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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916123
Clone id YMU001_000083_D09
Library
Length 406
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCAACAAGAAGGAGCTGGCCCAGCTGAAGTGGATGGCATAGAGCACGGGCATCACCGAG
CGAATGACAAGGGGAACTGCCATGGTAAAGGGTTGCTAGTCGGTGTGGATGGAAGCACAA
AGTGATTGGGTAGAGGAGGGAATAATTGCCATAGGCACATGCGGTCACTCATGGGAAGGT
CACCATGATGTGAGAAGTTGTTGAGTGCTGGGCCCATGGGACAACCAATCACAGCTAGGG
CTAAGCCAACAGGTCAGTGGATGACAAGCAACGTATAGCATCAGGGAAGTAAGCAAAAGA
GCGAGGTTATCAAGTGGAAGGAAACAGGTACAACAGGCACATTAGGTGCATGAGCTGTTG
GGCTAGGGCTGATATGAAAGAGGGTGGAGGTAGAGGAGGGGGAAGG
■■Homology search results ■■ -
sp_hit_id Q0VBZ9
Definition sp|Q0VBZ9|MRP_BOVIN MARCKS-related protein OS=Bos taurus
Align length 44
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916123|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_D09.
         (406 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0VBZ9|MRP_BOVIN MARCKS-related protein OS=Bos taurus GN=MARC...    31   2.2  
sp|A7XYI6|SOBP_RAT Sine oculis-binding protein homolog OS=Rattus...    30   3.7  
sp|Q0P5V2|SOBP_MOUSE Sine oculis-binding protein homolog OS=Mus ...    30   3.7  
sp|P28667|MRP_MOUSE MARCKS-related protein OS=Mus musculus GN=Ma...    30   3.7  
sp|Q7G6K7|FH3_ORYSJ Formin-like protein 3 OS=Oryza sativa subsp....    29   6.3  
sp|P49006|MRP_HUMAN MARCKS-related protein OS=Homo sapiens GN=MA...    29   6.3  
sp|Q22292|TBX8_CAEEL T-box transcription factor tbx-8 OS=Caenorh...    29   8.2  
sp|Q6BCL1|PRAM_MOUSE PML-RARA-regulated adapter molecule 1 OS=Mu...    29   8.2  
sp|A9JRI0|HEAT6_DANRE HEAT repeat-containing protein 6 OS=Danio ...    29   8.2  
sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=A...    29   8.2  
sp|Q9EPH2|MRP_RAT MARCKS-related protein OS=Rattus norvegicus GN...    29   8.2  
sp|P35566|MRP_RABIT MARCKS-related protein OS=Oryctolagus cunicu...    29   8.2  

>sp|Q0VBZ9|MRP_BOVIN MARCKS-related protein OS=Bos taurus
           GN=MARCKSL1 PE=2 SV=1
          Length = 198

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +3

Query: 12  GAGPAEVDGIEHGHHRANDKGNCHGKGLLVGVDGSTK*LGRGGN 143
           GA PA+V+G E+GH ++N   +  G+G    V+G+ +  G  G+
Sbjct: 20  GASPAKVNGQENGHVKSNGDLSPKGEGESPPVNGTEEAAGATGD 63


>sp|A7XYI6|SOBP_RAT Sine oculis-binding protein homolog OS=Rattus
           norvegicus GN=Sobp PE=2 SV=1
          Length = 864

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
 Frame = -1

Query: 406 PSPSSTSTLFHISPSPTAHAPNVPV-VPVSFHLITSLFCLLP*CYTLLVIH*PVGLAL-A 233
           P PSS++T   +SPS TA+     +  PV   L  S    +P          PV +   A
Sbjct: 324 PGPSSSTT---VSPSDTANCSVTKIPTPVPKSLPISETPSIP----------PVSVQPPA 370

Query: 232 VIGCPMGPALNN----FSHHGDLPMS---DRMCLWQLFPPL----PNHFVLPSTPTSNPL 86
            IG P+G    +     ++ G +P+    ++  + Q+ PP     P+H   P++P SNP+
Sbjct: 371 SIGPPLGVPPRSPPMVMTNRGPVPLPIFMEQQIIQQIRPPFIRGPPHHASNPNSPLSNPM 430


>sp|Q0P5V2|SOBP_MOUSE Sine oculis-binding protein homolog OS=Mus
           musculus GN=Sobp PE=2 SV=1
          Length = 864

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
 Frame = -1

Query: 406 PSPSSTSTLFHISPSPTAHAPNVPV-VPVSFHLITSLFCLLP*CYTLLVIH*PVGLAL-A 233
           P PSS++T   +SPS TA+     +  PV   L  S    +P          PV +   A
Sbjct: 324 PGPSSSTT---VSPSDTANCSVTKIPTPVPKSLPISETPSIP----------PVSVQPPA 370

Query: 232 VIGCPMGPALNN----FSHHGDLPMS---DRMCLWQLFPPL----PNHFVLPSTPTSNPL 86
            IG P+G    +     ++ G +P+    ++  + Q+ PP     P+H   P++P SNP+
Sbjct: 371 SIGPPLGVPPRSPPMVMTNRGPVPLPIFMEQQIIQQIRPPFIRGPPHHASNPNSPLSNPM 430


>sp|P28667|MRP_MOUSE MARCKS-related protein OS=Mus musculus
           GN=Marcksl1 PE=1 SV=2
          Length = 200

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 12  GAGPAEVDGIEHGHHRANDKGNCHGKGLLVGVDGSTK*LGRGGN 143
           GA PA+ +G E+GH R+N      G+G    V+G+ +  G  G+
Sbjct: 20  GASPAKANGQENGHVRSNGDLTPKGEGESPPVNGTDEAAGATGD 63


>sp|Q7G6K7|FH3_ORYSJ Formin-like protein 3 OS=Oryza sativa subsp.
           japonica GN=FH3 PE=2 SV=2
          Length = 1234

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 139 PPLPNHFVLPSTPTSNPLP 83
           PPLPNH VLP  P   P P
Sbjct: 625 PPLPNHSVLPPPPPPPPPP 643


>sp|P49006|MRP_HUMAN MARCKS-related protein OS=Homo sapiens
           GN=MARCKSL1 PE=1 SV=2
          Length = 195

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 12  GAGPAEVDGIEHGHHRANDKGNCHGKGLLVGVDGSTK*LGRGGN 143
           GA PA+ +G E+GH ++N   +  G+G    V+G+ +  G  G+
Sbjct: 20  GASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGD 63


>sp|Q22292|TBX8_CAEEL T-box transcription factor tbx-8
           OS=Caenorhabditis elegans GN=tbx-8 PE=2 SV=3
          Length = 315

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 145 LFPPLPNHFVLPSTPTSNPLPWQFPLSFAR*CPCSMPSTSAGPAPS 8
           LF  LP    L +T    P+P+QFP       PC  P +   P PS
Sbjct: 255 LFYSLPYFSHLAATGNFPPVPFQFPFGL----PCFSPMSFPTPPPS 296


>sp|Q6BCL1|PRAM_MOUSE PML-RARA-regulated adapter molecule 1 OS=Mus
           musculus GN=Pram1 PE=1 SV=1
          Length = 675

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 130 PNH--FVLPSTPTSNPLPWQFPLSFAR*CPCSMPSTSAGPAPSC 5
           P H  F  P  P   P   + P S +    CS+PS SAG +P C
Sbjct: 382 PQHGKFFQPEFPKGLPRKPKLPGSVSE---CSLPSASAGSSPQC 422


>sp|A9JRI0|HEAT6_DANRE HEAT repeat-containing protein 6 OS=Danio
           rerio GN=heatr6 PE=2 SV=1
          Length = 1201

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 109 STPTSNPLPWQFPLSFAR*CPCSMPSTSAGPAPSCW 2
           STP  +PL W+ P    R    S P+ + GP   CW
Sbjct: 625 STPQESPLSWRQPA--RRDEEASSPAAAEGPEGPCW 658


>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49
           OS=Arabidopsis thaliana GN=RH49 PE=2 SV=2
          Length = 558

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 164 PHVPMAIIPSSTQSLCASIHTD*QPFTMAVPLV 66
           PH  M +I S T+ L A IH   +PF   +P V
Sbjct: 88  PHQVMGVIISPTRELSAQIHKVAEPFVSTLPNV 120
tr_hit_id A8HZN5
Definition tr|A8HZN5|A8HZN5_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii
Align length 34
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916123|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_D09.
         (406 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8HZN5|A8HZN5_CHLRE Predicted protein (Fragment) OS=Chlamydom...    33   5.5  
tr|Q89FZ4|Q89FZ4_BRAJA Blr6554 protein OS=Bradyrhizobium japonic...    33   7.2  
tr|B1ZX43|B1ZX43_OPITP Translation initiation factor IF-2 OS=Opi...    33   7.2  
tr|B0E3N5|B0E3N5_LACBS Predicted protein OS=Laccaria bicolor (st...    33   7.2  
tr|B0CBH9|B0CBH9_ACAM1 Putative uncharacterized protein OS=Acary...    33   9.4  
tr|B6KIS6|B6KIS6_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.4  

>tr|A8HZN5|A8HZN5_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_93801 PE=4
           SV=1
          Length = 687

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = -1

Query: 244 LALAVIGCPMGPALNNFSHHGDLPMSDRMCLWQL 143
           LAL+V+GCP+GP +  F+     P+S+R+ +W L
Sbjct: 24  LALSVVGCPLGPDV--FTAAVSSPVSERVAVWLL 55


>tr|Q89FZ4|Q89FZ4_BRAJA Blr6554 protein OS=Bradyrhizobium japonicum
           GN=blr6554 PE=4 SV=1
          Length = 496

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 124 HFVLPSTPTSNPLPWQFPLSFAR*CPCSMPSTSAGP 17
           ++VLP+T  + P P    ++ A  CPCS PST A P
Sbjct: 379 NYVLPATVAATPAP--VAVAMAPTCPCSAPSTPATP 412


>tr|B1ZX43|B1ZX43_OPITP Translation initiation factor IF-2
           OS=Opitutus terrae (strain DSM 11246 / PB90-1)
           GN=Oter_2814 PE=4 SV=1
          Length = 845

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 139 PPLPNHFVLPSTPTSNPLPWQFPLSFAR*CPCSMPSTSAGPAP 11
           PPLP   V P++  S P P   P +  R  P   P+  A PAP
Sbjct: 122 PPLPPRHVAPASAPSAPRPVTIPTAPPRVAPPPPPAAKAPPAP 164


>tr|B0E3N5|B0E3N5_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_335864 PE=4 SV=1
          Length = 274

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 16/61 (26%)
 Frame = -1

Query: 145 LFP-PLPNHFVLPST---------------PTSNPLPWQFPLSFAR*CPCSMPSTSAGPA 14
           LFP P+P HF +P +               PT  P+P  FPL F   CP ++P T + P 
Sbjct: 194 LFPSPVPPHFHVPLSFLLPLSLSVPPHFPVPTPFPVPTPFPLPFP--CPYTLPPTFSLPL 251

Query: 13  P 11
           P
Sbjct: 252 P 252


>tr|B0CBH9|B0CBH9_ACAM1 Putative uncharacterized protein
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_2968
           PE=4 SV=1
          Length = 586

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 136 PLPNHFVLPSTPTSNPLPWQFPLSFAR*CPCSMPSTSAGPAPS 8
           P P H   PS  +S+P P   P + +     + P+T A P+PS
Sbjct: 427 PAPQHSASPSPSSSSPTPTASPATESAPSSSATPNTEAAPSPS 469


>tr|B6KIS6|B6KIS6_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_002180 PE=4 SV=1
          Length = 1256

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -1

Query: 178  LPMSDRMCLWQLFPPLPNHFVLPSTPTSNPLPWQFPLSFAR*CPCSMPSTSAGPAP 11
            +P  D     +LF P  +   LP++P+S+P    FP S +     S P+ S+ P+P
Sbjct: 1007 IPSPDHRTFPKLFSPFSS---LPASPSSSPSSSSFPSSSSSPSSSSSPTPSSSPSP 1059