BP916089
Clone id YMU001_000082_H10
Library
Length 272
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000082_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATACACACTAACTACTTCCTCTTTCTCAAAGGATGGCCACTTCTGCGGGTGTGTCGATTG
GCAATAGCCATCTAACCCTCGCAGTGCGTTGCTTGGAATCCACACTTTTCACAATGCCAG
CCCGTCTGCCAACTTCGATAATCAAGGCCATCCAGATCAGAACCTTTTTCCATCACATGT
TGCTCTAGCCAAAAAGTCGCGGTCGACCCATATGATCAACAGGAAATAATGAACATGTGT
CTACACCTGTCTCTCTGGTCCCATCTTGCCAT
■■Homology search results ■■ -
sp_hit_id Q9ZVX1
Definition sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana
Align length 82
Score (bit) 39.7
E-value 0.0003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916089|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_H10.
(272 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin carrier protein E2 23 O... 40 3e-04
sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 2... 36 0.053
sp|Q8TGE1|AWA1_YEAST Cell wall protein AWA1 OS=Saccharomyces cer... 31 2.2
sp|P47179|DAN4_YEAST Cell wall protein DAN4 OS=Saccharomyces cer... 29 6.4

>sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin carrier protein E2 23
OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1
Length = 1102

Score = 39.7 bits (91), Expect(2) = 3e-04
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALIIEVG----------RR 122
WQDGT E + +L P++ G + ++E RR
Sbjct: 462 WQDGTIECRREAITLIPIETPGDHEF------------VSEQYVVEKTSDDGDNTTEPRR 509

Query: 121 AGIVKSVDSKQRTARVRWLLPI 56
AG+VK+V++K RTA VRWL P+
Sbjct: 510 AGVVKNVNAKDRTASVRWLNPL 531



Score = 23.1 bits (48), Expect(2) = 3e-04
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3

Query: 30 FEKEEVVSVY 1
FEKEE+VSVY
Sbjct: 540 FEKEEIVSVY 549


>sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 24
OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1
Length = 907

Score = 36.2 bits (82), Expect = 0.053
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALIIEVGRRAGIVKSVDSK 92
WQDG+ GVD+ L PV + W + + ++ G+VK+V++K
Sbjct: 309 WQDGSCSLGVDSQQLLPVGAVNAHDF-------WPEQFVVEKETCN-SKKWGVVKAVNAK 360

Query: 91 QRTARVRWLLPIDTPA 44
++T +V+W + ++ A
Sbjct: 361 EQTVKVQWTIQVEKEA 376


>sp|Q8TGE1|AWA1_YEAST Cell wall protein AWA1 OS=Saccharomyces
cerevisiae GN=AWA1 PE=1 SV=1
Length = 1713

Score = 30.8 bits (68), Expect = 2.2
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3

Query: 18 PLSQRMATSAGVSIGNSHLTLAVRCLESTLFTMPARLPTSI--IKAIQIRTFFHHMLL*P 191
PLS AT++ SI ++ +T++ + S++ T + +P+SI + + I + L
Sbjct: 314 PLSSSKATTSAESISSNQITISSELIVSSVITSSSEIPSSIEVLTSSGISSSVEPTSLVG 373

Query: 192 KSRGRPI*STGNNEHVSTPVSL 257
S I ST + STP+++
Sbjct: 374 PSSDESISSTESLSATSTPLAV 395


>sp|P47179|DAN4_YEAST Cell wall protein DAN4 OS=Saccharomyces
cerevisiae GN=DAN4 PE=2 SV=1
Length = 1161

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3

Query: 18 PLSQRMATSAGVSIGNSHLTLAVRCLESTLFTMPARLPTSI 140
PLS AT++ SI ++ +T++ + S++ T + +P+SI
Sbjct: 559 PLSFSKATTSAESISSNQITISSELIVSSVITSSSEIPSSI 599


tr_hit_id A9SVT6
Definition tr|A9SVT6|A9SVT6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 88
Score (bit) 62.0
E-value 1.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916089|Adiantum capillus-veneris mRNA, clone:
YMU001_000082_H10.
(272 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SVT6|A9SVT6_PHYPA Predicted protein (Fragment) OS=Physcomit... 62 1e-08
tr|A7P8D5|A7P8D5_VITVI Chromosome chr3 scaffold_8, whole genome ... 46 2e-04
tr|Q6I601|Q6I601_ORYSJ Putative uncharacterized protein OJ1214_E... 44 0.003
tr|Q0DG18|Q0DG18_ORYSJ Os05g0557700 protein OS=Oryza sativa subs... 44 0.003
tr|B8AWH8|B8AWH8_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.003
tr|B7F902|B7F902_ORYSJ cDNA, clone: J065202E18, full insert sequ... 44 0.003
tr|B8AY59|B8AY59_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.009
tr|B4NLG0|B4NLG0_DROWI GK14098 OS=Drosophila willistoni GN=GK140... 41 0.026
tr|Q65XP5|Q65XP5_ORYSJ Putative ubiquitin-conjugating enzyme OS=... 41 0.034
tr|A3B031|A3B031_ORYSJ Putative uncharacterized protein OS=Oryza... 41 0.034
tr|Q9AWU5|Q9AWU5_ORYSJ P0044F08.17 protein OS=Oryza sativa subsp... 40 0.044
tr|Q5ZCB9|Q5ZCB9_ORYSJ Ubiquitin-conjugating enzyme-like (Os01g0... 40 0.044
tr|A2ZNS8|A2ZNS8_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.044
tr|A2WK64|A2WK64_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.044
tr|B2L1Z0|B2L1Z0_NICBE PHO2 OS=Nicotiana benthamiana PE=2 SV=1 40 0.057
tr|A9SIU9|A9SIU9_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.22
tr|B4LYI1|B4LYI1_DROVI GJ24478 OS=Drosophila virilis GN=GJ24478 ... 38 0.22
tr|Q9XZ32|Q9XZ32_DROME CG10254, isoform A OS=Drosophila melanoga... 37 0.37
tr|B4PNV7|B4PNV7_DROYA GE23936 OS=Drosophila yakuba GN=GE23936 P... 37 0.48
tr|B3P8G2|B3P8G2_DROER GG12418 OS=Drosophila erecta GN=GG12418 P... 37 0.48
tr|B4K890|B4K890_DROMO GI24834 OS=Drosophila mojavensis GN=GI248... 37 0.63
tr|B4JTN2|B4JTN2_DROGR GH13926 OS=Drosophila grimshawi GN=GH1392... 36 0.83
tr|A7R7R4|A7R7R4_VITVI Chromosome undetermined scaffold_1973, wh... 35 1.8
tr|A7R4U2|A7R4U2_VITVI Chromosome undetermined scaffold_777, who... 35 1.8
tr|B4R227|B4R227_DROSI GD18366 OS=Drosophila simulans GN=GD18366... 35 1.8
tr|B4HFW4|B4HFW4_DROSE GM23551 OS=Drosophila sechellia GN=GM2355... 35 1.8
tr|B3LY68|B3LY68_DROAN GF18750 OS=Drosophila ananassae GN=GF1875... 34 3.1
tr|A7RKM3|A7RKM3_NEMVE Predicted protein OS=Nematostella vectens... 34 3.1
tr|B5DYA1|B5DYA1_DROPS GA26813 OS=Drosophila pseudoobscura pseud... 33 9.1
tr|B4GP90|B4GP90_DROPE GL13836 OS=Drosophila persimilis GN=GL138... 33 9.1

>tr|A9SVT6|A9SVT6_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_40312 PE=3 SV=1
Length = 950

Score = 62.0 bits (149), Expect = 1e-08
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALIIEVG----------RR 122
WQDG++ + VD+CSL P++H+G W + ++E G RR
Sbjct: 339 WQDGSKSSKVDSCSLVPIEHVGDHDF-------WPE-----QYVLEQGPDGDDLDNEVRR 386

Query: 121 AGIVKSVDSKQRTARVRWLLPIDTPAEV 38
GI+KSVD+KQRTA VRWL P+ P E+
Sbjct: 387 VGILKSVDAKQRTAVVRWLKPVARPEEL 414


>tr|A7P8D5|A7P8D5_VITVI Chromosome chr3 scaffold_8, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00036139001
PE=3 SV=1
Length = 967

Score = 46.2 bits (108), Expect(2) = 2e-04
Identities = 30/72 (41%), Positives = 40/72 (55%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALIIEVGRRAGIVKSVDSK 92
WQDGT G+ + +L P+D G F +K EV RR G+VKSV++K
Sbjct: 351 WQDGTTARGLPSTTLIPIDSPG-DHEFVSEQYVVEKASDESDDASEV-RRVGVVKSVNAK 408

Query: 91 QRTARVRWLLPI 56
+RTA VRWL P+
Sbjct: 409 ERTACVRWLKPV 420



Score = 21.2 bits (43), Expect(2) = 2e-04
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -3

Query: 30 FEKEEVVSVY 1
F++EEVVSVY
Sbjct: 429 FDREEVVSVY 438


>tr|Q6I601|Q6I601_ORYSJ Putative uncharacterized protein
OJ1214_E03.18 (Putative uncharacterized protein)
OS=Oryza sativa subsp. japonica GN=OJ1214_E03.18 PE=3
SV=1
Length = 993

Score = 44.3 bits (103), Expect = 0.003
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALIIEVG---RRAGIVKSV 101
WQDG+ G++ SL PV +G W I L +E +R GIV SV
Sbjct: 425 WQDGSTSLGLEPQSLVPVSTLGDHDF-------WPGQFILEKLTVEDNGRCQRTGIVTSV 477

Query: 100 DSKQRTARVRWLLPIDT 50
D+ +RT +V+W + +D+
Sbjct: 478 DALERTVKVKWAVSVDS 494


>tr|Q0DG18|Q0DG18_ORYSJ Os05g0557700 protein OS=Oryza sativa subsp.
japonica GN=Os05g0557700 PE=3 SV=1
Length = 1029

Score = 44.3 bits (103), Expect = 0.003
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALIIEVG---RRAGIVKSV 101
WQDG+ G++ SL PV +G W I L +E +R GIV SV
Sbjct: 461 WQDGSTSLGLEPQSLVPVSTLGDHDF-------WPGQFILEKLTVEDNGRCQRTGIVTSV 513

Query: 100 DSKQRTARVRWLLPIDT 50
D+ +RT +V+W + +D+
Sbjct: 514 DALERTVKVKWAVSVDS 530


>tr|B8AWH8|B8AWH8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_20940 PE=4 SV=1
Length = 876

Score = 44.3 bits (103), Expect = 0.003
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALIIEVG---RRAGIVKSV 101
WQDG+ G++ SL PV +G W I L +E +R GIV SV
Sbjct: 308 WQDGSTSLGLEPQSLVPVSTLGDHDF-------WPGQFILEKLTVEDNGRCQRTGIVTSV 360

Query: 100 DSKQRTARVRWLLPIDT 50
D+ +RT +V+W + +D+
Sbjct: 361 DALERTVKVKWAVSVDS 377


>tr|B7F902|B7F902_ORYSJ cDNA, clone: J065202E18, full insert
sequence OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 876

Score = 44.3 bits (103), Expect = 0.003
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALIIEVG---RRAGIVKSV 101
WQDG+ G++ SL PV +G W I L +E +R GIV SV
Sbjct: 308 WQDGSTSLGLEPQSLVPVSTLGDHDF-------WPGQFILEKLTVEDNGRCQRTGIVTSV 360

Query: 100 DSKQRTARVRWLLPIDT 50
D+ +RT +V+W + +D+
Sbjct: 361 DALERTVKVKWAVSVDS 377


>tr|B8AY59|B8AY59_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_18498 PE=4 SV=1
Length = 582

Score = 42.7 bits (99), Expect = 0.009
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALI---IEVGRRAGIVKSV 101
WQDGT GV + L P D + F ++ V+ MA RR G+V+SV
Sbjct: 392 WQDGTLRRGVPSLELVPFDILNDHEFFPGQHV----VVDTMAAAEATTAAARRVGVVRSV 447

Query: 100 DSKQRTARVRWL 65
D K +T RV WL
Sbjct: 448 DPKDQTVRVSWL 459


>tr|B4NLG0|B4NLG0_DROWI GK14098 OS=Drosophila willistoni GN=GK14098
PE=4 SV=1
Length = 1448

Score = 41.2 bits (95), Expect = 0.026
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALIIEVGRR-AGIVKSVDS 95
WQDGT ETG+ + L+P+ H+ F + A + G+ G+++SV
Sbjct: 582 WQDGTVETGIHSTQLYPIHHLDNHEFF-------PGDFVSNANVNGTGQTDYGVIQSVHH 634

Query: 94 KQRTARVRW 68
+RTA+V+W
Sbjct: 635 DERTAKVKW 643


>tr|Q65XP5|Q65XP5_ORYSJ Putative ubiquitin-conjugating enzyme
OS=Oryza sativa subsp. japonica GN=OSJNBa0072C16.16 PE=3
SV=1
Length = 1045

Score = 40.8 bits (94), Expect = 0.034
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALI---IEVGRRAGIVKSV 101
WQDGT GV + L P D + F ++ V+ MA RR G+V+ V
Sbjct: 385 WQDGTLRRGVPSLELVPFDILNDHEFFPGQHV----VVDTMAAAEATTAAARRVGVVRRV 440

Query: 100 DSKQRTARVRWL 65
D K +T RV WL
Sbjct: 441 DPKDQTVRVSWL 452


>tr|A3B031|A3B031_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_016403 PE=3 SV=1
Length = 1632

Score = 40.8 bits (94), Expect = 0.034
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -2

Query: 271 WQDGTRETGVDTCSLFPVDHMGRPRLFG*SNM*WKKVLIWMALI---IEVGRRAGIVKSV 101
WQDGT GV + L P D + F ++ V+ MA RR G+V+ V
Sbjct: 385 WQDGTLRRGVPSLELVPFDILNDHEFFPGQHV----VVDTMAAAEATTAAARRVGVVRRV 440

Query: 100 DSKQRTARVRWL 65
D K +T RV WL
Sbjct: 441 DPKDQTVRVSWL 452