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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916078
Clone id YMU001_000082_G08
Library
Length 405
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGATGACAAGGGTGTGGATGCAAACACCATCTTCTCTGCGGTGCCGGCTTTCTTCCCCAA
TGCGCCTCCACCGCCAGAGCCATGGAGGCCATAGAGGAGCTGTAATGGTAGAGATGTTTG
TAAGGAATGTAAGCATGAGATGACAAACAGGGAATGTGTGTGTATGTAAATGGATGTTGT
TGCCACACAGAGAGGGAACGGAAGTCGACACAAGCACATTTTGGACAGGTTTTGTGTGAT
AGTACTATGATGACACTAGGATTATCTCTGGTTATGTGGAATCATGGGAAAGGAGGGAAC
CTTCCTTGTGGTGTGGAATATAGCTGAAGTGTGAGATGAACTTGAAAGAACCTCTTTCCA
TTTTAGCTTGTTTTACTCACATGTATGATGTGCATATAGATGGTG
■■Homology search results ■■ -
sp_hit_id Q6UXV3
Definition sp|Q6UXV3|YV010_HUMAN Uncharacterized protein UNQ6126/PRO20091 OS=Homo sapiens
Align length 50
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916078|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G08.
         (405 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6UXV3|YV010_HUMAN Uncharacterized protein UNQ6126/PRO20091 O...    30   4.8  
sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xeno...    29   6.3  
sp|Q6H8R9|PACC_USTMA pH-response transcription factor pacC/RIM10...    29   6.3  
sp|P35028|KADA_SULAC Adenylate kinase OS=Sulfolobus acidocaldari...    29   6.3  

>sp|Q6UXV3|YV010_HUMAN Uncharacterized protein UNQ6126/PRO20091
           OS=Homo sapiens GN=UNQ6126/PRO20091 PE=2 SV=1
          Length = 157

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 327 SAIFHTTRKVPSFPMIPHNQR*S*CHHSTITQNLSKMCLCRLPFPLCVAT 178
           SA   ++ +VP F  +PH+      HH        +  LC+LP PLC+++
Sbjct: 61  SAAEASSEEVPDFMEVPHS-----VHHKINCFFYLEKQLCQLPSPLCLSS 105


>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus
           laevis GN=rnf128 PE=2 SV=2
          Length = 404

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 245 VLSHKTCPKCACVDFRSLSVWQ-QHPFTYTHIPCLSS 138
           +L H+TCP C C   +SL + + +   T   IP +SS
Sbjct: 291 LLEHRTCPMCKCDILKSLGIAEDEEEGTSVAIPSVSS 327


>sp|Q6H8R9|PACC_USTMA pH-response transcription factor pacC/RIM101
           OS=Ustilago maydis GN=PACC PE=3 SV=2
          Length = 791

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -2

Query: 143 SSHAYIPYKHLYHY-----SSSMASMALAVEAHWGRKPAPQRRWCLHPH 12
           S++  +P    YHY     S+S++ M+  ++   G  PAP      HPH
Sbjct: 221 SAYPSLPPTSDYHYAHSTPSASLSPMSSRIDTPQGSSPAPNHHQHQHPH 269


>sp|P35028|KADA_SULAC Adenylate kinase OS=Sulfolobus acidocaldarius
           GN=adkA PE=1 SV=2
          Length = 194

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 359 GKRFFQVHLTLQLYSTPQGRFPPFP*FHITRDNPSVIIVL 240
           G  F   H  ++   TP G  P  P + IT  NPSVI +L
Sbjct: 86  GYLFIDTHAVIR---TPSGYLPGLPSYVITEINPSVIFLL 122
tr_hit_id B4W4C2
Definition tr|B4W4C2|B4W4C2_9CYAN (NiFe) hydrogenase maturation protein HypF OS=Microcoleus chthonoplastes PCC 7420
Align length 119
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916078|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G08.
         (405 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4W4C2|B4W4C2_9CYAN (NiFe) hydrogenase maturation protein Hyp...    37   0.65 
tr|A0YJ28|A0YJ28_9CYAN Hydrogenase maturation protein OS=Lyngbya...    36   0.85 
tr|B4JMV5|B4JMV5_DROGR GH24261 OS=Drosophila grimshawi GN=GH2426...    34   4.2  
tr|A4HLF0|A4HLF0_LEIBR Putative uncharacterized protein OS=Leish...    33   5.5  
tr|Q8YYZ7|Q8YYZ7_ANASP Hydrogenase maturation protein OS=Anabaen...    33   5.5  
tr|B2J5X8|B2J5X8_NOSP7 (NiFe) hydrogenase maturation protein Hyp...    33   7.2  
tr|Q962C9|Q962C9_PODCA Transcription factor Cnox4-Pc OS=Podocory...    33   7.2  
tr|A5DPY7|A5DPY7_PICGU Putative uncharacterized protein OS=Pichi...    33   9.4  

>tr|B4W4C2|B4W4C2_9CYAN (NiFe) hydrogenase maturation protein HypF
           OS=Microcoleus chthonoplastes PCC 7420 GN=MC7420_8185
           PE=4 SV=1
          Length = 847

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
 Frame = -2

Query: 356 KRFFQVHLTLQLYSTPQGRFPPFP*FHITRDNPSVIIVLSHKTCPKCACVDFRSLSVWQQ 177
           + F    +T  + ST Q + PP                    TCP+C    F S S W  
Sbjct: 90  RTFHDFTITQSVNSTVQTQIPP-----------------DAATCPQCQAETFDSRSRWYN 132

Query: 176 HPFT-YTHI-PCLSSHAYIPYKHLYHYSSSMASMALAVEAHWGRKPAPQRRWCLHPHPC 6
           +PFT  TH  P LS    IPY   +   +SMA  A+  +          RR+   P  C
Sbjct: 133 YPFTNCTHCGPRLSIIRSIPYDRKH---TSMADFAMCPDCAREYLAIENRRFHAQPIAC 188


>tr|A0YJ28|A0YJ28_9CYAN Hydrogenase maturation protein OS=Lyngbya
           sp. PCC 8106 GN=L8106_01902 PE=4 SV=1
          Length = 796

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -2

Query: 230 TCPKCACVDFRSLSVWQQHPFT-YTHI-PCLSSHAYIPYKHLYHYSSSMASMALAVEAHW 57
           TCP C    F  LS + ++PFT  TH  P LS    +PY      ++SMA   L +E   
Sbjct: 112 TCPACKQDIFDPLSRFYRYPFTNCTHCGPRLSIIKKLPYD---RENTSMAGFELCIECQQ 168

Query: 56  GRKPAPQRRWCLHPHPCH 3
             +    RR+   P  CH
Sbjct: 169 NYEDPLNRRFHAQPVACH 186


>tr|B4JMV5|B4JMV5_DROGR GH24261 OS=Drosophila grimshawi GN=GH24261
           PE=4 SV=1
          Length = 769

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = -2

Query: 197 SLSVWQQHPFTYTHIPCLSSHAYIPYKHLYHYSSSMASMALAVEAHWGRKPAPQRRWCLH 18
           +L V QQ P  +  +P   +H ++ + H +H +++ ASMA AV A   R       +  H
Sbjct: 99  TLIVPQQKPHQFHQLPHPLAH-HVHHHHHHHNAAAAASMAAAVAAA-ARHHLLANGFAPH 156

Query: 17  PHPCH 3
           PHP H
Sbjct: 157 PHPHH 161


>tr|A4HLF0|A4HLF0_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM33_V2.1150 PE=4 SV=1
          Length = 1999

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 384 TCE*NKLKWKEVLSSSSHTSAIFHTTRKVPSFPMIPH--NQR*S*CHHSTITQNLSKMCL 211
           +CE +K + + +LSS+ H     HTT K  + P  PH      +    +T++ + S++  
Sbjct: 407 SCESHKERMQRLLSSAMHACRAVHTTSKETATPEHPHRSTSTQTDATSTTVSTSASQVSS 466

Query: 210 CRLPFPLCVATTSI 169
              P P  + T+S+
Sbjct: 467 SGTPMPSLLPTSSL 480


>tr|Q8YYZ7|Q8YYZ7_ANASP Hydrogenase maturation protein OS=Anabaena
           sp. (strain PCC 7120) GN=hypF PE=4 SV=1
          Length = 785

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 230 TCPKCACVDFRSLSVWQQHPFT-YTHI-PCLSSHAYIPYKHLYHYSSSMASMALAVEAHW 57
           TCP+C    F   S + ++PFT  TH  P LS    IPY      ++SM++  +  E   
Sbjct: 106 TCPECQREIFDPFSRFYRYPFTNCTHCGPRLSIIRAIPYDRC---NTSMSAFVMCPECED 162

Query: 56  GRKPAPQRRWCLHPHPCH 3
                  RR+   P  CH
Sbjct: 163 SYHDVENRRFHAQPVACH 180


>tr|B2J5X8|B2J5X8_NOSP7 (NiFe) hydrogenase maturation protein HypF
           OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
           GN=Npun_R0362 PE=4 SV=1
          Length = 781

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -2

Query: 248 IVLSHKTCPKCACVDFRSLSVWQQHPFT-YTHI-PCLSSHAYIPYKHLYHYSSSMASMAL 75
           IV    TCP+C    F   S + ++PFT  TH  P LS    IPY      ++SM++  +
Sbjct: 100 IVPDAATCPQCQQEIFDPFSRFYRYPFTNCTHCGPRLSIIRAIPYDRC---NTSMSAFVI 156

Query: 74  AVEAHWGRKPAPQRRWCLHPHPCH 3
             E          RR+   P  CH
Sbjct: 157 CPECAKEYHDVENRRFHAQPVACH 180


>tr|Q962C9|Q962C9_PODCA Transcription factor Cnox4-Pc OS=Podocoryne
           carnea PE=2 SV=1
          Length = 356

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 173 PFTYTHIPCLSSHAYIPYKHLYHYSSSMASMALAVEAHWGRKPAPQRRW 27
           P  YTH+P L   A  P+ H  H        A+  +  W + PAP+  W
Sbjct: 136 PEFYTHVPTLHHDASPPHGHFSH--------AMYPQLPWSKSPAPEMWW 176


>tr|A5DPY7|A5DPY7_PICGU Putative uncharacterized protein OS=Pichia
           guilliermondii GN=PGUG_05338 PE=4 SV=2
          Length = 744

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
 Frame = -2

Query: 185 WQQHPFTYTHIPCLSSHAYIPYK-------HLYHY----SSSMASMALAVEAHWGRKPAP 39
           WQ HPFTYT  P  S    +  K        LYHY         S+ +A+E  +G K   
Sbjct: 495 WQSHPFTYTISPENSEEIIMFIKVKDGVTSRLYHYLRTHPGRSTSIRVAIEGSYGEKTPA 554

Query: 38  QR 33
            R
Sbjct: 555 SR 556