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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916090
Clone id YMU001_000083_A02
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGAAGAATTCGCGGCCGCAGGAATTGTTTTTTTTCGCCTTACAGTGGTCTCCTACTTT
GTTCATGTGCATAGAGTTGACAAGTTTAGTCCATATCTCCTAATTTCACAATTCCTCTTG
GTTTGTTTGGGTTAATACTTTTAAGCCCATCTTTTCCATAGTGTTTTGAAGATCTCCCCG
TAGGTGTGGTTGTATCTTCAGTAGGTCACCCAATGTGATTGTGCATTGGATTGGAGTTGA
CATAATGGATTGTGAATTCACTGCATCCAAGGTTTGTTTTGGTCTAATTTAATTTCGTCG
TTTTGCAAACCATTGATTTCTCTTCATTCTCGCCTAGTATAAAGGTAGTGTTTGCAACAT
GCCACCTTTTGTTAAGCCTGACTGCTCTAATCCCCAATCTCCATATAAGGAATGTTCATC
TAATTCCA
■■Homology search results ■■ -
sp_hit_id O65677
Definition sp|O65677|KCS2_ARATH Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana
Align length 36
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916090|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_A02.
         (392 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O65677|KCS2_ARATH Probable 3-ketoacyl-CoA synthase 2 OS=Arabi...    33   0.58 
sp|P35510|PAL1_ARATH Phenylalanine ammonia-lyase 1 OS=Arabidopsi...    30   3.8  
sp|P45724|PAL2_ARATH Phenylalanine ammonia-lyase 2 OS=Arabidopsi...    29   6.4  
sp|Q5M8I4|TSSC1_XENTR Protein TSSC1 OS=Xenopus tropicalis GN=tss...    29   8.4  
sp|Q3KPT3|TSSC1_XENLA Protein TSSC1 OS=Xenopus laevis GN=tssc1 P...    29   8.4  
sp|Q55BQ3|SCY2_DICDI Probable inactive serine/threonine-protein ...    29   8.4  
sp|A3DD79|RNH_CLOTH Ribonuclease H OS=Clostridium thermocellum (...    29   8.4  
sp|Q9Y8J2|RL1_METVO 50S ribosomal protein L1P OS=Methanococcus v...    29   8.4  
sp|Q04913|NR4A1_XENLA Nuclear receptor subfamily 4 group A membe...    29   8.4  

>sp|O65677|KCS2_ARATH Probable 3-ketoacyl-CoA synthase 2
           OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1
          Length = 487

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +2

Query: 23  LFMCIELTSLVHIS*FHNSSWFVWVNTFKPIFSIVF 130
           LFM + L SL H+  ++NS+ F++V T   + SIVF
Sbjct: 39  LFMNVSLLSLNHLQLYYNSTGFIFVITLAIVGSIVF 74


>sp|P35510|PAL1_ARATH Phenylalanine ammonia-lyase 1 OS=Arabidopsis
           thaliana GN=PAL1 PE=1 SV=3
          Length = 725

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 252 IRPKQTLDAVNSQSIMSTPIQCTITLG-DLLKIQPHLRGDLQNTMEKMGLKVLTQTNQEE 76
           I  ++T +AV+   +MST     I    DL  ++ +LR  ++NT+ ++  KVLT     E
Sbjct: 505 ISSRKTSEAVDILKLMSTTFLVAICQAVDLRHLEENLRQTVKNTVSQVAKKVLTTGVNGE 564

Query: 75  L 73
           L
Sbjct: 565 L 565


>sp|P45724|PAL2_ARATH Phenylalanine ammonia-lyase 2 OS=Arabidopsis
           thaliana GN=PAL2 PE=1 SV=2
          Length = 717

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 252 IRPKQTLDAVNSQSIMSTPIQCTITLG-DLLKIQPHLRGDLQNTMEKMGLKVLTQTNQEE 76
           I  ++T +AV+   +MST     I    DL  ++ +LR  ++NT+ ++  KVLT     E
Sbjct: 497 ISSRKTSEAVDILKLMSTTFLVGICQAVDLRHLEENLRQTVKNTVSQVAKKVLTTGINGE 556

Query: 75  L 73
           L
Sbjct: 557 L 557


>sp|Q5M8I4|TSSC1_XENTR Protein TSSC1 OS=Xenopus tropicalis GN=tssc1
           PE=2 SV=1
          Length = 387

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 221 IHNPLCQLQSNAQSHWVTY*RYNHTYGEIFKT 126
           IH P+  L+ +  SHWV   RYNH++ ++  T
Sbjct: 261 IHEPVKTLEEH--SHWVWSVRYNHSHDQLVLT 290


>sp|Q3KPT3|TSSC1_XENLA Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2
           SV=1
          Length = 387

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 221 IHNPLCQLQSNAQSHWVTY*RYNHTYGEIFKT 126
           IH P+  L+ +  SHWV   RYNH++ ++  T
Sbjct: 261 IHEPVKTLEEH--SHWVWSVRYNHSHDQLVLT 290


>sp|Q55BQ3|SCY2_DICDI Probable inactive serine/threonine-protein
           kinase scy2 OS=Dictyostelium discoideum GN=scy2 PE=3
           SV=1
          Length = 1125

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = -3

Query: 234 LDAVNSQSIMSTPIQ-----CTITLGDLLKIQPHLRGDLQNTMEKMGLK-VLTQT 88
           ++ V  QS M+T        CTI LGD     P LRGDL+N +     + VLT+T
Sbjct: 306 IEQVRRQSTMNTQRSDSAKVCTILLGD-----PMLRGDLENFIRSSFFQDVLTKT 355


>sp|A3DD79|RNH_CLOTH Ribonuclease H OS=Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237) GN=rnhA PE=3 SV=1
          Length = 147

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 228 AVNSQSIMSTPIQCTITLGDLLKIQPHL-RGDLQNTMEKMGLKVLTQTNQEEL*N*EIWT 52
           A+N+  ++  P +      DL     +L  G LQN +EK        +N+EE+ N E+W 
Sbjct: 51  AINALKMLKEPCEV-----DLYSDSAYLVNGFLQNWVEKWKKNGWKTSNKEEVKNMELWQ 105

Query: 51  KLVNSMHMNKV 19
           +L    +++K+
Sbjct: 106 ELDRLSNIHKI 116


>sp|Q9Y8J2|RL1_METVO 50S ribosomal protein L1P OS=Methanococcus
           voltae GN=rpl1p PE=3 SV=1
          Length = 213

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -3

Query: 234 LDAVNSQSIMSTPIQCTITLGDLLKIQPHLRGDLQNTMEKMGLKVLTQTNQEEL 73
           LD    ++ M   I     LG  + I    +GDL    E MGL V+ Q   EEL
Sbjct: 35  LDLSRPENRMKQQIVLPSGLGKEINIAVIAKGDLAAQAESMGLTVIRQEELEEL 88


>sp|Q04913|NR4A1_XENLA Nuclear receptor subfamily 4 group A member 1
           OS=Xenopus laevis GN=nr4a1 PE=2 SV=1
          Length = 577

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 302 YKGSVCNMPPFVKPDCSNPQSPYKECS 382
           Y GS C++P    P   NPQ P  ECS
Sbjct: 108 YYGSPCSIPSPSTPGFQNPQLPTWECS 134
tr_hit_id B4NHQ3
Definition tr|B4NHQ3|B4NHQ3_DROWI GK14234 OS=Drosophila willistoni
Align length 44
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916090|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_A02.
         (392 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4NHQ3|B4NHQ3_DROWI GK14234 OS=Drosophila willistoni GN=GK142...    33   9.3  

>tr|B4NHQ3|B4NHQ3_DROWI GK14234 OS=Drosophila willistoni GN=GK14234
           PE=4 SV=1
          Length = 387

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 216 QSIMSTPIQCTITL--GDLLKIQPHLRGDLQN-TMEKMGLKVLT 94
           Q++ +T   C I L  GDL K+QPHL   LQ   +EK  LK  T
Sbjct: 85  QALAATDSHCLILLQNGDLYKLQPHLEATLQRIQLEKTTLKTNT 128