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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916077
Clone id YMU001_000082_G07
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAACATTCCAGTAGACATGCAATGAACAGGTGAAGTGGCCGGTTGGGGAGAGAAATAAAA
ACCAAAAAAGCACCGGTTAGTGCCTCAGTGCGAGCAACTTGAATCTACACCACTGAAGCA
CCCTCAAAGCTGCCGTCACAAATAAAGTCTGGTGGCCACCCCAAGAGAGATCTCTCCCTT
CTTCTAATAAACTCTGTATCTAGAGTCTTGTAAGCTATACCGAATATATACATTGCTGGA
TGAAGCAAACCCAGATGTTTGCCTGCCCAGTCAGGTGATGCTCCAGCGTGCTTTGATCCT
CTCTGCCACCTACGAAAGAGCGTTTCTATGTACCAACCTCCAATGTCATGCTTCTCACAG
CGTGGCTCAAAAAGCCAATACTTGCTCGATGGCAATCGTGCACGGGTTGATTTACACTCG
CACAACATCCTCCGGCCATCAATCTTGAACCAATGCATG
■■Homology search results ■■ -
sp_hit_id Q9USY7
Definition sp|Q9USY7|FZO1_SCHPO Transmembrane GTPase fzo1 OS=Schizosaccharomyces pombe
Align length 82
Score (bit) 31.6
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916077|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G07.
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9USY7|FZO1_SCHPO Transmembrane GTPase fzo1 OS=Schizosaccharo...    32   1.7  
sp|Q6NRL1|AGAP1_XENLA Arf-GAP, GTPase, ANK repeat and PH domain-...    31   2.3  
sp|O34368|GUTA_BACSU Probable glucitol transport protein gutA OS...    30   5.0  
sp|Q6ZSI9|CAN12_HUMAN Calpain-12 OS=Homo sapiens GN=CAPN12 PE=2 ...    30   6.6  
sp|A6M1Z6|ARGC_CLOB8 N-acetyl-gamma-glutamyl-phosphate reductase...    30   6.6  
sp|P34077|NIC96_YEAST Nucleoporin NIC96 OS=Saccharomyces cerevis...    29   8.5  
sp|Q4AAD3|SYA_MYCHJ Alanyl-tRNA synthetase OS=Mycoplasma hyopneu...    29   8.6  
sp|Q1XDC4|CCS1_PORYE Cytochrome c biogenesis protein ccs1 OS=Por...    29   8.6  

>sp|Q9USY7|FZO1_SCHPO Transmembrane GTPase fzo1
           OS=Schizosaccharomyces pombe GN=fzo1 PE=2 SV=1
          Length = 758

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
 Frame = +2

Query: 215 LYRIYTLLDEANPDVCLPSQVMLQRALILSATYERAFL------CTNLQCHASHSVAQKA 376
           L+ +++ +++ +  + +   +   ++ + +A   +  L      CT + C    +     
Sbjct: 143 LFSLFSRVEDTSSKILITGDLNAGKSTLCNALVHKDILPEDQQPCTEVFCEVHDAELNDG 202

Query: 377 NTCSMAIVHGLIYTRTTSSGHQ 442
             C  AI HGL Y+ T SS ++
Sbjct: 203 KDCVHAIPHGLTYSHTDSSTYK 224


>sp|Q6NRL1|AGAP1_XENLA Arf-GAP, GTPase, ANK repeat and PH
           domain-containing protein 1 OS=Xenopus laevis GN=agap1
           PE=2 SV=1
          Length = 864

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -2

Query: 278 SPDWAGKHLGLLHPAMYIFGIAYKTLDTEFIRRRERSLLGWPPDFI 141
           SPDWA  +LG L   +   GI ++ L T   R R   L  WPP+ I
Sbjct: 634 SPDWASLNLGAL-MCIECSGI-HRNLGTHLSRVRSLDLDDWPPELI 677


>sp|O34368|GUTA_BACSU Probable glucitol transport protein gutA
           OS=Bacillus subtilis GN=gutA PE=3 SV=1
          Length = 463

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 163 WGGHQTLFVTAALRVLQWCRFKLLALRH*PVLFWFLFLSPTGHFTCSLH 17
           WG  Q + +TAAL ++ +           P++F +LF S  G FT  L+
Sbjct: 307 WGRKQVMIITAALSLISYAGLHFTPYSSIPLIFIWLFAS--GFFTTPLN 353


>sp|Q6ZSI9|CAN12_HUMAN Calpain-12 OS=Homo sapiens GN=CAPN12 PE=2
           SV=1
          Length = 719

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 341 GGWYIETLFRRWQRGSKHAGASPD 270
           GGW++ T   RW RG    G+ P+
Sbjct: 352 GGWHVHTFQGRWVRGFNSGGSQPN 375


>sp|A6M1Z6|ARGC_CLOB8 N-acetyl-gamma-glutamyl-phosphate reductase
           OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
           8052) GN=argC PE=3 SV=1
          Length = 344

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 299 LSATYERAFLCTNLQCHASHSVAQKANTCSMAIVHGL 409
           +S  Y+     TNL C ++H V +K +    A+ HGL
Sbjct: 42  ISNIYKNFLSKTNLICESAHDVVEKCDVIFTALPHGL 78


>sp|P34077|NIC96_YEAST Nucleoporin NIC96 OS=Saccharomyces cerevisiae
           GN=NIC96 PE=1 SV=2
          Length = 839

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 313 RKSVSMYQPPMSCFSQRGSKSQYLLDGNRARVDLHSHNILRPSILN 450
           +KS+S   P +  +   G+K   +L+ N +R++++ +NILR    N
Sbjct: 172 KKSISSLDPKLPSW---GNKGNNILNSNESRLNVNENNILREKFEN 214


>sp|Q4AAD3|SYA_MYCHJ Alanyl-tRNA synthetase OS=Mycoplasma
           hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)
           GN=alaS PE=3 SV=2
          Length = 883

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 269 WAGKHLGLLHPAMY-IFGIAYKTLDTEF 189
           W GK LG+ HP +Y +  I  KTLD  F
Sbjct: 320 WNGKELGISHPFLYKLVEIVGKTLDYRF 347


>sp|Q1XDC4|CCS1_PORYE Cytochrome c biogenesis protein ccs1
           OS=Porphyra yezoensis GN=ccs1 PE=3 SV=1
          Length = 440

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -3

Query: 199 IQSLLEEGRDLSWGGHQTLFVTAALRVLQWCRFKLLALRH*PVLFWF---LFLSPTGHFT 29
           I +++E+ ++ S+   Q         +L W   +L    H    +WF   LF+     FT
Sbjct: 41  IGTVIEQNKESSFYQTQYTLSNEYYNILNWKNIELFGFNHVYTTWWFLSLLFIFSLSLFT 100

Query: 28  CSL 20
           CS+
Sbjct: 101 CSI 103
tr_hit_id A7PLM4
Definition tr|A7PLM4|A7PLM4_VITVI Chromosome chr7 scaffold_20, whole genome shotgun sequence OS=Vitis vinifera
Align length 101
Score (bit) 105.0
E-value 1.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916077|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G07.
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PLM4|A7PLM4_VITVI Chromosome chr7 scaffold_20, whole genome...   105   1e-21
tr|Q94H94|Q94H94_ORYSJ Os03g0761700 protein OS=Oryza sativa subs...    97   3e-19
tr|Q8W5I0|Q8W5I0_ORYSJ Putative uncharacterized protein OSJNBa00...    97   3e-19
tr|A2XM85|A2XM85_ORYSI Putative uncharacterized protein OS=Oryza...    97   3e-19
tr|B4FFS2|B4FFS2_MAIZE Putative uncharacterized protein OS=Zea m...    96   7e-19
tr|A9SC56|A9SC56_PHYPA Predicted protein OS=Physcomitrella paten...    85   2e-15
tr|A5BTP1|A5BTP1_VITVI Putative uncharacterized protein OS=Vitis...    77   6e-13
tr|A8IZL9|A8IZL9_CHLRE Predicted protein (Fragment) OS=Chlamydom...    60   4e-08
tr|A5PDK9|A5PDK9_9SPHN Transketolase OS=Erythrobacter sp. SD-21 ...    35   1.9  
tr|A7HEC6|A7HEC6_ANADF Putative uncharacterized protein OS=Anaer...    34   3.2  
tr|O55798|O55798_9FLAV NS5 protein (Fragment) OS=Gadgets Gully v...    34   3.2  
tr|A9YQ92|A9YQ92_9FLAV NS5 protein (Fragment) OS=Gadgets Gully v...    34   3.2  
tr|A0EKU2|A0EKU2_9FLAV Polyprotein OS=Gadgets Gully virus PE=4 SV=1    34   3.2  
tr|B6QQP9|B6QQP9_PENMA C6 finger domain protein, putative OS=Pen...    33   7.0  
tr|B3QQK4|B3QQK4_CHLP8 Membrane protein-like protein OS=Chloroba...    33   7.1  
tr|Q4FW33|Q4FW33_LEIMA Putative uncharacterized protein OS=Leish...    33   7.1  
tr|B6LMA3|B6LMA3_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|Q0B7A9|Q0B7A9_BURCM Transketolase domain protein OS=Burkholde...    33   9.2  
tr|B1FZI5|B1FZI5_9BURK Transketolase domain protein OS=Burkholde...    33   9.2  
tr|B1F898|B1F898_9BURK Transketolase domain protein OS=Burkholde...    33   9.2  

>tr|A7PLM4|A7PLM4_VITVI Chromosome chr7 scaffold_20, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019629001
           PE=4 SV=1
          Length = 523

 Score =  105 bits (261), Expect = 1e-21
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
 Frame = -2

Query: 458 MHWFKIDGRRMLCECKSTRARLPSSKYWLFEPRCEKHDIGGWYIETL---FRRWQRGSKH 288
           MHW+++     +CEC+ +RARLP SKYWLFEPRC  HDIGGWY+ET     + W   S+ 
Sbjct: 404 MHWYQVGDEVSVCECRCSRARLPPSKYWLFEPRCGMHDIGGWYVETFGKDKKGWTIPSQR 463

Query: 287 AGASPDWAGKHLGLLHPAMYIFGIAYKTLDTEFIRRRERSL 165
                D   ++   +HPAMY+  +AY+TLD E  RRR+R++
Sbjct: 464 YWDGFDAHEQYEKRVHPAMYLLALAYRTLDLEDARRRKRTV 504


>tr|Q94H94|Q94H94_ORYSJ Os03g0761700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0048A17.22 PE=2 SV=1
          Length = 505

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
 Frame = -2

Query: 458 MHWFKIDGRRMLCECKSTRARLPSSKYWLFEPRCEKHDIGGWYIETLFRRWQRGSKHAGA 279
           MHW+++      CEC+ +RARLP S+YWLFEPRC  HD GGWYIET F R ++G K   +
Sbjct: 381 MHWYQVGDEISPCECRCSRARLPPSRYWLFEPRCYMHDTGGWYIET-FGRDKKGRKIL-S 438

Query: 278 SPDWAGKH---LGLLHPAMYIFGIAYKTLDTEFIRRRERSL 165
              W G +      LHPAMY+  +AY++LD E  +R++ S+
Sbjct: 439 PRQWDGSNEHSERRLHPAMYLAALAYRSLDIEDAQRKKWSI 479


>tr|Q8W5I0|Q8W5I0_ORYSJ Putative uncharacterized protein
           OSJNBa0002J24.1 (Fragment) OS=Oryza sativa subsp.
           japonica GN=OSJNBa0002J24.1 PE=4 SV=1
          Length = 313

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
 Frame = -2

Query: 458 MHWFKIDGRRMLCECKSTRARLPSSKYWLFEPRCEKHDIGGWYIETLFRRWQRGSKHAGA 279
           MHW+++      CEC+ +RARLP S+YWLFEPRC  HD GGWYIET F R ++G K   +
Sbjct: 189 MHWYQVGDEISPCECRCSRARLPPSRYWLFEPRCYMHDTGGWYIET-FGRDKKGRKIL-S 246

Query: 278 SPDWAGKH---LGLLHPAMYIFGIAYKTLDTEFIRRRERSL 165
              W G +      LHPAMY+  +AY++LD E  +R++ S+
Sbjct: 247 PRQWDGSNEHSERRLHPAMYLAALAYRSLDIEDAQRKKWSI 287


>tr|A2XM85|A2XM85_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13632 PE=4 SV=1
          Length = 505

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
 Frame = -2

Query: 458 MHWFKIDGRRMLCECKSTRARLPSSKYWLFEPRCEKHDIGGWYIETLFRRWQRGSKHAGA 279
           MHW+++      CEC+ +RARLP S+YWLFEPRC  HD GGWYIET F R ++G K   +
Sbjct: 381 MHWYQVGDEISPCECRCSRARLPPSRYWLFEPRCYMHDTGGWYIET-FGRDKKGRKIL-S 438

Query: 278 SPDWAGKH---LGLLHPAMYIFGIAYKTLDTEFIRRRERSL 165
              W G +      LHPAMY+  +AY++LD E  +R++ S+
Sbjct: 439 PRQWDGSNEHSERRLHPAMYLAALAYRSLDIEDAQRKKWSI 479


>tr|B4FFS2|B4FFS2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 501

 Score = 96.3 bits (238), Expect = 7e-19
 Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
 Frame = -2

Query: 458 MHWFKIDGRRMLCECKSTRARLPSSKYWLFEPRCEKHDIGGWYIETLFRRWQRGSKHAGA 279
           MHW+++      CEC+ +RARLP S+YWLFEPRC  HD GGWYIET  R   +  +   +
Sbjct: 384 MHWYQVGDTVSPCECRCSRARLPPSRYWLFEPRCYMHDTGGWYIETYGR--DKKGRTIPS 441

Query: 278 SPDWAGKH---LGLLHPAMYIFGIAYKTLDTEFIRRRE---RSLLGW 156
              W G +      LHPAMY+  +AY++LD E   RR     SLL W
Sbjct: 442 QRQWDGSNEHSEKRLHPAMYLAALAYRSLDLEDAGRRRWNVTSLLQW 488


>tr|A9SC56|A9SC56_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164061 PE=4 SV=1
          Length = 533

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
 Frame = -2

Query: 458 MHWFKIDGRRMLCECKSTRARLPSSKYWLFEPRCEKHDIGGWYIETLFRRWQRGSKHAGA 279
           M WFK  G    CEC+  RA L  S+YW+F PR   H+IGGWYIE+   + +    H+G 
Sbjct: 410 MTWFKEGGS---CECRCRRASLLPSRYWIFAPRSATHNIGGWYIESWNTQVRHVKYHSGE 466

Query: 278 SPDWAG-------KHLGLLHPAMYIFGIAYKTLDTEFIRRRERS 168
           S D  G        +L  + PAMYIF  AYKTLD E  +RR+ S
Sbjct: 467 SGDKYGVISSTDQGNLSKIDPAMYIFATAYKTLDEEAAKRRKFS 510


>tr|A5BTP1|A5BTP1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039225 PE=4 SV=1
          Length = 545

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 23/121 (19%)
 Frame = -2

Query: 458 MHWFKIDGRRMLCECKSTRARLPSS-----------------------KYWLFEPRCEKH 348
           MHW+++     +CEC+ +RARLP S                       +YWLFEPRC  H
Sbjct: 436 MHWYQVGDEVSVCECRCSRARLPPSNLWAGAYGCALSLRLYTLDSFVNRYWLFEPRCGMH 495

Query: 347 DIGGWYIETLFRRWQRGSKHAGASPDWAGKHLGLLHPAMYIFGIAYKTLDTEFIRRRERS 168
           DIGGW +                            HPAMY+  +AY+TLD E  RRR+R+
Sbjct: 496 DIGGWRV----------------------------HPAMYLLALAYRTLDLEDARRRKRT 527

Query: 167 L 165
           +
Sbjct: 528 V 528


>tr|A8IZL9|A8IZL9_CHLRE Predicted protein (Fragment) OS=Chlamydomonas
            reinhardtii GN=CHLREDRAFT_148209 PE=4 SV=1
          Length = 1035

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 35/100 (35%), Positives = 48/100 (48%)
 Frame = -2

Query: 458  MHWFKIDGRRMLCECKSTRARLPSSKYWLFEPRCEKHDIGGWYIETLFRRWQRGSKHAGA 279
            +H+F    +R+   C+  RARL  S  WLF PR   HDIGGWY+E     W       G 
Sbjct: 920  LHFFDATTKRLRLLCRCVRARLLPSPTWLFPPREPTHDIGGWYVE-----W-------GG 967

Query: 278  SPDWAGKHLGLLHPAMYIFGIAYKTLDTEFIRRRERSLLG 159
              +     +G L P++Y+F  A    + E +    R LLG
Sbjct: 968  YANRGNPLVGWLDPSVYVFVAALVAAEQERVADSRRRLLG 1007


>tr|A5PDK9|A5PDK9_9SPHN Transketolase OS=Erythrobacter sp. SD-21
           GN=ED21_29236 PE=4 SV=1
          Length = 659

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
 Frame = -2

Query: 308 WQRGSKHAGASPDW---------AGKHLGLLHPAMYIFGIAYKTL-DTEFIRRRERSLLG 159
           W    KH  A+PDW         AG    L++  +++ G A+ T+ D    R+ E    G
Sbjct: 45  WTEYLKHDAAAPDWADRDRFVLSAGHGSMLIYSLLHLSGYAHPTMEDIRNFRQLESPCAG 104

Query: 158 WPPDFICDG 132
            P +F+ DG
Sbjct: 105 HPENFLLDG 113


>tr|A7HEC6|A7HEC6_ANADF Putative uncharacterized protein
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_2872
           PE=4 SV=1
          Length = 151

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 265 AQSGDAPACFDPLCHLRKSVSMYQPPMSCFSQRGSKSQYLLD 390
           A  G APAC   LC  R +V  Y+P +S   +R   + +LLD
Sbjct: 51  AADGAAPACVGDLCQPRVAVPGYEPKLSIRGKRTELAAHLLD 92