BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916141|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_F04.
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6GW65|UVRC_FLAPJ UvrABC system protein C OS=Flavobacterium p...    27   4.5  
sp|Q8CB44|GRAM4_MOUSE GRAM domain-containing protein 4 OS=Mus mu...    29   6.3  

>sp|A6GW65|UVRC_FLAPJ UvrABC system protein C OS=Flavobacterium
           psychrophilum (strain JIP02/86 / ATCC 49511) GN=uvrC
           PE=3 SV=1
          Length = 599

 Score = 26.6 bits (57), Expect(2) = 4.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 TMLSLIPRIKCFKYRELPKRENLSDLIMVT 190
           TML+LI   K  K  +L K + +SDLI ++
Sbjct: 556 TMLTLIKHFKSVKRLKLAKEKEISDLIGIS 585



 Score = 22.7 bits (47), Expect(2) = 4.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 24  FSITLHKDKASKRETLSAI 80
           F IT H+DK SK    S+I
Sbjct: 528 FGITFHRDKRSKAALNSSI 546


>sp|Q8CB44|GRAM4_MOUSE GRAM domain-containing protein 4 OS=Mus
           musculus GN=Gramd4 PE=2 SV=1
          Length = 633

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 50  GLQERNP*RHILVRFILTMLSLIPRIKCFKYRELPKRENLSDL-----IMVTYCVIELAL 214
           GL  R P RH+ VR    +L+++ R+   ++R   KRE+L DL        T C  E+ L
Sbjct: 31  GLSGREPPRHVQVRPRSAVLNMLRRLDRIRFRG-HKREDLLDLAESPNASDTECGDEIPL 89

Query: 215 VSP 223
            +P
Sbjct: 90  KTP 92

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916141|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_F04.
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******