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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916149
Clone id YMU001_000083_G04
Library
Length 379
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAATTGTATTCAGGTGCTCGATTGACTAATCGTGCCATAATATGCTGAAAAGGCGACGT
GGCCAGATCGTCCGTGTAATCCACAAAACTGCGGTCCTATGCATTAAGTTATAAACAAGA
ATCTCGTAAGGGCTTAGGCCCTTGAGGCTGCCAAGTGATGATATACCAATGTGGCAAAAT
GGTAGTGGTGTGAGCAGCAGCACTTGCCTCTCTTGGATGTAACTGAGTTTTATGCATTCT
TGAAATGCAGGATGTAACTGAGTTATATACATTCTTGAAATGCACTTTGAACCTTGGTGT
ATCCATGATACCGCTCTACATTCACATACGGGTTGAATCCCGCCCAAAAATGAAGCGCTT
GCTCCAATCAAAGATTACC
■■Homology search results ■■ -
sp_hit_id P04443
Definition sp|P04443|HBB0_MOUSE Hemoglobin subunit beta-H0 OS=Mus musculus
Align length 84
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916149|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G04.
         (379 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04443|HBB0_MOUSE Hemoglobin subunit beta-H0 OS=Mus musculus ...    30   2.8  
sp|Q9H0R1|CN108_HUMAN Uncharacterized protein C14orf108 OS=Homo ...    30   3.7  
sp|Q2KPA3|HBB_SCAOR Hemoglobin subunit beta OS=Scapanus orarius ...    30   4.8  
sp|Q45XH8|HBG_LOXAF Hemoglobin subunit gamma OS=Loxodonta africa...    29   6.3  
sp|Q45XH7|HBG_ELEMA Hemoglobin subunit gamma OS=Elephas maximus ...    29   6.3  
sp|P02061|HBB_TALEU Hemoglobin subunit beta OS=Talpa europaea GN...    29   6.3  
sp|Q6CM10|SEC16_KLULA COPII coat assembly protein SEC16 OS=Kluyv...    29   8.2  

>sp|P04443|HBB0_MOUSE Hemoglobin subunit beta-H0 OS=Mus musculus
           GN=Hbb-bh0 PE=2 SV=5
          Length = 147

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
 Frame = -2

Query: 378 VIFDWSKRFI--FGRDSTRM*M*SGIMDTPRFKVHFKNVYNSVTSCISRM--------HK 229
           +++ W++RF   FG  S+       IM  PR K H K V  S+   +  M        H 
Sbjct: 34  IVYPWTQRFFDKFGNLSSAQ----AIMGNPRIKAHGKKVLTSLGLAVKNMDNLKETFAHL 89

Query: 228 TQLHPREASAAAHTTTILPHWYII 157
           ++LH  +  A      +L +  +I
Sbjct: 90  SELHCDKLHADPENFKLLGNMLVI 113


>sp|Q9H0R1|CN108_HUMAN Uncharacterized protein C14orf108 OS=Homo
           sapiens GN=C14orf108 PE=2 SV=2
          Length = 490

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 303 DTPRFKVHFKNVYNSVTSCISRMHKTQLHPR-EASAAAHTTTILPHWYIITWQPQGPKPL 127
           +T   K+HF+ +  ++T C +  H  Q+    +   +AH   I   +YI  W  + P P+
Sbjct: 426 ETAYLKLHFRILDYTLTGCYADQHSVQVFASGKPKISAHRKLISSDYYI--WNSKAPAPV 483


>sp|Q2KPA3|HBB_SCAOR Hemoglobin subunit beta OS=Scapanus orarius
           GN=HBB PE=2 SV=3
          Length = 147

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 378 VIFDWSKRFI--FGRDSTRM*M*SGIMDTPRFKVHFKNVYNSVTSCISRM 235
           V++ W++RF   FG  S+       IM  P+ K H K V NS++  I  +
Sbjct: 34  VVYPWTQRFFDSFGDLSSA----GAIMGNPKVKAHGKKVANSISDGIKNL 79


>sp|Q45XH8|HBG_LOXAF Hemoglobin subunit gamma OS=Loxodonta africana
           GN=HBG PE=2 SV=2
          Length = 147

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 378 VIFDWSKRFI--FGRDSTRM*M*SGIMDTPRFKVHFKNVYNSVTSCISRM 235
           V++ W++RF   FG  S+     S IM  PR K H K V  S    +  +
Sbjct: 34  VVYPWTQRFFDTFGNLSSA----SAIMGNPRVKAHGKKVLTSFGDAVKNL 79


>sp|Q45XH7|HBG_ELEMA Hemoglobin subunit gamma OS=Elephas maximus
           GN=HBG PE=2 SV=3
          Length = 147

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 378 VIFDWSKRFI--FGRDSTRM*M*SGIMDTPRFKVHFKNVYNSVTSCISRM 235
           V++ W++RF   FG  S+     S IM  PR K H K V  S    +  +
Sbjct: 34  VVYPWTQRFFDTFGNLSSA----SAIMGNPRVKAHGKKVLTSFGDAVKNL 79


>sp|P02061|HBB_TALEU Hemoglobin subunit beta OS=Talpa europaea
           GN=HBB PE=1 SV=1
          Length = 146

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 378 VIFDWSKRFI--FGRDSTRM*M*SGIMDTPRFKVHFKNVYNSVTSCISRM 235
           V++ W++RF   FG  S+     S IM   + K H K V NS+T  +  +
Sbjct: 33  VVYPWTQRFFDSFGDLSSA----SAIMGNAKVKAHGKKVANSITDGVKNL 78


>sp|Q6CM10|SEC16_KLULA COPII coat assembly protein SEC16
            OS=Kluyveromyces lactis GN=SEC16 PE=3 SV=1
          Length = 2082

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -2

Query: 258  VTSCISRMHKTQLHPREASAAAHTTTILPHWYI---ITWQPQGPKPLRD 121
            +T  ++R H  QL    +S    TT ILP   +    T    GP PLRD
Sbjct: 1356 LTPALNRSHINQLQSNNSSLIKSTTKILPASSLPSRETHSKYGPPPLRD 1404
tr_hit_id A9SCF4
Definition tr|A9SCF4|A9SCF4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 18
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916149|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G04.
         (379 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SCF4|A9SCF4_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.13 
tr|A9RYZ0|A9RYZ0_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.13 
tr|A9SIL4|A9SIL4_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.3  
tr|Q655G1|Q655G1_ORYSJ Os06g0684000 protein OS=Oryza sativa subs...    33   7.0  
tr|B8B1S0|B8B1S0_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|A7R8P6|A7R8P6_VITVI Chromosome undetermined scaffold_2814, wh...    33   7.0  
tr|A7QYI2|A7QYI2_VITVI Chromosome undetermined scaffold_247, who...    33   7.0  
tr|A7Q376|A7Q376_VITVI Chromosome chr12 scaffold_47, whole genom...    33   7.0  
tr|A5C820|A5C820_VITVI Putative uncharacterized protein OS=Vitis...    33   7.0  
tr|A5BWF5|A5BWF5_VITVI Putative uncharacterized protein OS=Vitis...    33   7.0  
tr|A7Q378|A7Q378_VITVI Chromosome chr12 scaffold_47, whole genom...    33   9.1  

>tr|A9SCF4|A9SCF4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_183387 PE=4 SV=1
          Length = 579

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           VIFDW+KRF+FGRDS+RM
Sbjct: 562 VIFDWTKRFVFGRDSSRM 579


>tr|A9RYZ0|A9RYZ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_179555 PE=4 SV=1
          Length = 639

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           VIFDW+KRF+FGRDS+RM
Sbjct: 622 VIFDWTKRFVFGRDSSRM 639


>tr|A9SIL4|A9SIL4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_130383 PE=4 SV=1
          Length = 553

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           V+FDW+KR  FGRDS+R+
Sbjct: 535 VVFDWTKRMFFGRDSSRV 552


>tr|Q655G1|Q655G1_ORYSJ Os06g0684000 protein OS=Oryza sativa subsp.
           japonica GN=P0009H10.17-1 PE=4 SV=1
          Length = 588

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           V+ DW++RFIFGRDS+R+
Sbjct: 571 VVSDWTRRFIFGRDSSRI 588


>tr|B8B1S0|B8B1S0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24219 PE=4 SV=1
          Length = 588

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           V+ DW++RFIFGRDS+R+
Sbjct: 571 VVSDWTRRFIFGRDSSRI 588


>tr|A7R8P6|A7R8P6_VITVI Chromosome undetermined scaffold_2814, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012032001 PE=4 SV=1
          Length = 311

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           VI DW++RF+FGRDS+R+
Sbjct: 294 VISDWTRRFVFGRDSSRI 311


>tr|A7QYI2|A7QYI2_VITVI Chromosome undetermined scaffold_247, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009744001 PE=4 SV=1
          Length = 583

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           VI DW++RF+FGRDS+R+
Sbjct: 566 VISDWTRRFVFGRDSSRI 583


>tr|A7Q376|A7Q376_VITVI Chromosome chr12 scaffold_47, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029178001
           PE=4 SV=1
          Length = 577

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           V+ DW++RFIFGRDS+R+
Sbjct: 560 VVSDWTRRFIFGRDSSRI 577


>tr|A5C820|A5C820_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016566 PE=4 SV=1
          Length = 618

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           VI DW++RF+FGRDS+R+
Sbjct: 601 VISDWTRRFVFGRDSSRI 618


>tr|A5BWF5|A5BWF5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027063 PE=4 SV=1
          Length = 578

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = -2

Query: 378 VIFDWSKRFIFGRDSTRM 325
           V+ DW++RFIFGRDS+R+
Sbjct: 561 VVSDWTRRFIFGRDSSRI 578