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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916083
Clone id YMU001_000082_H02
Library
Length 401
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCTGTTCATTGCCCCCCTAATACGGCAGAACAGTACTGCTTTCATATTCAGCGCTCGGA
TATGAAGGATTTCAAGTCGTTTTACAAGTCTTTTGTGGAGAAGTTGAAGCCTCAACAAAA
TGGAAGTGTGGTTTCTAGATAGCATATGCTGTGCAGGTGATTCTTGTTTCACCTGCACTT
ATCTCTCAGCTAAGCTTCGGAAAGGCGGAATATACATGCATACGAGGTGGTTCTGTTGTC
ATTTGACCCTAGCCAAGGCGGGGCTTCTTGCCGAAAGGTGTAAATTTGCAGATAGTTAAG
AAGAGGTCATGGAAGCCTTTAATAGCAATCGCTGTGTAAAATGCCCAGTGTAAGGATGTG
TGTTCTCGAGGGCAAGGTATAGGCCAGATTTGGCATTGAGT
■■Homology search results ■■ -
sp_hit_id Q5A0E2
Definition sp|Q5A0E2|XPOT_CANAL Exportin-T OS=Candida albicans
Align length 25
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916083|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_H02.
         (401 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5A0E2|XPOT_CANAL Exportin-T OS=Candida albicans GN=LOS1 PE=3...    32   0.98 
sp|Q5RA02|XPOT_PONAB Exportin-T OS=Pongo abelii GN=XPOT PE=2 SV=1      30   2.8  
sp|Q9CRT8|XPOT_MOUSE Exportin-T OS=Mus musculus GN=Xpot PE=2 SV=3      30   2.8  
sp|O43592|XPOT_HUMAN Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2      30   2.8  
sp|Q53QZ3|RHG15_HUMAN Rho GTPase-activating protein 15 OS=Homo s...    29   6.3  
sp|P47364|GALE_MYCGE UDP-glucose 4-epimerase OS=Mycoplasma genit...    29   6.3  
sp|Q6C715|XPOT_YARLI Exportin-T OS=Yarrowia lipolytica GN=LOS1 P...    29   8.3  
sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation spec...    29   8.3  

>sp|Q5A0E2|XPOT_CANAL Exportin-T OS=Candida albicans GN=LOS1 PE=3 SV=1
          Length = 1025

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 35   YCFHIQRSDMKDFKSFYKSFVEKLK 109
            +C ++   D+KDFK ++ SF+ K+K
Sbjct: 998  FCLNLHNLDLKDFKKYFISFINKMK 1022


>sp|Q5RA02|XPOT_PONAB Exportin-T OS=Pongo abelii GN=XPOT PE=2 SV=1
          Length = 962

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 17   PNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKP 112
            P   +++C  +Q+ D K FK++ K F ++ KP
Sbjct: 931  PEIIQEFCQALQQPDAKVFKNYLKVFFQRAKP 962


>sp|Q9CRT8|XPOT_MOUSE Exportin-T OS=Mus musculus GN=Xpot PE=2 SV=3
          Length = 963

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 17   PNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKP 112
            P   +++C  +Q+ D K FK++ K F ++ KP
Sbjct: 932  PEIIQEFCQALQQPDAKVFKNYLKVFFQRAKP 963


>sp|O43592|XPOT_HUMAN Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2
          Length = 962

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 17   PNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKP 112
            P   +++C  +Q+ D K FK++ K F ++ KP
Sbjct: 931  PEIIQEFCQALQQPDAKVFKNYLKVFFQRAKP 962


>sp|Q53QZ3|RHG15_HUMAN Rho GTPase-activating protein 15 OS=Homo
           sapiens GN=ARHGAP15 PE=1 SV=2
          Length = 475

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 11  CPPNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKPQQNGSVVSR*H 145
           CP    E   F IQRS   +  S Y S +++ KP+   S++ R H
Sbjct: 197 CPSRNLE--LFKIQRSSSTELLSHYDSDIKEQKPEHRKSLMFRLH 239


>sp|P47364|GALE_MYCGE UDP-glucose 4-epimerase OS=Mycoplasma
           genitalium GN=galE PE=3 SV=1
          Length = 340

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 256 RRGFLPKGVNLQIVKKRSWKPLIAIA 333
           ++ F P  +NL+I  KRSW P I +A
Sbjct: 279 KKVFYPSRLNLEIRPKRSWDPAILVA 304


>sp|Q6C715|XPOT_YARLI Exportin-T OS=Yarrowia lipolytica GN=LOS1 PE=3
            SV=1
          Length = 1025

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 14   PPNTAEQYCFHIQRSDMKDFKSFYKSFVEKL 106
            P N A+ Y   ++  + KDFK ++ +FV +L
Sbjct: 993  PDNAAKDYVEKLKTLENKDFKKYFSAFVNEL 1023


>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation
           specificity factor subunit 1 OS=Oryza sativa subsp.
           japonica GN=Os04g0252200 PE=3 SV=2
          Length = 1441

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 103 VEASTKWKCGF*IAYAVQVILVSPALISQLSFGKAEYTCIRGGSVV 240
           ++A    +CG  +AY +Q+I++  A +     G+ E TC    + V
Sbjct: 188 IKADPLGRCGAALAYGLQMIILKAAQVGHSLVGEDEPTCALSSTAV 233
tr_hit_id A9SRJ5
Definition tr|A9SRJ5|A9SRJ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 72.4
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916083|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_H02.
         (401 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SRJ5|A9SRJ5_PHYPA Predicted protein OS=Physcomitrella paten...    72   1e-11
tr|A7P6H8|A7P6H8_VITVI Chromosome chr9 scaffold_7, whole genome ...    59   9e-08
tr|A5CBF7|A5CBF7_VITVI Putative uncharacterized protein OS=Vitis...    59   9e-08
tr|Q8H3A7|Q8H3A7_ORYSJ Os07g0613300 protein OS=Oryza sativa subs...    58   2e-07
tr|Q7XAC4|Q7XAC4_ARATH PAUSED OS=Arabidopsis thaliana PE=2 SV=1        51   3e-05
tr|Q7PC79|Q7PC79_ARATH Exportin-t OS=Arabidopsis thaliana GN=PAU...    51   3e-05
tr|B7R4A5|B7R4A5_9EURY Ion channel family protein OS=Thermococcu...    33   5.4  

>tr|A9SRJ5|A9SRJ5_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_134096 PE=4 SV=1
          Length = 1001

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 2/48 (4%)
 Frame = +2

Query: 2    AVHCPPNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKP--QQNGSVVSR 139
            AVHCPPN AEQ+C HIQRSD+K+ K  YKSF+EKL+P  QQNG   SR
Sbjct: 954  AVHCPPNLAEQFCLHIQRSDVKELKPLYKSFIEKLRPQQQQNGHAWSR 1001


>tr|A7P6H8|A7P6H8_VITVI Chromosome chr9 scaffold_7, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00034073001
            PE=4 SV=1
          Length = 992

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = +2

Query: 2    AVHCPPNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKPQQNGSVVSR 139
            A HCP + AE+YC  +Q SD+K  KSFY+S +E L+ QQNGS+V R
Sbjct: 947  AAHCPQDLAEEYCQKLQGSDIKALKSFYQSLIESLRHQQNGSLVFR 992


>tr|A5CBF7|A5CBF7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042408 PE=4 SV=1
          Length = 251

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = +2

Query: 2   AVHCPPNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKPQQNGSVVSR 139
           A HCP + AE+YC  +Q SD+K  KSFY+S +E L+ QQNGS+V R
Sbjct: 206 AAHCPQDLAEEYCQKLQGSDIKALKSFYQSLIESLRHQQNGSLVFR 251


>tr|Q8H3A7|Q8H3A7_ORYSJ Os07g0613300 protein OS=Oryza sativa subsp.
            japonica GN=P0616D06.103 PE=2 SV=1
          Length = 980

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = +2

Query: 8    HCPPNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKPQQNGSVVSR 139
            HCPP+ AEQY   +Q +D+K FKSFY+S V K++ QQNGS+V R
Sbjct: 937  HCPPDLAEQYYQKLQGNDIKAFKSFYESLVMKIRQQQNGSLVFR 980


>tr|Q7XAC4|Q7XAC4_ARATH PAUSED OS=Arabidopsis thaliana PE=2 SV=1
          Length = 988

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = +2

Query: 2    AVHCPPNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKPQQNGSVVSR 139
            + H P + AEQYC  +Q +D++  KS+Y+S +E L+ QQNGS V R
Sbjct: 943  SAHIPQDLAEQYCQKLQGNDIRSLKSYYQSLIENLRLQQNGSHVFR 988


>tr|Q7PC79|Q7PC79_ARATH Exportin-t OS=Arabidopsis thaliana GN=PAUSED
            PE=4 SV=1
          Length = 988

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = +2

Query: 2    AVHCPPNTAEQYCFHIQRSDMKDFKSFYKSFVEKLKPQQNGSVVSR 139
            + H P + AEQYC  +Q +D++  KS+Y+S +E L+ QQNGS V R
Sbjct: 943  SAHIPQDLAEQYCQKLQGNDIRSLKSYYQSLIENLRLQQNGSHVFR 988


>tr|B7R4A5|B7R4A5_9EURY Ion channel family protein OS=Thermococcus
           sp. AM4 GN=TAM4_1205 PE=4 SV=1
          Length = 702

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +2

Query: 8   HCPPNTAEQ-YC-FHIQRSDMKDFKSFYKSFVEKLKP-----QQNGSVVSR 139
           +C P TA+Q YC FH      ++   FY+ F+E+ KP     + NG  V R
Sbjct: 9   NCDPETADQEYCIFHKPNKSEEEAVEFYRKFLERFKPRVEEIEVNGKKVKR 59