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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916079
Clone id YMU001_000082_G09
Library
Length 401
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGCACATGATATACATAATTTATACAAAGTGACCCCTCCAAGACCTAGTGACAACCATTA
CATCAACATCTTGACTTTGCAAACATTGATTACAATCATATGTCCACTCATCACAATGCT
CCTTGATAAGTTTCTCTTGATTTTCCTCATTAACCTCCTCTGGTTTATGGTGTCTATGTC
AATTATTATCACATTAGCTTGAGCCTGGGGCTGGTTTCGTTAGTGTATACTGAGGGTTAG
CTTGTTGGTTATCCTGATTGTATGGCACTACTGACATTCCTCTTTCCTCTCTATGTTTTA
CCCACAGAGAACAATTCAGACCTACCCAATGATTTGGTCCGCCATAGTAAATACATGGCA
TCACTCTTGGTGGTCTTCTCTAATTATTATCTTGATTTCTC
■■Homology search results ■■ -
sp_hit_id Q12263
Definition sp|Q12263|GIN4_YEAST Serine/threonine-protein kinase GIN4 OS=Saccharomyces cerevisiae
Align length 51
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916079|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G09.
         (401 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12263|GIN4_YEAST Serine/threonine-protein kinase GIN4 OS=Sac...    31   2.2  
sp|A4T079|COXX_POLSQ Protoheme IX farnesyltransferase OS=Polynuc...    30   3.7  
sp|Q96BQ3|TRI43_HUMAN Tripartite motif-containing protein 43 OS=...    30   4.9  
sp|Q3Z7P5|SYI_DEHE1 Isoleucyl-tRNA synthetase OS=Dehalococcoides...    30   4.9  
sp|Q9VXG8|ATR_DROME Serine/threonine-protein kinase ATR OS=Droso...    30   4.9  
sp|Q54XI9|Y0124_DICDI Probable inactive serine/threonine-protein...    29   8.3  
sp|Q3ZY20|SYI_DEHSC Isoleucyl-tRNA synthetase OS=Dehalococcoides...    29   8.3  

>sp|Q12263|GIN4_YEAST Serine/threonine-protein kinase GIN4
            OS=Saccharomyces cerevisiae GN=GIN4 PE=1 SV=1
          Length = 1142

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 259  NQDNQQANPQYTLTKPAPGSS*CDNN*HRHHKPEEVNEENQEKLIKEHCDE 107
            +Q+  QA+P+     P  GSS        H + EE NEE +EK  ++H  E
Sbjct: 930  SQEGDQAHPKIKSMIPESGSS-------SHTEKEEENEEKEEKKPEQHKQE 973


>sp|A4T079|COXX_POLSQ Protoheme IX farnesyltransferase
           OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=ctaB
           PE=3 SV=1
          Length = 297

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 157 PLVYGVYVNYYHIS-LSLGLVSLVYTEG*LVGYPDCMALLTFLFPLYVL 300
           P +YG+    Y IS + LGL+ L Y     V Y D +A  TF F +  L
Sbjct: 235 PYIYGMSGIIYLISAIVLGLMFLAYVIALFVSYSDALAKKTFRFSITYL 283


>sp|Q96BQ3|TRI43_HUMAN Tripartite motif-containing protein 43
           OS=Homo sapiens GN=TRIM43 PE=2 SV=1
          Length = 446

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 178 HRHHKPEEVNEENQEKLIKE 119
           H+HH  EE  EE++EKL+K+
Sbjct: 124 HKHHPIEEAAEEHREKLLKQ 143


>sp|Q3Z7P5|SYI_DEHE1 Isoleucyl-tRNA synthetase OS=Dehalococcoides
           ethenogenes (strain 195) GN=ileS PE=3 SV=1
          Length = 1014

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = -2

Query: 139 QEKLI--KEHCDEWTYDCNQC 83
           QEKL   + + DEWTYDC++C
Sbjct: 518 QEKLDIHRPYVDEWTYDCDKC 538


>sp|Q9VXG8|ATR_DROME Serine/threonine-protein kinase ATR OS=Drosophila
            melanogaster GN=mei-41 PE=1 SV=2
          Length = 2517

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 160  EEVNEENQEKLIKEHCDEWTY 98
            ++ +E+NQEKL+K + D+W Y
Sbjct: 1743 QDRDEDNQEKLMKNYFDDWQY 1763


>sp|Q54XI9|Y0124_DICDI Probable inactive serine/threonine-protein
           kinase DDB_G0278909 OS=Dictyostelium discoideum
           GN=DDB_G0278909 PE=4 SV=1
          Length = 1936

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 24/96 (25%), Positives = 39/96 (40%)
 Frame = -2

Query: 340 GPNHWVGLNCSLWVKHREERGMSVVPYNQDNQQANPQYTLTKPAPGSS*CDNN*HRHHKP 161
           G N    LN SL       R    +   ++N Q+    + +     SS  +N+ H HH P
Sbjct: 327 GANMMPKLNSSL------NRSTDFLGKERENHQSTSPSSSSLSISSSSQNNNSNHHHHHP 380

Query: 160 EEVNEENQEKLIKEHCDEWTYDCNQCLQSQDVDVMV 53
           + + +E  E L      +   +   CL S   D++V
Sbjct: 381 KSI-DETPEVLSPFDILQSKVNAENCLSSSQQDLIV 415


>sp|Q3ZY20|SYI_DEHSC Isoleucyl-tRNA synthetase OS=Dehalococcoides
           sp. (strain CBDB1) GN=ileS PE=3 SV=1
          Length = 1014

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 139 QEKLI--KEHCDEWTYDCNQC 83
           QEKL   + + DEWTYDC +C
Sbjct: 518 QEKLDIHRPYADEWTYDCAKC 538
tr_hit_id A2ZU39
Definition tr|A2ZU39|A2ZU39_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 39
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916079|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_G09.
         (401 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2ZU39|A2ZU39_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.1  
tr|Q2KKR3|Q2KKR3_SINCH Schwannoma-associated protein-like protei...    33   9.1  
tr|Q54HT9|Q54HT9_DICDI Putative uncharacterized protein OS=Dicty...    33   9.1  

>tr|A2ZU39|A2ZU39_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002061 PE=4 SV=1
          Length = 371

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 154 VNEENQEKLIKEHCDEWTYDCNQCLQSQDVDVMVVTRSW 38
           +N+  + + ++ HCDE  Y CNQC+    + + V T  W
Sbjct: 156 LNQSAEHQSVEPHCDEIEYLCNQCMSMWVLMMKVCTLIW 194


>tr|Q2KKR3|Q2KKR3_SINCH Schwannoma-associated protein-like protein
           (Fragment) OS=Siniperca chuatsi PE=2 SV=1
          Length = 99

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 289 LYVLPTENNSDLPNDLVRHSKYMASLLVVF 378
           ++++P EN SD+P   V H+KYM +  V +
Sbjct: 68  VFIVPVENQSDIPYSRVNHNKYMVTDKVAY 97


>tr|Q54HT9|Q54HT9_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0216068 PE=4 SV=1
          Length = 913

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = -2

Query: 253 DNQQANPQYTLTKPAPGSS*CDNN*HRH----HKPEEVNEENQEKLIKEHCDEWTYDCNQ 86
           DNQQ N Q    + +P SS   ++ H H    H P  + + N  KL+ +H +E     + 
Sbjct: 596 DNQQDNQQQQQQQQSPSSSSSSSSSHNHQQQQHHPSHI-KSNTSKLLNDHFNE---SLSL 651

Query: 85  CLQSQDVDVMVVTRS 41
             +SQ  D  + T++
Sbjct: 652 SAKSQHTDYTIGTQN 666