NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916098
Clone id YMU001_000083_B02
Library
Length 317
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTTTGCGTTCGTTCCAACTTCAGCTCAAGTTCAATGTCCTTGTTTCTCTTTTCTAAAGT
CTTGTAGACTTCATATGTTCCCTTGATTGAGGCTACAGTTGGGTTTTCTCTTATCTGTCT
TAGAAATGCTGCTTGATCATTGATCCACTGCTTGGAGTACTACAAAGAGGCCTCAGCTAC
ATCAAGATGCACTTGGATCTTTTGTACTGACATGGTAGTGGTTAAAAGTTTGTTGGTTAC
TTCTGTCAGTTGTTGATCTTTGCTTTTGCATGCATCGGATAACTTTGTCTTAGGAGCTCT
CCTAGCTCTTCCATCTC
■■Homology search results ■■ -
sp_hit_id P10849
Definition sp|P10849|NAM1_YEAST Protein NAM1, mitochondrial OS=Saccharomyces cerevisiae
Align length 85
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916098|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_B02.
         (317 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10849|NAM1_YEAST Protein NAM1, mitochondrial OS=Saccharomyce...    31   1.7  
sp|Q6B9X6|VWKA_DICDI Alpha-protein kinase vwkA OS=Dictyostelium ...    31   2.2  
sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing pr...    31   2.2  
sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3      30   2.8  
sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing pr...    30   4.8  
sp|Q3UH06|RREB1_MOUSE RAS-responsive element-binding protein 1 O...    29   8.3  
sp|Q16HE8|NKD_AEDAE Protein naked cuticle homolog OS=Aedes aegyp...    29   8.3  

>sp|P10849|NAM1_YEAST Protein NAM1, mitochondrial OS=Saccharomyces
           cerevisiae GN=NAM1 PE=1 SV=1
          Length = 440

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/85 (24%), Positives = 41/85 (48%)
 Frame = -3

Query: 267 KSKDQQLTEVTNKLLTTTMSVQKIQVHLDVAEASL*YSKQWINDQAAFLRQIRENPTVAS 88
           K  ++ + E+ NK+   T   Q ++ H+D       Y ++ +      LR ++++     
Sbjct: 192 KFSEEVMQEIGNKIRYQTTLDQVLEPHID-------YLREAVKSDYDLLRYLKQS----- 239

Query: 87  IKGTYEVYKTLEKRNKDIELELKLE 13
                ++YK   KRNKD+EL++  E
Sbjct: 240 ----LDIYK---KRNKDLELKMNAE 257


>sp|Q6B9X6|VWKA_DICDI Alpha-protein kinase vwkA OS=Dictyostelium
           discoideum GN=vwkA PE=1 SV=1
          Length = 625

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
 Frame = -3

Query: 291 KTKLSDACKSKDQQLTEVTNKLLTTTMSVQKIQVHL--DVAEASL*Y--SKQWINDQAAF 124
           KTK S      D  +  ++N L  T++  +K+   L  D + + L    SK  I+D++A 
Sbjct: 14  KTKPSGRVNVSD--MDSISNSLSKTSLGTRKVPTSLKTDASRSGLSSGGSKTHISDESAL 71

Query: 123 L-------RQIRENPTVASIKGTYEVYKTLEKRNKDIELELKLER 10
                   R  +   T  SI    E  K +EKRN++I+L  K  R
Sbjct: 72  RMVYGSTPRDEKTTTTKDSITLAKEKEKKIEKRNEEIKLTFKAIR 116


>sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing
           protein 4 OS=Mus musculus GN=Tmtc4 PE=2 SV=1
          Length = 741

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 156 SKQWINDQAAFLRQIRENPTVASIKGT----YEVYKTLEKRNKDIELELKLE 13
           S+++   +A FL+ I+ NP VAS  G     Y  +  L+   K  E+ L+L+
Sbjct: 665 SQKYKESEALFLKAIKANPNVASYHGNLAVLYHRWGHLDSAKKHYEISLQLD 716


>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
          Length = 2871

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = -3

Query: 315  DGRARRAPKTKLSDACKSKDQQLTEVTNKLLTTTMSVQKIQVHLDVAEAS---L*YSKQW 145
            D    RA    L+   +S  +++  + N L  TT ++++++  +   +A+   +   KQ 
Sbjct: 1387 DTSGYRAQIDNLTRENRSLSEEIKRLKNTLTQTTENLRRVEEDIQQQKATGSEVSQRKQQ 1446

Query: 144  INDQAAFLRQIRENPTVASIKGTYEVYKTLEKRNKDIE 31
            +  +   + Q+R   +V   +   +  KT++ +NK+IE
Sbjct: 1447 LEVELRQVTQMRTEESVRYKQSLDDAAKTIQDKNKEIE 1484


>sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing
           protein 4 OS=Homo sapiens GN=TMTC4 PE=1 SV=2
          Length = 741

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -3

Query: 156 SKQWINDQAAFLRQIRENPTVASIKGT----YEVYKTLEKRNKDIELELKLERT 7
           S+++   +A FL+ I+ NP  AS  G     Y  +  L+   K  E+ L+L+ T
Sbjct: 665 SQKYKESEALFLKAIKANPNAASYHGNLAVLYHRWGHLDLAKKHYEISLQLDPT 718


>sp|Q3UH06|RREB1_MOUSE RAS-responsive element-binding protein 1 OS=Mus
            musculus GN=Rreb1 PE=1 SV=2
          Length = 1700

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 145  DQ*SSSISKTDKRKPNCSLNQGNI*SLQDFRKEKQGH 35
            D   S  SK DKRK  CS+      SLQD  +  + H
Sbjct: 1506 DSPKSMASKADKRKKVCSVCNKRFWSLQDLTRHMRSH 1542


>sp|Q16HE8|NKD_AEDAE Protein naked cuticle homolog OS=Aedes aegypti
           GN=nkd PE=3 SV=1
          Length = 715

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 24/102 (23%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
 Frame = -3

Query: 306 ARRAPKTKLSDACKSKDQQLTEVTNK------LLTTTMSVQKIQVHLDVAEASL*YSKQW 145
           A ++P+   +   +SK ++  E+T+K      +LTT + +  +++  D+AE S+   K+ 
Sbjct: 511 AEKSPRVAAAKLKRSKSKE--EITHKSTKFENVLTTDLLLDNLKITEDIAELSVVTPKKI 568

Query: 144 INDQ----AAFLRQIRENPTVASIKGTYEVY-KTLEKRNKDI 34
            N +    +A  + IR + T  ++  T  V    ++K +K++
Sbjct: 569 FNKECLISSATKKNIRTHHTTKTVSTTTAVVPPAVDKASKNL 610
tr_hit_id Q9U0S6
Definition tr|Q9U0S6|Q9U0S6_MYTGA Pedal retractor muscle myosin heavy chain (Fragment) OS=Mytilus galloprovincialis
Align length 104
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916098|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_B02.
         (317 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9U0S6|Q9U0S6_MYTGA Pedal retractor muscle myosin heavy chain...    36   0.84 
tr|A0DIT2|A0DIT2_PARTE Chromosome undetermined scaffold_52, whol...    35   2.4  
tr|Q7T835|Q7T835_9CORO Replicase polyprotein 1ab OS=Infectious b...    33   5.4  
tr|Q7T834|Q7T834_9CORO Replicase polyprotein 1a OS=Infectious br...    33   5.4  
tr|A8SLZ4|A8SLZ4_9FIRM Putative uncharacterized protein OS=Parvi...    33   5.4  
tr|A2FK27|A2FK27_TRIVA Viral A-type inclusion protein, putative ...    33   5.4  
tr|A6R8P4|A6R8P4_AJECN Putative uncharacterized protein OS=Ajell...    33   7.1  

>tr|Q9U0S6|Q9U0S6_MYTGA Pedal retractor muscle myosin heavy chain
            (Fragment) OS=Mytilus galloprovincialis GN=prm MHC PE=2
            SV=1
          Length = 1708

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = -3

Query: 315  DGRARRA--PKTKLSDACKSKDQQLTEVTNKLLTTTMSVQKIQVHLDVAEASL*YSKQWI 142
            D RA+RA    T+LSD  +++ +  +++     T  ++++++ V +D AEAS        
Sbjct: 1514 DDRAKRAVMDTTRLSDELRAEQEHSSQIEKMRKTLEITIKELHVRVDEAEAS-------- 1565

Query: 141  NDQAAFLRQIRENPTVASIKGTYEVYKTLEKRNKDIELELKLER 10
                              +KG  +V   LE+R +D+E EL  E+
Sbjct: 1566 -----------------GVKGGRKVIAKLEQRVQDLESELDNEQ 1592


>tr|A0DIT2|A0DIT2_PARTE Chromosome undetermined scaffold_52, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00017306001 PE=4 SV=1
          Length = 341

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -3

Query: 285 KLSDACKSKDQQLTEVTNKLLTTTMSVQKIQVHLDVAEASL*YSKQWINDQAAFLRQIRE 106
           KL    K KD+QL ++TNK+       QK++  + VA       KQ I  Q A ++Q ++
Sbjct: 238 KLKSIIKEKDEQLIDITNKIQFNVTHYQKLEEQIQVA-------KQNIQKQLASIKQQKQ 290


>tr|Q7T835|Q7T835_9CORO Replicase polyprotein 1ab OS=Infectious
            bronchitis virus PE=4 SV=1
          Length = 6641

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = +3

Query: 174  QLHQDALGSFVLTW*WLKVCWLLLSV------VDLCFCMHRITLS 290
            QL++DA+     TW WL + +L+L V      V +C+C+  + LS
Sbjct: 1840 QLYKDAVNGISFTWNWLYMLFLILFVKPVAGFVIICYCIRYLVLS 1884


>tr|Q7T834|Q7T834_9CORO Replicase polyprotein 1a OS=Infectious
            bronchitis virus PE=4 SV=1
          Length = 3963

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = +3

Query: 174  QLHQDALGSFVLTW*WLKVCWLLLSV------VDLCFCMHRITLS 290
            QL++DA+     TW WL + +L+L V      V +C+C+  + LS
Sbjct: 1840 QLYKDAVNGISFTWNWLYMLFLILFVKPVAGFVIICYCIRYLVLS 1884


>tr|A8SLZ4|A8SLZ4_9FIRM Putative uncharacterized protein
           OS=Parvimonas micra ATCC 33270 GN=PEPMIC_01147 PE=3 SV=1
          Length = 393

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
 Frame = -3

Query: 216 TMSVQKIQVHLDVAEASL*YSKQWINDQAAFLRQIRENPTVASIKGTY------------ 73
           T+ V  + +   +    L Y+K  ++D+  FL++I  +P  A++ G Y            
Sbjct: 107 TLDVPSVSIKNAICNGVLKYNKSLVSDEIKFLKKITTSPVKATLPGPYLMTRSMWLPALS 166

Query: 72  -EVYKTLEKRNKDIELELKLE 13
            + Y + E+  KD+   LK E
Sbjct: 167 KKFYDSKEELGKDVVKILKQE 187


>tr|A2FK27|A2FK27_TRIVA Viral A-type inclusion protein, putative
           OS=Trichomonas vaginalis G3 GN=TVAG_480170 PE=4 SV=1
          Length = 1677

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 26/89 (29%), Positives = 43/89 (48%)
 Frame = -3

Query: 285 KLSDACKSKDQQLTEVTNKLLTTTMSVQKIQVHLDVAEASL*YSKQWINDQAAFLRQIRE 106
           KL+D  KSK  +LTE  NKL++    +Q++    +    S   S Q   +Q   + + +E
Sbjct: 426 KLNDKLKSKINELTETNNKLVSDLSELQQMSKETEEKLKSEIESIQSQLNQTNVMLKEKE 485

Query: 105 NPTVASIKGTYEVYKTLEKRNKDIELELK 19
              +       E+    +KR  DIE++LK
Sbjct: 486 GSQIQFDSQISEI----QKRYNDIEVQLK 510


>tr|A6R8P4|A6R8P4_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_06685 PE=4 SV=1
          Length = 732

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
 Frame = -3

Query: 315 DGRARRAPKTKLSDA-CKSKDQQLTEVTNKLLTTTMSVQKIQVHLDVAEASL*YSKQWIN 139
           D  A R  K  LS A   +++++L  +T K  T   S+ K +  +++    L   K  ++
Sbjct: 465 DPNAPRGTKRPLSPADSDAENERLAVLTRKNRTLQDSLSKAEQSIELRTRELEAVKSHLS 524

Query: 138 DQAAFLR----QIRENPTVASIKGTYEVYKTLEKRNKDIELELKLERT 7
              A  R    ++R NPT  + K        L   N+D+  +L+ ER+
Sbjct: 525 TLQAQSRTRILELRSNPTAEAEKVKLSTLAVLRAENRDLLTQLRNERS 572