BP916129
Clone id YMU001_000083_E03
Library
Length 441
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GCCGCATCTGGCATACATTAATCATTAAACTGGACCTGTTAACAAGCCCTGATCACTGAC
CATTAAATGTGTAGGCTTCAAAGAAGCTTAGCTTGCATTTCTCTGCTCTTTTTCTCATCA
TGGCAACGGAGCTGCACGACAACGCAAGGCTCAAAGTTCTAGATCCAGGCAAGCGGACGA
GGGCGCCAAAGGCAGTAAAGGAAGTCGCCATACTTCCAATAGACAAGCCAGGGAGGACAC
AGAAACTGAGACGGAGGCAGATATTAATTGGGATGCAAATACAGACAATTGTAAGAAAGC
TCCAAAGAGGCGTCGAGACTCCAAGATGAGAAGAGGACGGACCAACGGTGATCGGCATGA
TTACACATCCTCGTTGAAAATATCTTTTCCCGTGTTCAAAGGAGGCAAGAAGAATGATCC
GGATGTTCACATCCAAGCCTT
■■Homology search results ■■ -
sp_hit_id Q5ZKU8
Definition sp|Q5ZKU8|PK1IP_CHICK p21-activated protein kinase-interacting protein 1-like OS=Gallus gallus
Align length 78
Score (bit) 29.6
E-value 5.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916129|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_E03.
(441 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5ZKU8|PK1IP_CHICK p21-activated protein kinase-interacting p... 30 5.7
sp|Q07953|SDO1_YEAST Ribosome maturation protein SDO1 OS=Sacchar... 29 7.5
sp|Q9LZM5|U497X_ARATH UPF0497 membrane protein At5g02060 OS=Arab... 29 9.8
sp|A0QSL9|RL17_MYCS2 50S ribosomal protein L17 OS=Mycobacterium ... 29 9.8

>sp|Q5ZKU8|PK1IP_CHICK p21-activated protein kinase-interacting
protein 1-like OS=Gallus gallus GN=PAK1IP1 PE=2 SV=1
Length = 369

Score = 29.6 bits (65), Expect = 5.7
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3

Query: 78 SKKLSLHFSALFLIMATELHDNA-RLKVLDPGKRTRAPKAVKEVAILPIDKPGRTQKLRR 254
S K L A++L A+E+ +N + + P AVK+ + ++K G+ K RR
Sbjct: 285 STKARLTCLAVWLDQASEMKENCGKAATSTEANESEKPSAVKKKKVCGMNKSGKLTKQRR 344

Query: 255 RQILIGMQIQTIVRKLQR 308
R + +++ ++K ++
Sbjct: 345 RIVPAKRKLEAPLQKKKK 362


>sp|Q07953|SDO1_YEAST Ribosome maturation protein SDO1
OS=Saccharomyces cerevisiae GN=SDO1 PE=1 SV=1
Length = 250

Score = 29.3 bits (64), Expect = 7.5
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +3

Query: 153 KVLDPGKRTRAP-----KAVKEVAILP-IDKPGRTQKLRRRQILIGMQIQTIVR 296
K ++P + R P KA++E+ P I+KP + Q L ++L+ QI IVR
Sbjct: 118 KCINPVSKKRYPPTMIHKALQELKFSPVINKPAKLQALEAIKLLVSKQIIPIVR 171


>sp|Q9LZM5|U497X_ARATH UPF0497 membrane protein At5g02060
OS=Arabidopsis thaliana GN=At5g02060 PE=2 SV=1
Length = 152

Score = 28.9 bits (63), Expect = 9.8
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -3

Query: 262 ICLRLSFCVLPGLSIGSMATS-----FTAFGALVRLPGSRTL-SLALSCSSVAMMRKRAE 101
+ LRL C SIG M +S +TAF LV G + + S L+C V +R++++
Sbjct: 14 LILRLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQLIWSFGLACLDVYAIRRKSD 73


>sp|A0QSL9|RL17_MYCS2 50S ribosomal protein L17 OS=Mycobacterium
smegmatis GN=rplQ PE=3 SV=1
Length = 199

Score = 28.9 bits (63), Expect = 9.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3

Query: 90 SLHFSALFLIMATELHDNARLKVLDPGKRTRAPKAVK 200
S H SAL +AT L ++ R+K +P R P A K
Sbjct: 14 SSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEK 50


tr_hit_id A9V5J8
Definition tr|A9V5J8|A9V5J8_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis
Align length 66
Score (bit) 37.4
E-value 0.37
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916129|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_E03.
(441 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9V5J8|A9V5J8_MONBE Predicted protein (Fragment) OS=Monosiga ... 37 0.37
tr|A9UWW6|A9UWW6_MONBE Predicted protein OS=Monosiga brevicollis... 37 0.37
tr|Q3JBL5|Q3JBL5_NITOC NADH dehydrogenase (Quinone) OS=Nitrosoco... 36 1.1
tr|B6C1C7|B6C1C7_9GAMM NADH-Ubiquinone/plastoquinone (Complex I)... 36 1.1
tr|A9VCF4|A9VCF4_MONBE Predicted protein OS=Monosiga brevicollis... 35 1.9
tr|A9V981|A9V981_MONBE Predicted protein OS=Monosiga brevicollis... 34 3.2
tr|Q8FPE2|Q8FPE2_COREF Putative uncharacterized protein OS=Coryn... 33 5.4
tr|A9IQR6|A9IQR6_BORPD Hom protein OS=Bordetella petrii (strain ... 33 5.4
tr|B6T990|B6T990_MAIZE Putative uncharacterized protein OS=Zea m... 33 5.4
tr|A9UZS3|A9UZS3_MONBE Predicted protein OS=Monosiga brevicollis... 33 5.4
tr|Q4SEV4|Q4SEV4_TETNG Chromosome undetermined SCAF14611, whole ... 33 7.0
tr|A9V4Y0|A9V4Y0_MONBE Predicted protein OS=Monosiga brevicollis... 33 7.0
tr|A9V4U8|A9V4U8_MONBE Predicted protein OS=Monosiga brevicollis... 33 7.0
tr|A2QC55|A2QC55_ASPNC Catalytic activity: UDP-N-acetyl-D-glucos... 33 7.0
tr|B1VI05|B1VI05_CORU7 Putative membrane protein OS=Corynebacter... 33 9.2

>tr|A9V5J8|A9V5J8_MONBE Predicted protein (Fragment) OS=Monosiga
brevicollis GN=27532 PE=4 SV=1
Length = 407

Score = 37.4 bits (85), Expect = 0.37
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -3

Query: 325 LGVSTPLWSFLTIVC-ICIPINICLRLSFCVLPGLSIGSMATSFTAFGALVRLPGSRTLS 149
L +S PL L + +C+P+++CL LS C+ LS+ + + V + S +LS
Sbjct: 321 LSLSVPLSVCLCLCASVCVPLSVCLCLSLCLSVSLSVSVSVSLSLSVSVSVSVSLSLSLS 380

Query: 148 LALSCS 131
L+LS S
Sbjct: 381 LSLSLS 386


>tr|A9UWW6|A9UWW6_MONBE Predicted protein OS=Monosiga brevicollis
GN=24590 PE=4 SV=1
Length = 100

Score = 37.4 bits (85), Expect = 0.37
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Frame = -3

Query: 286 VCICIPINICL----RLSFCVLPGLSIGSMATSFTAFGALVRLPGSRTLSLALSCSS 128
VC+C+ ++ CL LS C+L LS S++ S + F + L S +LSL+LS S+
Sbjct: 5 VCVCVCVSFCLCFFVSLSVCLLSSLSSLSVSLSLSLFSLSLSLCLSLSLSLSLSISA 61


>tr|Q3JBL5|Q3JBL5_NITOC NADH dehydrogenase (Quinone)
OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=Noc_1281 PE=3 SV=1
Length = 493

Score = 35.8 bits (81), Expect = 1.1
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = -3

Query: 361 IMPITVGPSSSHLGVSTPLWSFLTIVCICIPINICLRLSFCVLPGLSIGSMATSFTAFGA 182
+ P+ +H TP+ S L+ + + P + LRL F V P + G+ A GA
Sbjct: 225 LFPLHFWLPPAHANAPTPVSSALSALVVKAPFYLLLRLWFTVFPDSTTGAAANLLGLLGA 284

Query: 181 LVRLPGS------RTLSLALSCSSVAMM 116
+ L GS + L L ++ S+VA +
Sbjct: 285 IAILWGSIQALQTQRLKLLVAYSTVAQL 312


>tr|B6C1C7|B6C1C7_9GAMM NADH-Ubiquinone/plastoquinone (Complex I),
domain protein OS=Nitrosococcus oceani AFC27
GN=NOC27_1446 PE=4 SV=1
Length = 493

Score = 35.8 bits (81), Expect = 1.1
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = -3

Query: 361 IMPITVGPSSSHLGVSTPLWSFLTIVCICIPINICLRLSFCVLPGLSIGSMATSFTAFGA 182
+ P+ +H TP+ S L+ + + P + LRL F V P + G+ A GA
Sbjct: 225 LFPLHFWLPPAHANAPTPVSSALSALVVKAPFYLLLRLWFTVFPDSTTGAAANLLGLLGA 284

Query: 181 LVRLPGS------RTLSLALSCSSVAMM 116
+ L GS + L L ++ S+VA +
Sbjct: 285 IAILWGSIQALQTQRLKLLVAYSTVAQL 312


>tr|A9VCF4|A9VCF4_MONBE Predicted protein OS=Monosiga brevicollis
GN=29890 PE=4 SV=1
Length = 1271

Score = 35.0 bits (79), Expect = 1.9
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = -3

Query: 367 CVIMPITVGPSSSHLGVSTPLWSFLTIVCICIPINICLRLSFCVLPGLSIGSMATSFTAF 188
C+ + ++V S S L +S L S +C+C+ +++CL LS C+ +S+ + +
Sbjct: 12 CLCLCLSVSVSVS-LSLSLCL-SLCLCLCLCLCLSVCLCLSVCLSVSVSVSVSVSVSLSL 69

Query: 187 GALVRLPGSRTLSLALSCS 131
+ L S +LSL+LS S
Sbjct: 70 SLSLSLSLSLSLSLSLSLS 88


>tr|A9V981|A9V981_MONBE Predicted protein OS=Monosiga brevicollis
GN=28843 PE=4 SV=1
Length = 552

Score = 34.3 bits (77), Expect = 3.2
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = -3

Query: 289 IVCICIPINICLRLSFCVLPGLSIGSMATSFTAFGALVRLPGSRTLSLALSCSSVAMMRK 110
++C+C+ + +C+ + CV LS+ + F L L S +LSL+ S+A + +
Sbjct: 1 MLCVCVCVCVCVCMCVCVCVSLSLSLSHSRSNQFITLFLLSVSLSLSLSAVSLSLACVGR 60

Query: 109 RAE 101
+AE
Sbjct: 61 QAE 63


>tr|Q8FPE2|Q8FPE2_COREF Putative uncharacterized protein
OS=Corynebacterium efficiens GN=CE1836 PE=4 SV=1
Length = 210

Score = 33.5 bits (75), Expect = 5.4
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = -3

Query: 367 CVIMPITVGPSSSHL---------GVSTPLWSFLTIVCICIPINICLRLSFCVLPGLSIG 215
C I PIT P + L G TP W F+ I C+ + + L+L +L GL I
Sbjct: 5 CPIPPITQQPGRTSLMPDLAPYEQGPQTPRWPFVVIGLCCLVLVVWLKLPGLILAGLIIA 64

Query: 214 SM 209
++
Sbjct: 65 TV 66


>tr|A9IQR6|A9IQR6_BORPD Hom protein OS=Bordetella petrii (strain
ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=hom PE=4 SV=1
Length = 452

Score = 33.5 bits (75), Expect = 5.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3

Query: 120 MATELHDNARLKVLDPGKRTR----APKAVKEVAILPIDKPGRTQKLRRR 257
+ +L D RL DPG R P A+ ++AILPIDK + LR R
Sbjct: 328 VVADLVDVTRLHTADPGNRVPHLAFQPDALSDLAILPIDKVSTSYYLRLR 377


>tr|B6T990|B6T990_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 154

Score = 33.5 bits (75), Expect = 5.4
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Frame = -3

Query: 262 ICLRLSFCVLPGLSIGSMAT-----SFTAFGALVRLPGSRTL-SLALSCSSVAMMRKRAE 101
+ LRLS CV G S+G+MAT ++TAF L+ G + L S L+C V ++ + +
Sbjct: 14 MALRLSQCVSAGASMGAMATAYGFSNYTAFCYLIASMGLQLLWSFGLACLDVYSLKTKRD 73


>tr|A9UZS3|A9UZS3_MONBE Predicted protein OS=Monosiga brevicollis
GN=25559 PE=4 SV=1
Length = 1171

Score = 33.5 bits (75), Expect = 5.4
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = -3

Query: 292 TIVCICIPINICLRLSFCVLPGLSIGSMATSFTAFGALVRLPGSRTLSLALSCSSVAMMR 113
T +C+C+ +++C+ + CV SIG F+ G P T LA +
Sbjct: 6 TAICVCVSVHVCVCVCVCVCVEASIG--VRHFSNHGPQFGCPNMMTAQLAQGSDQEGHLL 63

Query: 112 KRAEKCKLSFFEAY 71
KR + ++ Y
Sbjct: 64 KRGKNTNSAWRRRY 77