NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916082
Clone id YMU001_000082_H01
Library
Length 358
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTCCAAAATGCTGCCAGACTCTGCTTTCTTCATGGCAAGGGATTCTGCAATTTCTGCTT
GTTTACAAAGCGTGAGAAAGGAAGATGAGTCCAAACAGCCTGGATGCATCAAGATGGCAT
TGGTTGCGTGTCTACATATGTTAACAATTGGACTTTTTTGATCCTTAACTAACACACGAT
CCATCTGCCTATCCCCACCAGGAGCAAATCCCAAAAACGGAGCGTCTTGCATAAACTGTT
CAGTTTCTAACTCTTGAATAACTGTGTCGAGAAGACTTAGGAAGAAAATAAGGCTGCCTG
TCTCTTTCAATGTCTGTAGCACTTCCGCTCTTCCCTCAAAATTGATTGCCCATTGTAA
■■Homology search results ■■ -
sp_hit_id Q5S2C3
Definition sp|Q5S2C3|PIR_ARATH Protein PIR OS=Arabidopsis thaliana
Align length 108
Score (bit) 92.8
E-value 5.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916082|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_H01.
         (343 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5S2C3|PIR_ARATH Protein PIR OS=Arabidopsis thaliana GN=PIR P...    93   5e-19
sp|Q6UK63|PIRA_DICDI Protein pirA OS=Dictyostelium discoideum GN...    46   5e-05
sp|Q10339|EXO70_SCHPO Exocyst complex component exo70 OS=Schizos...    32   1.3  
sp|Q9H400|LIME1_HUMAN Lck-interacting transmembrane adapter 1 OS...    30   4.9  
sp|Q21LG1|RL19_SACD2 50S ribosomal protein L19 OS=Saccharophagus...    29   8.3  
sp|Q7NSG9|PYRG_CHRVO CTP synthase OS=Chromobacterium violaceum G...    29   8.3  

>sp|Q5S2C3|PIR_ARATH Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1
            SV=1
          Length = 1283

 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 47/108 (43%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
 Frame = -1

Query: 343  LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTV-IQELETEQFMQDAPFLGFAPGGDRQM 167
            L W    E ++EVL+ +KE GS+I+ + LLD V +  ++T++FMQ AP+LG  PG + Q+
Sbjct: 988  LNWGTKSELKSEVLRGIKEIGSVIYTMGLLDIVLVSPVDTKRFMQTAPWLGLIPGAEGQI 1047

Query: 166  DRVLVKDQKSPIVNICRHATNAILMHPGCLDSSSFLTLCKQAEIAESL 23
              V  +D +SP+VN+ + AT+A++  PGCL+ ++F T+ KQAE A+ L
Sbjct: 1048 --VNAQDGESPLVNLLKSATSAVVSSPGCLNPAAFYTMSKQAEAADLL 1093


>sp|Q6UK63|PIRA_DICDI Protein pirA OS=Dictyostelium discoideum GN=pirA
            PE=1 SV=1
          Length = 1336

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 21/44 (47%), Positives = 30/44 (68%)
 Frame = -1

Query: 316  RAEVLQTLKETGSLIFFLSLLDTVIQELETEQFMQDAPFLGFAP 185
            R EVLQT +E G+ + F++LLD VI + ++  F + APFLG  P
Sbjct: 984  RPEVLQTFRELGNSLVFMNLLDQVITQTDSYNFAKAAPFLGITP 1027


>sp|Q10339|EXO70_SCHPO Exocyst complex component exo70
           OS=Schizosaccharomyces pombe GN=exo70 PE=1 SV=1
          Length = 615

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -1

Query: 265 LSLLDTVI---QELETEQFMQDAPFLGFAPGGDRQMDRVLV 152
           LSL+D ++   Q +      +DA FLGF  G  R+M+++L+
Sbjct: 313 LSLIDCIVVTRQNMNNLMPFEDASFLGFVNGVGREMEKILI 353


>sp|Q9H400|LIME1_HUMAN Lck-interacting transmembrane adapter 1
           OS=Homo sapiens GN=LIME1 PE=1 SV=1
          Length = 295

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +1

Query: 64  RKMSPNSLDASRWHWLRVYIC*QLDFFDP*LTHDPSAYPHQE 189
           R + P S+D  R HWL V      D   P     PSA+PHQE
Sbjct: 89  RALRPASMDLLRPHWLEV----SRDITGP--QAAPSAFPHQE 124


>sp|Q21LG1|RL19_SACD2 50S ribosomal protein L19 OS=Saccharophagus
           degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rplS
           PE=3 SV=1
          Length = 118

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -1

Query: 265 LSLLDTVIQELETEQFMQDAPFLGFAPGGDRQMDRVLVKD 146
           +S  + +IQELE EQ  QD P   F+P GD  + +V VK+
Sbjct: 1   MSSKNKIIQELEAEQLKQDVP--EFSP-GDTVVVQVKVKE 37


>sp|Q7NSG9|PYRG_CHRVO CTP synthase OS=Chromobacterium violaceum
           GN=pyrG PE=3 SV=1
          Length = 546

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 172 QMDRVLVKDQKSPIVNICRHATNAILMHPGCLDSSS 65
           +MDR L +D+K  I   C    NA++   GC DS S
Sbjct: 210 RMDRELPEDEKRKIALFCNVEENAVI---GCYDSDS 242
tr_hit_id A9RG99
Definition tr|A9RG99|A9RG99_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 114
Score (bit) 105.0
E-value 9.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916082|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_H01.
         (343 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RG99|A9RG99_PHYPA Predicted protein OS=Physcomitrella paten...   105   9e-22
tr|A9U2J4|A9U2J4_PHYPA Predicted protein OS=Physcomitrella paten...    99   8e-20
tr|A7PZ49|A7PZ49_VITVI Chromosome chr4 scaffold_39, whole genome...    95   2e-18
tr|A5BVZ7|A5BVZ7_VITVI Putative uncharacterized protein OS=Vitis...    91   3e-17
tr|Q10RW4|Q10RW4_ORYSJ PIROGI, putative, expressed OS=Oryza sati...    90   5e-17
tr|Q0DV83|Q0DV83_ORYSJ Os03g0143800 protein OS=Oryza sativa subs...    90   5e-17
tr|B8AND0|B8AND0_ORYSI Putative uncharacterized protein OS=Oryza...    90   5e-17
tr|B7ZGK3|B7ZGK3_LOTJA 121F-specific p53 inducible RNA OS=Lotus ...    84   5e-15
tr|A5B0X4|A5B0X4_VITVI Putative uncharacterized protein OS=Vitis...    56   1e-06
tr|B3H6L9|B3H6L9_ARATH Uncharacterized protein At5g18410.3 OS=Ar...    34   4.2  
tr|B3JWI0|B3JWI0_9DELT Beta-Ig-H3/fasciclin OS=Geobacter sp. M21...    33   7.1  
tr|Q05VE3|Q05VE3_9SYNE Arginine decarboxylase OS=Synechococcus s...    33   9.3  

>tr|A9RG99|A9RG99_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_113662 PE=4 SV=1
          Length = 1317

 Score =  105 bits (263), Expect = 9e-22
 Identities = 50/114 (43%), Positives = 77/114 (67%)
 Frame = -1

Query: 343  LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTVIQELETEQFMQDAPFLGFAPGGDRQMD 164
            LQWA+N++GR E+LQ LKE GSLIF++SLLDT ++E ET  FMQ  P+LG  P  D Q+ 
Sbjct: 1006 LQWAVNYDGRPEMLQGLKEIGSLIFWMSLLDTAMRETETVHFMQVVPWLGVVPNKDGQLQ 1065

Query: 163  RVLVKDQKSPIVNICRHATNAILMHPGCLDSSSFLTLCKQAEIAESLAMKKAES 2
            ++L  D  SP+V++ + AT+ +L     ++  +F ++ KQAE+ + L M   ++
Sbjct: 1066 QLLCDDNYSPVVSLFKEATDEVLYSTSRVNGPAFQSMAKQAEVVDILYMNNLQT 1119


>tr|A9U2J4|A9U2J4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_173321 PE=4 SV=1
          Length = 1318

 Score = 99.4 bits (246), Expect = 8e-20
 Identities = 44/114 (38%), Positives = 80/114 (70%)
 Frame = -1

Query: 343  LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTVIQELETEQFMQDAPFLGFAPGGDRQMD 164
            LQW   ++G +++L  LKE GSLIF++SLLDT ++++ET  FMQ  P+LG  P  + Q+ 
Sbjct: 1005 LQWTRTYDGFSDMLLNLKEIGSLIFWMSLLDTAMRQVETVHFMQVVPWLGVVPNKEGQLQ 1064

Query: 163  RVLVKDQKSPIVNICRHATNAILMHPGCLDSSSFLTLCKQAEIAESLAMKKAES 2
            ++L  D  SP+V+I + A++ ++ + GC++ ++F+++ KQA++A+ L M   ++
Sbjct: 1065 QLLADDNFSPLVSIFKQASDEVVSNLGCMNPNAFVSMAKQAQVADILYMNNLQT 1118


>tr|A7PZ49|A7PZ49_VITVI Chromosome chr4 scaffold_39, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00026738001
            PE=4 SV=1
          Length = 990

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 52/110 (47%), Positives = 74/110 (67%), Gaps = 3/110 (2%)
 Frame = -1

Query: 343  LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTVIQELETEQFMQDAPFLGFAPGGDRQMD 164
            L WA   E + EVL+ +KE GS+++++ LLD V++EL+T  FMQ AP+LG  PG D Q  
Sbjct: 697  LNWASKPELKCEVLRGIKEIGSVLYWMGLLDIVLRELDTTHFMQTAPWLGLIPGVDGQ-- 754

Query: 163  RVLVKDQ---KSPIVNICRHATNAILMHPGCLDSSSFLTLCKQAEIAESL 23
              +++ Q    SP+V + + AT AI+ +PGCLD +SF TL KQAE A+ L
Sbjct: 755  --ILQGQDCGDSPVVTLFKSATAAIVSNPGCLDPTSFHTLSKQAEAADLL 802


>tr|A5BVZ7|A5BVZ7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011349 PE=4 SV=1
          Length = 168

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 49/107 (45%), Positives = 72/107 (67%), Gaps = 3/107 (2%)
 Frame = -1

Query: 343 LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTVIQELETEQFMQDAPFLGFAPGGDRQMD 164
           L W    E ++EVL+ +KE GS+++++ LLD V++E++T  FMQ AP+LG  PG D Q  
Sbjct: 64  LNWGSKPELKSEVLRGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGLIPGVDGQ-- 121

Query: 163 RVLVKDQ---KSPIVNICRHATNAILMHPGCLDSSSFLTLCKQAEIA 32
             +++ Q    SP+V + + AT AI+ +PGCLD +SF TL KQAE A
Sbjct: 122 --ILQGQDCGDSPVVTLFKSATAAIVSNPGCLDPTSFHTLSKQAEAA 166


>tr|Q10RW4|Q10RW4_ORYSJ PIROGI, putative, expressed OS=Oryza sativa
            subsp. japonica GN=LOC_Os03g05020 PE=4 SV=1
          Length = 1184

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 46/107 (42%), Positives = 63/107 (58%)
 Frame = -1

Query: 343  LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTVIQELETEQFMQDAPFLGFAPGGDRQMD 164
            L W    E + EVL  LKE GS ++++SLLD V+++++T QFMQ AP+LG  PG D Q+ 
Sbjct: 888  LTWEAKSEVKTEVLHDLKEIGSALYWMSLLDIVLRQIDTTQFMQSAPWLGLIPGNDGQVK 947

Query: 163  RVLVKDQKSPIVNICRHATNAILMHPGCLDSSSFLTLCKQAEIAESL 23
                    +P   +   ATNA+   P C + SSFL + KQAE A  L
Sbjct: 948  HAY--SDNTPFTTLLSAATNAVASSPACPNPSSFLVMAKQAEAASLL 992


>tr|Q0DV83|Q0DV83_ORYSJ Os03g0143800 protein OS=Oryza sativa subsp.
            japonica GN=Os03g0143800 PE=4 SV=1
          Length = 1213

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 46/107 (42%), Positives = 63/107 (58%)
 Frame = -1

Query: 343  LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTVIQELETEQFMQDAPFLGFAPGGDRQMD 164
            L W    E + EVL  LKE GS ++++SLLD V+++++T QFMQ AP+LG  PG D Q+ 
Sbjct: 917  LTWEAKSEVKTEVLHDLKEIGSALYWMSLLDIVLRQIDTTQFMQSAPWLGLIPGNDGQVK 976

Query: 163  RVLVKDQKSPIVNICRHATNAILMHPGCLDSSSFLTLCKQAEIAESL 23
                    +P   +   ATNA+   P C + SSFL + KQAE A  L
Sbjct: 977  HAY--SDNTPFTTLLSAATNAVASSPACPNPSSFLVMAKQAEAASLL 1021


>tr|B8AND0|B8AND0_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_09982 PE=4 SV=1
          Length = 1287

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 46/107 (42%), Positives = 63/107 (58%)
 Frame = -1

Query: 343  LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTVIQELETEQFMQDAPFLGFAPGGDRQMD 164
            L W    E + EVL  LKE GS ++++SLLD V+++++T QFMQ AP+LG  PG D Q+ 
Sbjct: 991  LTWEAKSEVKTEVLHDLKEIGSALYWMSLLDIVLRQIDTTQFMQSAPWLGLIPGNDGQVK 1050

Query: 163  RVLVKDQKSPIVNICRHATNAILMHPGCLDSSSFLTLCKQAEIAESL 23
                    +P   +   ATNA+   P C + SSFL + KQAE A  L
Sbjct: 1051 HAY--SDNTPFTTLLSAATNAVASSPACPNPSSFLVMAKQAEAASLL 1095


>tr|B7ZGK3|B7ZGK3_LOTJA 121F-specific p53 inducible RNA OS=Lotus
            japonicus GN=pir PE=2 SV=1
          Length = 1277

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
 Frame = -1

Query: 343  LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTVIQELETEQFMQDAPFLGFAPGGDRQMD 164
            L W    E +AEVL  +KE GS+++++ LLD V++E +T  FMQ AP+LG  PG D Q  
Sbjct: 983  LNWETKSELKAEVLHGIKEIGSVLYWMGLLDIVMRETDTMNFMQTAPWLGLLPGADGQ-- 1040

Query: 163  RVLVKDQ--KSPIVNICRHATNAILMHPGCLDSSSFLTLCKQAEIAESL 23
             +L       SP+V+I +    A+  +PGC   SSF  + KQAE A+ L
Sbjct: 1041 -ILTSQDGGDSPVVSIFKSTAAAMASYPGCQSPSSFHIMSKQAEAADLL 1088


>tr|A5B0X4|A5B0X4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003334 PE=4 SV=1
          Length = 245

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
 Frame = -1

Query: 241 QELETEQFMQDAPFLGFAPGGDRQMDRVLVKDQK---SPIVNICRHATNAILMHPGCLDS 71
           +E++T  FMQ AP+LG  PG D Q    +++ Q    SP+V + + AT AI+ +PGCLD 
Sbjct: 176 REVDTTHFMQTAPWLGLIPGVDGQ----ILQGQDCGDSPVVTLFKSATAAIVSNPGCLDP 231

Query: 70  SSFLTLCK 47
           +SF TL K
Sbjct: 232 TSFHTLSK 239


>tr|B3H6L9|B3H6L9_ARATH Uncharacterized protein At5g18410.3
            OS=Arabidopsis thaliana GN=At5g18410 PE=4 SV=1
          Length = 1031

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -1

Query: 343  LQWAINFEGRAEVLQTLKETGSLIFFLSLLDTVI 242
            L W    E ++EVL+ +KE GS+I+ + LLD V+
Sbjct: 988  LNWGTKSELKSEVLRGIKEIGSVIYTMGLLDIVL 1021