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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916121
Clone id YMU001_000083_D05
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTCTCAAAGTATCACGACCTTCTTCAGAGACTCATAAGACCGTCTTACAAATCGTAACT
GCACCACAATGCCATTTTCACCAACTTGGCCACCAAAAATTACAAAGACTCCTCAAAAAT
CGGACGGCCAACAATTTGTTTCTTGGTTGGCTGTCAGCAACCCCCAAGATATGAAACAGG
AAAAAGAGCCCAATGTCTTCCTTTATTTGAGTGAAGATGGACAATGTGAGCGTCAAAATA
CAACCATCAGTGTACATGATTCCTAGTTATAGCCGGCATCTCTACCCAAAAATACACAGG
CGTGCAACCAGTAGATACATGGACCTCCTCCAGAAAACTCGCTTTCTTCAAAAGCTCTCA
GAACTCTTCAATCTTTGATTGGTTTCTTTGTACCTACCACTAGCCTCTATCCCCAAGGAT
CATCCCAACCTTTTGGGCCTTCTCTCTTTACAAAGTCTATAATTGCATTGACAGCTTCTT
TGACTCGGTTTGATAAGCTGTGATTTCCCCACTCTATCTCGACTTTCTCTGCTCCTCCCA
TAGCCTTGCAAAGCCTTTCTACTAACGCC
■■Homology search results ■■ -
sp_hit_id Q86Y13
Definition sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo sapiens
Align length 59
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916121|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_D05.
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo ...    32   1.7  
sp|Q18CD5|SYC_CLOD6 Cysteinyl-tRNA synthetase OS=Clostridium dif...    31   3.8  
sp|O60100|IMB4_SCHPO Probable importin subunit beta-4 OS=Schizos...    31   4.9  
sp|P54258|ATN1_RAT Atrophin-1 OS=Rattus norvegicus GN=Atn1 PE=2 ...    30   6.4  
sp|O29487|Y771_ARCFU Uncharacterized protein AF_0771 OS=Archaeog...    30   8.4  
sp|Q46TZ4|OPGH_RALEJ Glucans biosynthesis glucosyltransferase H ...    30   8.4  

>sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo
            sapiens GN=DZIP3 PE=1 SV=2
          Length = 1208

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +3

Query: 45   LTNRNCTTMPFSPTWP-----PKITKTPQKSDGQQFVSWLAVSNPQDMKQEKEPNVFLY 206
            ++N NC +   SP+ P     PK    P  S G    +W   SNP + ++E+EP V  +
Sbjct: 1096 VSNVNCVSPSHSPSQPDAAQPPKPAWRPLTSQGP--ATWEGASNPDEEEEEEEPCVICH 1152


>sp|Q18CD5|SYC_CLOD6 Cysteinyl-tRNA synthetase OS=Clostridium
           difficile (strain 630) GN=cysS PE=3 SV=1
          Length = 468

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 541 MGGAEKVEIEWGNH-SLSNRVKEAVNAIIDFVKREGPKGWDDPWG 410
           + G ++ ++E G    ++++ +  ++ ++   K+EG  GWD PWG
Sbjct: 156 LSGQKQEDLEAGARIEVNDQKRHPMDFVLWKAKKEGEPGWDSPWG 200


>sp|O60100|IMB4_SCHPO Probable importin subunit beta-4
           OS=Schizosaccharomyces pombe GN=kap123 PE=2 SV=1
          Length = 1067

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 206 IKEDIGLFFLFHILGVADSQPRNKLLAVRFLRSLCNFWWPS 84
           +KE   L  LFHI+G  ++ P+ + LA    R LC+ +W S
Sbjct: 36  LKEPGSLLSLFHIMGTCEN-PQVRQLAAIEARKLCHKYWSS 75


>sp|P54258|ATN1_RAT Atrophin-1 OS=Rattus norvegicus GN=Atn1 PE=2
           SV=1
          Length = 1183

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +3

Query: 273 PASLPKNTQACNQ*IHGP--PPENSLSSKALRTLQSLIGFFVPTTSLYPQGSSQPFGP-- 440
           PA LP +    +    GP  PP +S S+ +  + Q+      P++S  PQG+S PF P  
Sbjct: 539 PAHLPPSHGQVSYSQAGPNGPPVSSSSNSSGSSSQAAYSCSHPSSSQGPQGASYPFPPVP 598

Query: 441 -----SLFTKSIIALTAS 479
                S    ++IA  AS
Sbjct: 599 PITTSSATLSTVIATVAS 616


>sp|O29487|Y771_ARCFU Uncharacterized protein AF_0771
           OS=Archaeoglobus fulgidus GN=AF_0771 PE=4 SV=1
          Length = 289

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
 Frame = +2

Query: 260 FLVIAGISTQK-----YTGVQPVDTWTSSRKLAF------FKSSQNSSIFDWFLCTYH*P 406
           FL+I  IS  K      TG+  V TW  S K+        FK    + +F + LC++  P
Sbjct: 93  FLLIFFISKSKEIALLLTGLSVVLTWLYSDKIFIGKIIRRFKEDYKTEVFTYILCSFSFP 152

Query: 407 LS 412
           LS
Sbjct: 153 LS 154


>sp|Q46TZ4|OPGH_RALEJ Glucans biosynthesis glucosyltransferase H
           OS=Ralstonia eutropha (strain JMP134) GN=opgH PE=3 SV=1
          Length = 861

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 553 LCKAMGGAEKVEIEWGNHSLSNRVKEAVNAIIDFVKREGPK 431
           +C+A+GG  ++   W  H    RVK     + DF +R G K
Sbjct: 321 VCRAVGGFGRIFYRWRRH----RVKRKTGNVADFCRRWGSK 357
tr_hit_id A7NWF4
Definition tr|A7NWF4|A7NWF4_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera
Align length 52
Score (bit) 103.0
E-value 7.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916121|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_D05.
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7NWF4|A7NWF4_VITVI Chromosome chr5 scaffold_2, whole genome ...   103   7e-21
tr|Q7F1B1|Q7F1B1_ORYSJ Os07g0211800 protein OS=Oryza sativa subs...   102   1e-20
tr|B8B8E8|B8B8E8_ORYSI Putative uncharacterized protein OS=Oryza...   102   1e-20
tr|B7EB72|B7EB72_ORYSJ cDNA clone:J013035L06, full insert sequen...   102   1e-20
tr|A3BHR8|A3BHR8_ORYSJ Putative uncharacterized protein OS=Oryza...   102   1e-20
tr|Q94IU8|Q94IU8_ARATH Putative uncharacterized protein (Putativ...    94   7e-18
tr|A9T9C9|A9T9C9_PHYPA Predicted protein OS=Physcomitrella paten...    87   5e-16
tr|O44180|O44180_CAEEL Putative uncharacterized protein M04G7.2 ...    36   1.7  
tr|B2W8Z5|B2W8Z5_PYRTR Putative uncharacterized protein OS=Pyren...    34   5.0  

>tr|A7NWF4|A7NWF4_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019899001
           PE=4 SV=1
          Length = 347

 Score =  103 bits (257), Expect = 7e-21
 Identities = 47/52 (90%), Positives = 49/52 (94%)
 Frame = -2

Query: 568 ALVERLCKAMGGAEKVEIEWGNHSLSNRVKEAVNAIIDFVKREGPKGWDDPW 413
           ALVERLC+A+GGAEKVEIEWGNHSLSNRV EAV AIIDFV REGPKGWDDPW
Sbjct: 295 ALVERLCRALGGAEKVEIEWGNHSLSNRVAEAVQAIIDFVIREGPKGWDDPW 346


>tr|Q7F1B1|Q7F1B1_ORYSJ Os07g0211800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1664_D08.103-1 PE=2 SV=1
          Length = 356

 Score =  102 bits (254), Expect = 1e-20
 Identities = 44/52 (84%), Positives = 50/52 (96%)
 Frame = -2

Query: 568 ALVERLCKAMGGAEKVEIEWGNHSLSNRVKEAVNAIIDFVKREGPKGWDDPW 413
           ALV+RLC+A+G AEKVEIEWGNH+LSNRV+EAV AI+DFVKREGPKGWDDPW
Sbjct: 304 ALVDRLCRALGNAEKVEIEWGNHALSNRVQEAVRAIVDFVKREGPKGWDDPW 355


>tr|B8B8E8|B8B8E8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25358 PE=4 SV=1
          Length = 356

 Score =  102 bits (254), Expect = 1e-20
 Identities = 44/52 (84%), Positives = 50/52 (96%)
 Frame = -2

Query: 568 ALVERLCKAMGGAEKVEIEWGNHSLSNRVKEAVNAIIDFVKREGPKGWDDPW 413
           ALV+RLC+A+G AEKVEIEWGNH+LSNRV+EAV AI+DFVKREGPKGWDDPW
Sbjct: 304 ALVDRLCRALGNAEKVEIEWGNHALSNRVQEAVRAIVDFVKREGPKGWDDPW 355


>tr|B7EB72|B7EB72_ORYSJ cDNA clone:J013035L06, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 285

 Score =  102 bits (254), Expect = 1e-20
 Identities = 44/52 (84%), Positives = 50/52 (96%)
 Frame = -2

Query: 568 ALVERLCKAMGGAEKVEIEWGNHSLSNRVKEAVNAIIDFVKREGPKGWDDPW 413
           ALV+RLC+A+G AEKVEIEWGNH+LSNRV+EAV AI+DFVKREGPKGWDDPW
Sbjct: 233 ALVDRLCRALGNAEKVEIEWGNHALSNRVQEAVRAIVDFVKREGPKGWDDPW 284


>tr|A3BHR8|A3BHR8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022590 PE=4 SV=1
          Length = 379

 Score =  102 bits (254), Expect = 1e-20
 Identities = 44/52 (84%), Positives = 50/52 (96%)
 Frame = -2

Query: 568 ALVERLCKAMGGAEKVEIEWGNHSLSNRVKEAVNAIIDFVKREGPKGWDDPW 413
           ALV+RLC+A+G AEKVEIEWGNH+LSNRV+EAV AI+DFVKREGPKGWDDPW
Sbjct: 327 ALVDRLCRALGNAEKVEIEWGNHALSNRVQEAVRAIVDFVKREGPKGWDDPW 378


>tr|Q94IU8|Q94IU8_ARATH Putative uncharacterized protein (Putative
           uncharacterized protein At5g19050) OS=Arabidopsis
           thaliana GN=At5g19050 PE=2 SV=1
          Length = 361

 Score = 93.6 bits (231), Expect = 7e-18
 Identities = 45/52 (86%), Positives = 45/52 (86%)
 Frame = -2

Query: 568 ALVERLCKAMGGAEKVEIEWGNHSLSNRVKEAVNAIIDFVKREGPKGWDDPW 413
           ALV RL KAMGGAEKVEIE GNHSLSNRV EAV AII FVKREGP GWDDPW
Sbjct: 309 ALVNRLSKAMGGAEKVEIEHGNHSLSNRVHEAVQAIIGFVKREGPSGWDDPW 360


>tr|A9T9C9|A9T9C9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_220091 PE=4 SV=1
          Length = 292

 Score = 87.4 bits (215), Expect = 5e-16
 Identities = 36/52 (69%), Positives = 43/52 (82%)
 Frame = -2

Query: 565 LVERLCKAMGGAEKVEIEWGNHSLSNRVKEAVNAIIDFVKREGPKGWDDPWG 410
           L++RLC AMGGAE+  I WGNHSLSNRV+E V  +I F+K+ GPKGWDDPWG
Sbjct: 241 LLKRLCDAMGGAERAAIPWGNHSLSNRVEETVRTMISFIKKGGPKGWDDPWG 292


>tr|O44180|O44180_CAEEL Putative uncharacterized protein M04G7.2
           OS=Caenorhabditis elegans GN=M04G7.2 PE=2 SV=1
          Length = 550

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
 Frame = +3

Query: 27  RDS*DRLTNRNCTTMPFSPTWPPKITKTPQKSDGQQFVSWLAVSNPQDMKQEKEPNVFLY 206
           R S  ++  +    +PFSP+  PK T TP  S+G +    LA+++    + E E + F+ 
Sbjct: 80  RKSVQQVVKKVVNHIPFSPSKQPKSTSTPPVSEGNR--KRLAMADVSINQLESEMDSFVK 137

Query: 207 LSEDGQCERQNTTISVHDS*L*PASLPKNTQACNQ*IHGPPPENSLSSK------ALRTL 368
             E  +   +  T  +H +     SL ++ +A        PP N  +S+       +RT 
Sbjct: 138 KIEPNE---RRATQYIHSN-----SLSRSNEAV-------PPGNVKTSQQKADHHLIRTT 182

Query: 369 QSLIGFFVPTTSLYPQGS 422
           +SLIG    T ++Y + +
Sbjct: 183 RSLIGLDGETEAVYSKAT 200


>tr|B2W8Z5|B2W8Z5_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_06453 PE=4 SV=1
          Length = 277

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = -3

Query: 336 FLEEVHVSTGCTPVYFWVEMPAITRNHVH*WLYFDAHIVHLHSNKGRHWALF 181
           F   V +ST    V++WVE+  IT   +  W+Y +  +V  H + GRH ALF
Sbjct: 15  FCAIVILSTTGFVVWYWVEVILITFRMLFYWIY-ELKVVIKHEDLGRHGALF 65