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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916095
Clone id YMU001_000083_A10
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTCGCGGCCGCGAATTCTTCCAGTTCTCTCTTCCTCGTCCTCGGACTTAAGCTTGAGA
AGAGGAGAGCAAGGAGCCAAAAAGCAAGGAAAAGGCGTGCAATTCAGGGGATTCTCTCTC
TACAAGTAGCTTTGAAAGACGCTCGATCGAGCAAAGCAGGTCAATCAAAGAGAGTCTCGA
GAGCTCTTGACAACATCGAAAGAAAAACTTGAGGCTTATTGTTGGTAACCAAAGCAATAG
AAGAAGCATAAGAGCAGGCTAAGGAAGGCACTCGAAGAAGCAAGGGATAAAGCTTCGAAT
AGCAATTGAAGAGCAGGAGGGAGTTAAAGTGCAGACCATGAGGAAGTTAAAGTGCAGAGT
ATAAAGAGCAGGATAATCGATAATAATTGAGGCTTGATGATTGAGGCAGTGAACTGACTT
GAAGCTTGCAGAATCTAATGGAACTTGAAGCAGACAAAGCAACAAGAGATAATTACCATC
ATCATCATTAACTCGAGG
■■Homology search results ■■ -
sp_hit_id A5DEK6
Definition sp|A5DEK6|JIP5_PICGU WD repeat-containing protein JIP5 OS=Pichia guilliermondii
Align length 78
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916095|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_A10.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5DEK6|JIP5_PICGU WD repeat-containing protein JIP5 OS=Pichia...    32   1.8  
sp|Q84BK9|LCBA1_AERHY Capsular polysaccharide phosphotransferase...    31   2.4  
sp|Q9SHJ3|CALS7_ARATH Callose synthase 7 OS=Arabidopsis thaliana...    30   4.1  
sp|Q9LYS6|CALS6_ARATH Putative callose synthase 6 OS=Arabidopsis...    30   4.1  
sp|Q8C0M0|WDR59_MOUSE WD repeat-containing protein 59 OS=Mus mus...    30   5.4  
sp|Q6PJI9|WDR59_HUMAN WD repeat-containing protein 59 OS=Homo sa...    30   5.4  

>sp|A5DEK6|JIP5_PICGU WD repeat-containing protein JIP5 OS=Pichia
           guilliermondii GN=JIP5 PE=3 SV=2
          Length = 490

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +2

Query: 74  NSGDSLSTSSFERRSIEQSRSIKESLESS*QHRKKNLRLIVGNQSNRR--SIRAG*GRHS 247
           N  +S  + S +   +E S   KE  E S +   KN+    G Q+N+R  S     G + 
Sbjct: 408 NGSNSEESDSNDEDEVESSDDEKEKEEESTETDHKNIEAESGKQANKRQASQPKSAGENV 467

Query: 248 KKQGIKLRIAIEEQEGVK 301
           KKQ +K    +    G++
Sbjct: 468 KKQKLKQTSKLAHSHGIR 485


>sp|Q84BK9|LCBA1_AERHY Capsular polysaccharide phosphotransferase
           lcbA OS=Aeromonas hydrophila GN=lcbA PE=3 SV=1
          Length = 360

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 414 PLDSASFKSVHCLNHQASIIIDYPALYT 331
           P  SAS KS   LNH  S +ID+P ++T
Sbjct: 219 PTLSASLKSASLLNHDFSFLIDHPLVHT 246


>sp|Q9SHJ3|CALS7_ARATH Callose synthase 7 OS=Arabidopsis thaliana
            GN=CALS7 PE=2 SV=2
          Length = 1933

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 280  NCYSKLYPLLLRVPSLACSYASSIALVTNNKPQ-VFLSMLSRALETL 143
            +CY+ +  L+L+ PSL  +Y        N K Q VF S+L +  + L
Sbjct: 1236 SCYNNILQLMLKYPSLRVAYIDEREETVNGKSQKVFYSVLLKGCDKL 1282


>sp|Q9LYS6|CALS6_ARATH Putative callose synthase 6 OS=Arabidopsis
            thaliana GN=CALS6 PE=3 SV=2
          Length = 1921

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 355  YRLSCSLYSAL*LPHGLHFNSLLLFNCYSKLYPLLLRVPSLACSYASSIALVTNNK-PQV 179
            Y +SC +Y        +H  S     CY+ +  L+L+ PSL  +Y        + K P+V
Sbjct: 1204 YVVSCQVYGNQKKSGDIHNRS-----CYTNILQLMLKYPSLRVAYVDEREETADAKSPKV 1258

Query: 178  FLSML 164
            F S+L
Sbjct: 1259 FYSVL 1263


>sp|Q8C0M0|WDR59_MOUSE WD repeat-containing protein 59 OS=Mus
           musculus GN=Wdr59 PE=1 SV=2
          Length = 992

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -1

Query: 408 DSASFKSVHCLNHQASIIIDYPALYTLH----FNFLMVCTLT 295
           D +   SVHC NH+  +++ +PA Y  +    F F+   T+T
Sbjct: 413 DRSCTVSVHCSNHRVKMLVTFPAQYPNNAAPSFQFINPTTIT 454


>sp|Q6PJI9|WDR59_HUMAN WD repeat-containing protein 59 OS=Homo
           sapiens GN=WDR59 PE=1 SV=2
          Length = 974

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -1

Query: 408 DSASFKSVHCLNHQASIIIDYPALYTLH----FNFLMVCTLT 295
           D +   SVHC NH+  +++ +PA Y  +    F F+   T+T
Sbjct: 413 DRSCTVSVHCSNHRVKMLVKFPAQYPNNAAPSFQFINPTTIT 454
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916095|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_A10.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******