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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916092
Clone id YMU001_000083_A06
Library
Length 300
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATCATTTGACAGGCCCAATTCCAGAGATTTTCACACACATGAGCTCCAACAACTTTATG
AACAACATGGATTTATGTGGTGCTTCTCTACCAAATGCATGTCCAATACAACAAGTGACA
GAGAGCAGTGGAACGGATGGCACCCATAGTGTTGCCATAGTGCAAACAATTGTTGGTACT
GTAGTGGGAGTGCTTGGTCTCTCGTATGTAGTAATAGTCTTGGCAGCATTTTGTATGTGT
CGCAAGCGGCCATCGCGCGGAGGATTCCATGGATTGAATGAGCTTGAGAAGGAGCGAAGC
■■Homology search results ■■ -
sp_hit_id O22476
Definition sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana
Align length 37
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916092|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_A06.
         (300 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Ar...    34   0.26 
sp|O94356|MEU6_SCHPO Meiotic expression up-regulated protein 6 O...    33   0.34 
sp|Q9FHK7|Y5516_ARATH Probable receptor kinase At5g05160 OS=Arab...    32   0.76 
sp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g2673...    32   0.76 
sp|Q94C77|RPKL_ARATH Receptor protein kinase-like protein At4g34...    32   1.3  
sp|Q66KU1|CLC3A_XENLA C-type lectin domain family 3 member A hom...    31   2.2  
sp|Q13724|GCS1_HUMAN Mannosyl-oligosaccharide glucosidase OS=Hom...    30   2.9  
sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2...    30   3.8  
sp|P18168|SERR_DROME Serrate protein OS=Drosophila melanogaster ...    29   6.5  
sp|Q2YCA1|GLMU_NITMU Bifunctional protein glmU OS=Nitrosospira m...    29   6.5  
sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious...    29   8.4  
sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious ...    29   8.4  
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectio...    29   8.4  
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectiou...    29   8.4  
sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT10...    29   8.4  
sp|Q54SZ6|Y8359_DICDI Putative uncharacterized protein DDB_G0282...    29   8.4  

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1
           OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1
          Length = 1196

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 1   NHLTGPIPEI--FTHMSSNNFMNNMDLCGASLPNACP 105
           N+L+GPIPE+  F       F+NN  LCG  LP   P
Sbjct: 736 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 772


>sp|O94356|MEU6_SCHPO Meiotic expression up-regulated protein 6
           OS=Schizosaccharomyces pombe GN=meu6 PE=2 SV=1
          Length = 651

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 257 RDGRLRHIQNAAKTITTYERPSTPTTVPT 171
           +DGRL+ I   +KT    E P TPTT PT
Sbjct: 573 KDGRLKEISQFSKTTIKPETPLTPTTTPT 601


>sp|Q9FHK7|Y5516_ARATH Probable receptor kinase At5g05160
           OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1
          Length = 640

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACPIQQVTESS 129
           N+L+GPIPE        +F+ N  LCG  L NAC    ++ SS
Sbjct: 204 NNLSGPIPEHLKKSPEYSFIGNSLLCGPPL-NACSGGAISPSS 245


>sp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g26730
           OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1
          Length = 658

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASL 90
           N+L G IP   +  S+ +F  N+DLCG  L
Sbjct: 194 NNLNGSIPSSLSRFSAESFTGNVDLCGGPL 223


>sp|Q94C77|RPKL_ARATH Receptor protein kinase-like protein At4g34220
           OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1
          Length = 757

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 1   NHLTGPIPEIFT--HMSSNNFMNNMDLCGASLPNACPI 108
           N+LTGPIP   +  +  + +F  N +LCG  L   C I
Sbjct: 254 NNLTGPIPSSLSLLNQKAESFSGNQELCGKPLKILCSI 291


>sp|Q66KU1|CLC3A_XENLA C-type lectin domain family 3 member A
           homolog OS=Xenopus laevis GN=clec3a PE=2 SV=1
          Length = 193

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 288 LKLIQSMESSARWPLATHTKCCQDYYYIRETKHSHYSTNNCLHYGNTMGAIRST 127
           LK +Q++++        H KC   Y    ETKH H +  +C+  G T+   R +
Sbjct: 56  LKEMQALQTVCLRGTKIHKKC---YLSFEETKHFHEANEDCIAKGGTLAIPRDS 106


>sp|Q13724|GCS1_HUMAN Mannosyl-oligosaccharide glucosidase OS=Homo
           sapiens GN=GCS1 PE=1 SV=5
          Length = 837

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
 Frame = -3

Query: 289 SQAHSIHGILRAMAACDTYKMLPRLLLHTRDQALPLQYQQLFALWQHY--------GCHP 134
           ++A  +HG LRA    + ++                QYQ    LW+ Y        GC P
Sbjct: 778 ARAAKLHGELRANVVGNVWR----------------QYQATGFLWEQYSDRDGRGMGCRP 821

Query: 133 FHCSLSLVVLDM 98
           FH   SLV+L M
Sbjct: 822 FHGWTSLVLLAM 833


>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2
           OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1
          Length = 1143

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 1   NHLTGPIPE--IFTHMSSNNFMNNMDLCGASLP 93
           N LTGPIP+    + + +  + NN  LCG  LP
Sbjct: 693 NELTGPIPQRGQLSTLPATQYANNPGLCGVPLP 725


>sp|P18168|SERR_DROME Serrate protein OS=Drosophila melanogaster
           GN=Ser PE=1 SV=3
          Length = 1404

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 141 HP*CCHSANNCWYCSGSAWSLVCSNSLGSIL 233
           +P C H +     C+GSAW  VC  + G IL
Sbjct: 318 YPGCKHGS-----CNGSAWKCVCDTNWGGIL 343


>sp|Q2YCA1|GLMU_NITMU Bifunctional protein glmU OS=Nitrosospira
           multiformis (strain ATCC 25196 / NCIMB 11849) GN=glmU
           PE=3 SV=2
          Length = 460

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 182 TVPTIVCTMATLWVPSVPLLSVTCCIGHAFGREAPHKSMLFIKLLELMCVKISGIGPVK 6
           TVP  +   + +WVP +P L      GHA  +  PH     I L+    V ++ +  +K
Sbjct: 59  TVPQTIADESLIWVPQIPQLGT----GHAVMQALPHIEKEGITLILYGDVPLTSVETLK 113
tr_hit_id A9TI45
Definition tr|A9TI45|A9TI45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 39.3
E-value 0.098
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916092|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_A06.
         (300 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TI45|A9TI45_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.098
tr|A7PD42|A7PD42_VITVI Chromosome chr17 scaffold_12, whole genom...    39   0.098
tr|A7PMD4|A7PMD4_VITVI Chromosome chr14 scaffold_21, whole genom...    39   0.13 
tr|A9RKR8|A9RKR8_PHYPA CLL1A clavata1-like receptor S/T protein ...    39   0.17 
tr|Q53JL7|Q53JL7_ORYSJ Protein kinase domain containing protein,...    38   0.22 
tr|Q0ITI9|Q0ITI9_ORYSJ Os11g0249900 protein (Fragment) OS=Oryza ...    38   0.22 
tr|A5ATC1|A5ATC1_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|A3CA80|A3CA80_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|A2ZD38|A2ZD38_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.22 
tr|B6N439|B6N439_BRAFL Putative uncharacterized protein OS=Branc...    38   0.22 
tr|A7Q588|A7Q588_VITVI Chromosome undetermined scaffold_52, whol...    38   0.28 
tr|A5AMN3|A5AMN3_VITVI Putative uncharacterized protein OS=Vitis...    38   0.28 
tr|B6PBR1|B6PBR1_BRAFL Putative uncharacterized protein (Fragmen...    38   0.28 
tr|Q0JH05|Q0JH05_ORYSJ cDNA, clone: J065203A13, full insert sequ...    37   0.37 
tr|B8LM41|B8LM41_PICSI Putative uncharacterized protein OS=Picea...    37   0.37 
tr|A2WXU9|A2WXU9_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.37 
tr|A5BX58|A5BX58_VITVI Putative uncharacterized protein OS=Vitis...    37   0.48 
tr|Q9SCT4|Q9SCT4_ARATH Putative uncharacterized protein T18N14.1...    37   0.63 
tr|A7Q591|A7Q591_VITVI Chromosome undetermined scaffold_52, whol...    37   0.63 
tr|A7Q324|A7Q324_VITVI Chromosome chr12 scaffold_47, whole genom...    37   0.63 
tr|A5BYA4|A5BYA4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.63 
tr|A5BBW5|A5BBW5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.63 
tr|Q80GW5|Q80GW5_HBV Polymerase OS=Hepatitis B virus PE=4 SV=1         36   0.83 
tr|Q8VZC5|Q8VZC5_ARATH AT4g37250/C7A10_110 OS=Arabidopsis thalia...    36   0.83 
tr|O23161|O23161_ARATH Receptor kinase-like protein OS=Arabidops...    36   0.83 
tr|A7Q322|A7Q322_VITVI Chromosome chr12 scaffold_47, whole genom...    36   0.83 
tr|Q6YT77|Q6YT77_ORYSJ cDNA, clone: J090052O12, full insert sequ...    36   1.1  
tr|Q0D8K3|Q0D8K3_ORYSJ Os07g0152200 protein OS=Oryza sativa subs...    36   1.1  
tr|A7PFC8|A7PFC8_VITVI Chromosome chr11 scaffold_14, whole genom...    36   1.1  
tr|A5BX69|A5BX69_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  

>tr|A9TI45|A9TI45_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222521 PE=4 SV=1
          Length = 658

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACPI---QQVTESSG 132
           N+L+G +P + +    ++F+ N  LCG  LP+ CP    Q  T S+G
Sbjct: 179 NNLSGAVPALLSRFPVDSFVGNAGLCGPPLPSLCPFSSGQSATSSNG 225


>tr|A7PD42|A7PD42_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016131001
           PE=4 SV=1
          Length = 628

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACPIQQVTESSGTDGTHS 150
           N+ +GPIP++    S+++F  N  LCG  L N CP   +   +G+ G  S
Sbjct: 200 NNFSGPIPDVDGRFSASSFSGNPGLCGPPLSNTCP-PSLPSKNGSKGFSS 248


>tr|A7PMD4|A7PMD4_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020776001
           PE=4 SV=1
          Length = 596

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACP 105
           N   GPIP++    + ++F+ N  LCG  LPN CP
Sbjct: 204 NLFRGPIPDVEDRFNESSFLGNPGLCGDPLPNKCP 238


>tr|A9RKR8|A9RKR8_PHYPA CLL1A clavata1-like receptor S/T protein
           kinase protein OS=Physcomitrella patens subsp. patens
           GN=CLL1A PE=4 SV=1
          Length = 1017

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACP 105
           N+L+GPIP +F   ++  F  N  LCGA LP ACP
Sbjct: 590 NNLSGPIP-LFDSYNATAFEGNPGLCGALLPRACP 623


>tr|Q53JL7|Q53JL7_ORYSJ Protein kinase domain containing protein,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g14420 PE=4 SV=1
          Length = 606

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 22/45 (48%), Positives = 25/45 (55%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACPIQQVTESSGT 135
           N L+GPIP  F   +S+NF  N DLCG  L N C     T SS T
Sbjct: 179 NQLSGPIPSSFGKFASSNFA-NQDLCGRPLSNDC---TATSSSRT 219


>tr|Q0ITI9|Q0ITI9_ORYSJ Os11g0249900 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os11g0249900 PE=4 SV=1
          Length = 501

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 22/45 (48%), Positives = 25/45 (55%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACPIQQVTESSGT 135
           N L+GPIP  F   +S+NF  N DLCG  L N C     T SS T
Sbjct: 74  NQLSGPIPSSFGKFASSNFA-NQDLCGRPLSNDC---TATSSSRT 114


>tr|A5ATC1|A5ATC1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043284 PE=4 SV=1
          Length = 1090

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACP 105
           N   GPIP++      ++F+ N  LCG  LPN CP
Sbjct: 204 NLFRGPIPDVEDRFXESSFLGNPGLCGDPLPNKCP 238


>tr|A3CA80|A3CA80_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032202 PE=4 SV=1
          Length = 634

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 22/45 (48%), Positives = 25/45 (55%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACPIQQVTESSGT 135
           N L+GPIP  F   +S+NF  N DLCG  L N C     T SS T
Sbjct: 207 NQLSGPIPSSFGKFASSNFA-NQDLCGRPLSNDC---TATSSSRT 247


>tr|A2ZD38|A2ZD38_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35701 PE=4 SV=1
          Length = 525

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 22/45 (48%), Positives = 25/45 (55%)
 Frame = +1

Query: 1   NHLTGPIPEIFTHMSSNNFMNNMDLCGASLPNACPIQQVTESSGT 135
           N L+GPIP  F   +S+NF  N DLCG  L N C     T SS T
Sbjct: 98  NQLSGPIPSSFGKFASSNFA-NQDLCGRPLSNDC---TATSSSRT 138


>tr|B6N439|B6N439_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_125874 PE=4 SV=1
          Length = 1009

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
 Frame = -3

Query: 247  ACDTYKMLPRLLLHTRDQALPLQYQQLFALWQHY--------GCHPFHCSLSLVVLDM 98
            A DTYK L R L+H     L ++Y++   +W++Y        GCHPF    SL+VL M
Sbjct: 952  AADTYKELRRSLIHN----LYVEYERSGFIWENYSDVNGHGKGCHPFTGWSSLIVLIM 1005