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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916110
Clone id YMU001_000083_C06
Library
Length 449
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAGCAAATGCCAGTATTAAAACTAGTCTCTACGATCAGGAAATTACAAAAATGTTCTTGA
TTGCATCAAGTAAGCTGTACATGTAAAAATCCCTTCAAGGATACTATGGATGCATGGAGT
AGTGAATGTGGCTTTCACGCCCTCTCTTACAACAGCCTTTGCTCTCACGAGCTGCCTCAC
TACAGCTGGCTGCGTAGACTGCAAGATTTGCTACTGTTGCATTACACTATGCAGCCACTG
AACTTGTAAGCAAAAAAGTTGAGCTTCTGTGATAGAACTCACTAACGTATAAAGAATCAA
TAATATTATAACATAAAAGTGGAGATACCCTTTATTTTCCAGAACCCTTCAAGTCGCACA
TATATGCATATCGCAATCATCAACAGTGAAAGGGAAAAATGAATGCGTAACAAGGTAGCA
TTCACTACCTAGAATCAATGCTAGTGACT
■■Homology search results ■■ -
sp_hit_id Q9BYQ7
Definition sp|Q9BYQ7|KRA41_HUMAN Keratin-associated protein 4-1 OS=Homo sapiens
Align length 27
Score (bit) 29.6
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916110|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_C06.
         (449 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BYQ7|KRA41_HUMAN Keratin-associated protein 4-1 OS=Homo sap...    30   6.1  
sp|Q9BYR2|KRA45_HUMAN Keratin-associated protein 4-5 OS=Homo sap...    29   8.0  

>sp|Q9BYQ7|KRA41_HUMAN Keratin-associated protein 4-1 OS=Homo
           sapiens GN=KRTAP4-1 PE=2 SV=2
          Length = 127

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 173 CLTTAGCVDCKICYCCITLCSH*TCKQ 253
           C TT  C  C +  CC   CS  TC Q
Sbjct: 30  CQTTCCCPSCVVSSCCRPSCSQTTCCQ 56


>sp|Q9BYR2|KRA45_HUMAN Keratin-associated protein 4-5 OS=Homo
           sapiens GN=KRTAP4-5 PE=2 SV=1
          Length = 186

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 149 TTAFALTSCLTTAGCVDCKICYCCITLCSH*TCKQ 253
           TT    T C TT  C  C +  CC   C    C Q
Sbjct: 88  TTCCRTTCCRTTCCCPSCCVSSCCRPQCCQSVCCQ 122
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916110|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_C06.
         (449 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******