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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916139
Clone id YMU001_000083_F02
Library
Length 449
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGTCTTTGAATGAATGAAAATACATTCAAACTGTGAACCTTTGCAGCTAAAAGGCACAG
GCACTGCCCAAATTCTGTTCCTGTGCAGCAACATACATACTTTCAGGTTAGCCAGCCATT
AGTCACCTAAAAGTAGCTATGGTAGTTCAATCCTGATATTACATAGACGCCTTCGGCATT
GTGACACCAGGTTTGAGCACCCCATACATTAAAAGGATCAAGTGGTAGTCTTCCTTTCCT
ACAATCATAGTGAACACTCCACATAATAATGTACAGGATATCCACACTGGTTAACAAAAA
TTTTCAACTGCAGGGGCAGCATAATGCATTAGCTCAACGCAACAACACTCTTCGATGTTG
GAAGGGCAAAAATGGTAATTAATCTCTGCTAGGAGGACTCCTCAATGCATTAATGCTGCC
TGAGTAAAACCATGGTTTGTTTGCTCCAG
■■Homology search results ■■ -
sp_hit_id A6WFJ3
Definition sp|A6WFJ3|PURA_KINRD Adenylosuccinate synthetase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)
Align length 24
Score (bit) 30.0
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916139|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_F02.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6WFJ3|PURA_KINRD Adenylosuccinate synthetase OS=Kineococcus ...    30   4.3  
sp|P02646|TNNI3_RABIT Troponin I, cardiac muscle OS=Oryctolagus ...    29   9.6  
sp|P19429|TNNI3_HUMAN Troponin I, cardiac muscle OS=Homo sapiens...    29   9.6  
sp|Q863B6|TNNI3_FELCA Troponin I, cardiac muscle OS=Felis silves...    29   9.6  
sp|Q8MKD5|TNNI3_CANFA Troponin I, cardiac muscle OS=Canis famili...    29   9.6  
sp|P08057|TNNI3_BOVIN Troponin I, cardiac muscle OS=Bos taurus G...    29   9.6  

>sp|A6WFJ3|PURA_KINRD Adenylosuccinate synthetase OS=Kineococcus
           radiotolerans (strain ATCC BAA-149 / DSM 14245 /
           SRS30216) GN=purA PE=3 SV=1
          Length = 428

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -3

Query: 251 TMIVGKEDYHLILLMYGVLKPGVT 180
           T++VG E Y L LL  G+L PGVT
Sbjct: 42  TVVVGDEKYALHLLPSGILTPGVT 65


>sp|P02646|TNNI3_RABIT Troponin I, cardiac muscle OS=Oryctolagus
           cuniculus GN=TNNI3 PE=1 SV=2
          Length = 211

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  IHSNCEPLQLKGTGTAQILFLCSNIH 98
           + + C+PL+L G G A++  LC  +H
Sbjct: 76  LSTRCQPLELAGLGFAELQDLCRQLH 101


>sp|P19429|TNNI3_HUMAN Troponin I, cardiac muscle OS=Homo sapiens
           GN=TNNI3 PE=1 SV=3
          Length = 210

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  IHSNCEPLQLKGTGTAQILFLCSNIH 98
           + + C+PL+L G G A++  LC  +H
Sbjct: 76  LSTRCQPLELAGLGFAELQDLCRQLH 101


>sp|Q863B6|TNNI3_FELCA Troponin I, cardiac muscle OS=Felis
           silvestris catus GN=TNNI3 PE=2 SV=3
          Length = 210

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  IHSNCEPLQLKGTGTAQILFLCSNIH 98
           + + C+PL+L G G A++  LC  +H
Sbjct: 76  LSTRCQPLELAGLGFAELQDLCRQLH 101


>sp|Q8MKD5|TNNI3_CANFA Troponin I, cardiac muscle OS=Canis
           familiaris GN=TNNI3 PE=2 SV=3
          Length = 211

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  IHSNCEPLQLKGTGTAQILFLCSNIH 98
           + + C+PL+L G G A++  LC  +H
Sbjct: 77  LSTRCQPLELAGLGFAELQDLCRQLH 102


>sp|P08057|TNNI3_BOVIN Troponin I, cardiac muscle OS=Bos taurus
           GN=TNNI3 PE=1 SV=2
          Length = 212

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  IHSNCEPLQLKGTGTAQILFLCSNIH 98
           + + C+PL+L G G A++  LC  +H
Sbjct: 78  LSTRCQPLELAGLGFAELQDLCRQLH 103
tr_hit_id A5G9N9
Definition tr|A5G9N9|A5G9N9_GEOUR Sensor protein OS=Geobacter uraniireducens (strain Rf4)
Align length 39
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916139|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_F02.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5G9N9|A5G9N9_GEOUR Sensor protein OS=Geobacter uraniireducen...    35   1.9  

>tr|A5G9N9|A5G9N9_GEOUR Sensor protein OS=Geobacter uraniireducens
           (strain Rf4) GN=Gura_4364 PE=4 SV=1
          Length = 517

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 273 YIIMWSVHYDCRKGRLPLDPFNVWGAQTWCHNAEGVYVI 157
           Y+ +W+  Y   +G L + PFNV G   W +  +G Y I
Sbjct: 122 YMYVWASSYKHDRGTLTMHPFNVEGVNEWNYQVKGRYTI 160