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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916137
Clone id YMU001_000083_E12
Library
Length 486
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCATCATCCTTGTAGAAAGACCTTATGGGTAAAAACATATCAAACCAAGCCTCAATTAAA
CACATAGATATGACTCAGCATTACTGCAAGAATATCCTTGAAGGTAACAATGCCAATAAG
CACATCGTCTTCCTCAGTCACCCACACGTAGTGTTCTCGGTGGGCAAGCGCTTGCAACAA
AACCGCAATCAACGAGGCTTTTCGGATTGCAGAAAATTGGACCGCTCCTGCTCTTTAGAG
TAAACCCCTTTCTGCTACTGCGAAAATGAGGCGCATGCCACTTTCTAGAAAGATCGTGAG
GCCCAATAGGGCTGTCCGCTCCTGACTCGTCATCCTCAGAAGAAGAGTCCTCCCACATTT
CCAATTTCTGAAGGAGAGGATTTGCCTCTTCCTTTCGTGAAGCTAGCAAATGGGATTGCT
TCTCTGCGTCGCTGAGCTTCTCAAGAACTCGGGTGCGGATCGTGTCTACCAGAACCTGTG
GCGGGT
■■Homology search results ■■ -
sp_hit_id O29147
Definition sp|O29147|Y1118_ARCFU Uncharacterized protein AF_1118 OS=Archaeoglobus fulgidus
Align length 16
Score (bit) 31.2
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916137|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_E12.
         (486 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O29147|Y1118_ARCFU Uncharacterized protein AF_1118 OS=Archaeo...    31   2.6  
sp|Q8XVY9|UBIA_RALSO 4-hydroxybenzoate octaprenyltransferase OS=...    30   5.8  
sp|A0PJR5|ECHD3_DANRE Enoyl-CoA hydratase domain-containing prot...    30   7.6  
sp|O83051|GYRA_TREPA DNA gyrase subunit A OS=Treponema pallidum ...    29   9.9  
sp|Q9N2J8|ENH3_HUMAN HERV-H_2q24.1 provirus ancestral Env polypr...    29   9.9  

>sp|O29147|Y1118_ARCFU Uncharacterized protein AF_1118
           OS=Archaeoglobus fulgidus GN=AF_1118 PE=4 SV=1
          Length = 178

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 434 ELLKNSGADRVYQNLW 481
           E+L NSG+D VYQNLW
Sbjct: 50  EILDNSGSDSVYQNLW 65


>sp|Q8XVY9|UBIA_RALSO 4-hydroxybenzoate octaprenyltransferase
           OS=Ralstonia solanacearum GN=ubiA PE=3 SV=1
          Length = 291

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = -1

Query: 192 LIAVLLQALAHREHYVWVTEEDDVLIGI----VTFK--DILAVMLSHIYVF 58
           L A +L A+A+   Y  V  +DD+LIGI    +TF   D+ A+ML +   F
Sbjct: 174 LAANVLWAIAYDTAYAMVDRDDDLLIGIQTSAITFGRFDVAAIMLCYAGFF 224


>sp|A0PJR5|ECHD3_DANRE Enoyl-CoA hydratase domain-containing protein
           3, mitochondrial OS=Danio rerio GN=echdc3 PE=2 SV=2
          Length = 289

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 64  IDMTQHYCKNIL-EGNNANKHIVFLSHPHVVFSVGKRLQQNRNQRGFSDCRKLDRSCS 234
           + M +   +NIL + +N   H++ +S    VFS G  LQ+  +  G    R++  SCS
Sbjct: 55  LQMLESLRENILTDADNPELHVIIISAVGPVFSSGHDLQELSSAEGSDLPRRVFHSCS 112


>sp|O83051|GYRA_TREPA DNA gyrase subunit A OS=Treponema pallidum
           GN=gyrA PE=1 SV=1
          Length = 813

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = -1

Query: 351 RTLLLRMTSQERTALLGLTIFLESGMRLIFAVAERGLL*RAGAVQFSAIRKASLIAVLLQ 172
           ++LL+  T +E TA++ L  F  S    +F    RG++ +     F   +   +IA+ L 
Sbjct: 591 KSLLMVATDEEITAIVSLREF--SNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLS 648

Query: 171 ALAHREHYVWVTEEDDVLI 115
                   V V +ED+V++
Sbjct: 649 GGDTLVSAVLVQDEDEVML 667


>sp|Q9N2J8|ENH3_HUMAN HERV-H_2q24.1 provirus ancestral Env
           polyprotein OS=Homo sapiens PE=2 SV=1
          Length = 555

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 316 PLLTRHPQKKSPPTFPISEGEDLPLPFVKLANGIASL 426
           PL+T  PQK+  P  P+  G  L    + L+ GIA +
Sbjct: 378 PLMTLTPQKRVIPLIPLMVGLGLSASTIALSTGIAGI 414
tr_hit_id A9NVG5
Definition tr|A9NVG5|A9NVG5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 44
Score (bit) 60.5
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916137|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_E12.
         (486 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NVG5|A9NVG5_PICSI Putative uncharacterized protein OS=Picea...    60   2e-10
tr|A9TCG9|A9TCG9_PHYPA Predicted protein OS=Physcomitrella paten...    59   1e-07
tr|A9SQJ0|A9SQJ0_PHYPA Predicted protein OS=Physcomitrella paten...    58   2e-07
tr|Q0WL05|Q0WL05_ARATH Putative uncharacterized protein At5g5375...    57   6e-07
tr|A2Q4R1|A2Q4R1_MEDTR CBS OS=Medicago truncatula GN=MtrDRAFT_AC...    55   2e-06
tr|A7P1J5|A7P1J5_VITVI Chromosome chr19 scaffold_4, whole genome...    54   5e-06
tr|Q5HZ39|Q5HZ39_ARATH At4g27460 OS=Arabidopsis thaliana PE=2 SV=1     53   6e-06
tr|Q84WQ5|Q84WQ5_ARATH Putative uncharacterized protein At4g2746...    53   6e-06
tr|Q0V7Z3|Q0V7Z3_ARATH At4g27460 OS=Arabidopsis thaliana PE=2 SV=1     53   6e-06
tr|A7QYN3|A7QYN3_VITVI Chromosome undetermined scaffold_252, who...    53   7e-06
tr|Q8LNH1|Q8LNH1_ORYSJ Putative uncharacterized protein OSJNBa00...    51   3e-05
tr|Q109G5|Q109G5_ORYSJ cDNA clone:006-204-B02, full insert seque...    51   3e-05
tr|Q0IWM7|Q0IWM7_ORYSJ Os10g0499400 protein (Fragment) OS=Oryza ...    51   3e-05
tr|A2Z908|A2Z908_ORYSI Putative uncharacterized protein OS=Oryza...    51   3e-05
tr|A2X7M8|A2X7M8_ORYSI Putative uncharacterized protein OS=Oryza...    51   3e-05
tr|Q0DZ86|Q0DZ86_ORYSJ Os02g0639300 protein (Fragment) OS=Oryza ...    50   4e-05
tr|A3A9F4|A3A9F4_ORYSJ Putative uncharacterized protein OS=Oryza...    50   4e-05
tr|B4FYA7|B4FYA7_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|B8A2S5|B8A2S5_MAIZE Putative uncharacterized protein OS=Zea m...    49   1e-04
tr|B6TXT1|B6TXT1_MAIZE Putative uncharacterized protein OS=Zea m...    48   3e-04
tr|Q9FI01|Q9FI01_ARATH Arabidopsis thaliana genomic DNA, chromos...    46   0.001
tr|Q7XKE3|Q7XKE3_ORYSJ OSJNBb0017I01.11 protein OS=Oryza sativa ...    45   0.001
tr|Q259D5|Q259D5_ORYSA H0801D08.17 protein OS=Oryza sativa GN=H0...    45   0.001
tr|Q0J8Z2|Q0J8Z2_ORYSJ Os04g0679600 protein OS=Oryza sativa subs...    45   0.001
tr|A7PV99|A7PV99_VITVI Chromosome chr4 scaffold_32, whole genome...    45   0.001
tr|A3AYP2|A3AYP2_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.001
tr|A2XZ08|A2XZ08_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.001
tr|Q5JJJ9|Q5JJJ9_ORYSJ CBS domain containing protein-like OS=Ory...    44   0.003
tr|Q0JGJ8|Q0JGJ8_ORYSJ Os01g0920000 protein (Fragment) OS=Oryza ...    44   0.003
tr|A3A0Z6|A3A0Z6_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.003

>tr|A9NVG5|A9NVG5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 432

 Score = 60.5 bits (145), Expect(2) = 2e-10
 Identities = 27/44 (61%), Positives = 37/44 (84%)
 Frame = -1

Query: 198 ASLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDILAVMLSHI 67
           +SL+AV++QALAHR +YVWVT+ED  L+G+VTF DIL V  +H+
Sbjct: 385 SSLVAVMVQALAHRVNYVWVTDEDSNLVGMVTFLDILDVFWNHL 428



 Score = 27.7 bits (60), Expect(2) = 2e-10
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = -3

Query: 484 PPQVLVDTIRTRVLEKLSDAEKQSHLLASRKEEANPLLQKLEMWXXXXXXXXXSGADSPI 305
           PP+ LVD +R R+ +K+         +   +++ NP                  G+D P+
Sbjct: 285 PPESLVDLVRRRINQKMGP-------MGEGEQDQNP-------------GNPIPGSDKPL 324

Query: 304 GPHD--LSRKWHAPHFRSSRKGFTLKSRSGPIFCNPKSLVDCGF 179
              D   +  W      SS + F+++S SGP+  + K    C F
Sbjct: 325 TETDSLSTDSWE----ESSDEEFSVQSPSGPLRNSNKWSRSCSF 364


>tr|A9TCG9|A9TCG9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169291 PE=4 SV=1
          Length = 641

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 24/45 (53%), Positives = 37/45 (82%)
 Frame = -1

Query: 198 ASLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDILAVMLSHIY 64
           +SL+AV++QAL HR  Y+WVT+ D+ LIGIVT+ D++  +LSH++
Sbjct: 594 SSLVAVMVQALTHRVGYIWVTDSDNTLIGIVTYLDLIRCILSHLH 638


>tr|A9SQJ0|A9SQJ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166179 PE=4 SV=1
          Length = 485

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 25/45 (55%), Positives = 35/45 (77%)
 Frame = -1

Query: 198 ASLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDILAVMLSHIY 64
           +SL+AV+ QAL HR  Y+WVT++D  LIGIVT+ DI+  +L H+Y
Sbjct: 438 SSLVAVMAQALTHRVGYIWVTDDDKNLIGIVTYLDIIQCILGHLY 482


>tr|Q0WL05|Q0WL05_ARATH Putative uncharacterized protein At5g53750
           OS=Arabidopsis thaliana GN=At5g53750 PE=2 SV=1
          Length = 408

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 26/39 (66%), Positives = 33/39 (84%)
 Frame = -1

Query: 204 RKASLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDIL 88
           RK+SL+AV++QA+AHR  YVWV +ED  LIG+VTF DIL
Sbjct: 359 RKSSLMAVMIQAIAHRVSYVWVIDEDGCLIGMVTFVDIL 397


>tr|A2Q4R1|A2Q4R1_MEDTR CBS OS=Medicago truncatula
           GN=MtrDRAFT_AC157507g22v2 PE=4 SV=1
          Length = 396

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 23/44 (52%), Positives = 33/44 (75%)
 Frame = -1

Query: 198 ASLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDILAVMLSHI 67
           +SL+AV++QAL+HR  YVWV +ED  L GIVTF+ +L +   H+
Sbjct: 349 SSLVAVMIQALSHRVSYVWVVQEDGTLYGIVTFQSMLRIFREHL 392


>tr|A7P1J5|A7P1J5_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027639001
           PE=4 SV=1
          Length = 275

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 23/43 (53%), Positives = 32/43 (74%)
 Frame = -1

Query: 195 SLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDILAVMLSHI 67
           SL+AV++QA+AHR +YVWV E+D  L GIVTF  +L +   H+
Sbjct: 229 SLVAVMIQAIAHRVNYVWVIEDDCCLAGIVTFSSMLKIFREHL 271


>tr|Q5HZ39|Q5HZ39_ARATH At4g27460 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 409

 Score = 52.8 bits (125), Expect(2) = 6e-06
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = -1

Query: 201 KASLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDILAV 82
           K+SL+AV++QA+AHR +Y WV E+D   +G+VTF DIL V
Sbjct: 361 KSSLMAVMIQAVAHRVNYAWVVEKDGCFVGMVTFVDILKV 400



 Score = 20.4 bits (41), Expect(2) = 6e-06
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 262 RSSRKGFTLKSRSGPIFCNPKS 197
           RS      +  +S  I CNPKS
Sbjct: 341 RSMSSSARMARKSEAIVCNPKS 362


>tr|Q84WQ5|Q84WQ5_ARATH Putative uncharacterized protein At4g27460
           OS=Arabidopsis thaliana GN=At4g27460 PE=2 SV=1
          Length = 391

 Score = 52.8 bits (125), Expect(2) = 6e-06
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = -1

Query: 201 KASLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDILAV 82
           K+SL+AV++QA+AHR +Y WV E+D   +G+VTF DIL V
Sbjct: 343 KSSLMAVMIQAVAHRVNYAWVVEKDGCFVGMVTFVDILKV 382



 Score = 20.4 bits (41), Expect(2) = 6e-06
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 262 RSSRKGFTLKSRSGPIFCNPKS 197
           RS      +  +S  I CNPKS
Sbjct: 323 RSMSSSARMARKSEAIVCNPKS 344


>tr|Q0V7Z3|Q0V7Z3_ARATH At4g27460 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 391

 Score = 52.8 bits (125), Expect(2) = 6e-06
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = -1

Query: 201 KASLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDILAV 82
           K+SL+AV++QA+AHR +Y WV E+D   +G+VTF DIL V
Sbjct: 343 KSSLMAVMIQAVAHRVNYAWVVEKDGCFVGMVTFVDILKV 382



 Score = 20.4 bits (41), Expect(2) = 6e-06
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 262 RSSRKGFTLKSRSGPIFCNPKS 197
           RS      +  +S  I CNPKS
Sbjct: 323 RSMSSSARMARKSEAIVCNPKS 344


>tr|A7QYN3|A7QYN3_VITVI Chromosome undetermined scaffold_252, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010265001 PE=4 SV=1
          Length = 384

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = -1

Query: 198 ASLIAVLLQALAHREHYVWVTEEDDVLIGIVTFKDILAVMLSHI 67
           +SL+AV++QALAHR  YVWV EED  L GIVTF  I  V   H+
Sbjct: 337 SSLMAVMIQALAHRVSYVWVIEEDWSLAGIVTFSGIFKVFRQHL 380