+  H
Sbjct: 133 MHLQKEITKCLEFKSKHEEIELVSVEEFYSEAPATISKPEITSTDSH 179


>sp|Q6DFL5|THO5A_XENLA THO complex subunit 5 homolog A OS=Xenopus
           laevis GN=thoc5-A PE=2 SV=1
          Length = 678

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 61  LHISLTLTKCFTKKHPHWLISILN*KEHFERDPCILALPQILSSCLH 201
           +H+   +TKC   K  H  I +++ +E + + P  ++ P+I S+  H
Sbjct: 133 MHLQKEITKCLEFKSKHEEIELVSVEEFYSKAPVAISKPEITSTDPH 179


>sp|Q7ZXA8|THO5B_XENLA THO complex subunit 5 homolog B OS=Xenopus
           laevis GN=thoc5-B PE=2 SV=1
          Length = 678

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 61  LHISLTLTKCFTKKHPHWLISILN*KEHFERDPCILALPQILSSCLH 201
           +H+   +TKC   K  H  I +++ +E +   P  ++ P+I S+  H
Sbjct: 133 MHLQKEITKCLEFKSKHEEIELVSVEEFYSDAPAAISKPEITSTDPH 179
tr_hit_id A7VM23
Definition tr|A7VM23|A7VM23_MARPO Receptor-like kinase OS=Marchantia polymorpha
Align length 50
Score (bit) 40.4
E-value 0.057
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916074|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G04.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7VM23|A7VM23_MARPO Receptor-like kinase OS=Marchantia polymo...    40   0.057
tr|Q8VZH5|Q8VZH5_CAPAN Receptor protein kinase-like protein OS=C...    39   0.17 
tr|Q9SCZ4|Q9SCZ4_ARATH Receptor-protein kinase-like protein OS=A...    37   0.83 
tr|Q94C93|Q94C93_ARATH Putative receptor-protein kinase OS=Arabi...    37   0.83 
tr|Q0WM33|Q0WM33_ARATH Receptor protein kinase like protein (Fra...    37   0.83 
tr|A7U523|A7U523_ARATH FERONIA receptor-like kinase OS=Arabidops...    37   0.83 
tr|A7U519|A7U519_ARALY FERONIA receptor-like kinase OS=Arabidops...    37   0.83 
tr|A9Z0N7|A9Z0N7_PONTR FERONIA receptor-like kinase (Fragment) O...    36   1.1  
tr|A7PTJ9|A7PTJ9_VITVI Chromosome chr8 scaffold_29, whole genome...    36   1.1  
tr|Q94EF4|Q94EF4_ORYSJ Putative uncharacterized protein P0665A11...    35   2.4  
tr|B4FYK2|B4FYK2_MAIZE Putative uncharacterized protein OS=Zea m...    35   2.4  
tr|A2ZY82|A2ZY82_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|A2WVH5|A2WVH5_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|Q10LW0|Q10LW0_ORYSJ Os03g0333200 protein OS=Oryza sativa subs...    35   3.2  
tr|B8ANY8|B8ANY8_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.2  
tr|A7U522|A7U522_CARFL FERONIA receptor-like kinase OS=Cardamine...    35   3.2  
tr|A7U521|A7U521_CARFL FERONIA receptor-like kinase OS=Cardamine...    35   3.2  
tr|A7U520|A7U520_CARFL FERONIA receptor-like kinase OS=Cardamine...    35   3.2  
tr|A7U518|A7U518_CARFL FERONIA receptor-like kinase OS=Cardamine...    35   3.2  
tr|A7U517|A7U517_BRAOL FERONIA receptor-like kinase OS=Brassica ...    35   3.2  
tr|A3AHM5|A3AHM5_ORYSJ Putative uncharacterized protein OS=Oryza...    35   3.2  
tr|A7P1H0|A7P1H0_VITVI Chromosome chr19 scaffold_4, whole genome...    34   5.4  
tr|Q7RQH6|Q7RQH6_PLAYO XPG I-region, putative (Fragment) OS=Plas...    33   9.2  

>tr|A7VM23|A7VM23_MARPO Receptor-like kinase OS=Marchantia
           polymorpha GN=MpRLK7 PE=2 SV=1
          Length = 894

 Score = 40.4 bits (93), Expect = 0.057
 Identities = 23/50 (46%), Positives = 33/50 (66%)
 Frame = -2

Query: 499 IDLKVVPEVELSEMDAKKMDISHNSAMFSEDSDETTASAVFSQLVNPQGR 350
           I+L+ +   E  E D   +  +++S    E+S++ TASAVFSQLVNPQGR
Sbjct: 848 IELRPLRTPEPEEAD---LTTTNHSIDSEEESEDATASAVFSQLVNPQGR 894


>tr|Q8VZH5|Q8VZH5_CAPAN Receptor protein kinase-like protein
           OS=Capsicum annuum PE=2 SV=1
          Length = 648

 Score = 38.9 bits (89), Expect = 0.17
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = -2

Query: 496 DLKVVPEVELSEMDAKKMDISHN---SAMFSEDSDETTASAVFSQLVNPQGR 350
           DL   P  + S  D++   IS +    ++ SE+SD  T SAVFSQ++NP+GR
Sbjct: 597 DLNAFPGYDESMTDSRSSGISMSIGGHSLASENSDGLTPSAVFSQIMNPKGR 648


>tr|Q9SCZ4|Q9SCZ4_ARATH Receptor-protein kinase-like protein
            OS=Arabidopsis thaliana GN=F26O13.190 PE=1 SV=1
          Length = 895

 Score = 36.6 bits (83), Expect = 0.83
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -2

Query: 526  DMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVNPQGR 350
            D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++NP+GR
Sbjct: 836  DDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 895


>tr|Q94C93|Q94C93_ARATH Putative receptor-protein kinase
            OS=Arabidopsis thaliana GN=At3g51550 PE=2 SV=1
          Length = 895

 Score = 36.6 bits (83), Expect = 0.83
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -2

Query: 526  DMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVNPQGR 350
            D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++NP+GR
Sbjct: 836  DDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 895


>tr|Q0WM33|Q0WM33_ARATH Receptor protein kinase like protein
           (Fragment) OS=Arabidopsis thaliana GN=At3g51550 PE=2
           SV=1
          Length = 182

 Score = 36.6 bits (83), Expect = 0.83
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -2

Query: 526 DMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVNPQGR 350
           D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++NP+GR
Sbjct: 123 DDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 182


>tr|A7U523|A7U523_ARATH FERONIA receptor-like kinase OS=Arabidopsis
            thaliana GN=FER PE=4 SV=1
          Length = 893

 Score = 36.6 bits (83), Expect = 0.83
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -2

Query: 526  DMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVNPQGR 350
            D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++NP+GR
Sbjct: 834  DDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 893


>tr|A7U519|A7U519_ARALY FERONIA receptor-like kinase OS=Arabidopsis
            lyrata GN=FER PE=4 SV=1
          Length = 891

 Score = 36.6 bits (83), Expect = 0.83
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -2

Query: 526  DMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVNPQGR 350
            D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++NP+GR
Sbjct: 832  DDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 891


>tr|A9Z0N7|A9Z0N7_PONTR FERONIA receptor-like kinase (Fragment)
           OS=Poncirus trifoliata PE=2 SV=1
          Length = 447

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -2

Query: 424 AMFSEDSDETTASAVFSQLVNPQGR 350
           ++ SEDSD  T SAVFSQ++NP+GR
Sbjct: 423 SLASEDSDGLTPSAVFSQIMNPKGR 447


>tr|A7PTJ9|A7PTJ9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00023386001 PE=4 SV=1
          Length = 463

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -2

Query: 424 AMFSEDSDETTASAVFSQLVNPQGR 350
           ++ SEDSD  T SAVFSQ++NP+GR
Sbjct: 439 SLASEDSDGLTPSAVFSQIMNPKGR 463


>tr|Q94EF4|Q94EF4_ORYSJ Putative uncharacterized protein P0665A11.8
           (Os01g0769700 protein) (Putative uncharacterized protein
           B1143G03.32) OS=Oryza sativa subsp. japonica
           GN=P0665A11.8 PE=4 SV=1
          Length = 896

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 481 PEVELSEMDAKKMDISH-NSAMFSEDSDETTASAVFSQLVNPQGR 350
           P +E S        IS  + ++ S DSD  T SAVFSQ++NP+GR
Sbjct: 852 PSIESSTTTTTTTSISMGDQSVASIDSDGLTPSAVFSQIMNPKGR 896