NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916150
Clone id YMU001_000083_G05
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCAGTGAACCAAATCTATACATTGTTGTGGTTTTGTCCATTGGATTGTCAGAGCAAAGAA
TGATTAGGTGTGACATTGTCACCTACATTCTGGAAAATCTGGTCGATGCAAACCTAAAGA
ACAACAACAGAAACAAAACATATATGAATGGGGGACCATTGTTGATTGGAATTGCATACC
AGGATTTGGGCATGATTGATGAGCTACCCCCGACCGAAACATAGCTAGAATTGCTACATA
AATCAAAGCAAGTGAGACTAGTGGCAAGGCCCTCAGCAATGCAACCCCCAAAGAAAGCAA
CTGGACAGAGTTCAAAAAGGAAAAAGTTAGATATCGAGAAAATTGAGTCTAATATAAACC
TCAATGGGGAGATCAAGCCCAAGAATAGGGACACTCTATATGAATACCAAAGTTCTGAAG
AGGAAGAAGATGAT
■■Homology search results ■■ -
sp_hit_id P62134
Definition sp|P62134|RAD50_METMP DNA double-strand break repair rad50 ATPase OS=Methanococcus maripaludis
Align length 39
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916150|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G05.
         (419 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62134|RAD50_METMP DNA double-strand break repair rad50 ATPas...    30   4.9  
sp|Q49LS5|XK_PANTR Membrane transport protein XK OS=Pan troglody...    29   6.4  
sp|P51811|XK_HUMAN Membrane transport protein XK OS=Homo sapiens...    29   6.4  
sp|P58002|IF2_LACLA Translation initiation factor IF-2 OS=Lactoc...    29   6.4  
sp|Q5ASK9|U383_EMENI Putative methyltransferase UPF0383 OS=Emeri...    29   8.4  
sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase...    29   8.4  
sp|Q8WTZ4|CA5BL_HUMAN Putative carbonic anhydrase 5B-like protei...    29   8.4  

>sp|P62134|RAD50_METMP DNA double-strand break repair rad50 ATPase
           OS=Methanococcus maripaludis GN=rad50 PE=3 SV=1
          Length = 993

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +3

Query: 291 KKATGQSSKRKKL-----DIEKIESNINLNGEIKPKNRD 392
           KK   ++ ++ KL     D EKIE  INL  E+K K  D
Sbjct: 423 KKLQNETDEKTKLISELTDFEKIEEKINLENELKEKYED 461


>sp|Q49LS5|XK_PANTR Membrane transport protein XK OS=Pan troglodytes
           GN=XK PE=2 SV=1
          Length = 444

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -2

Query: 412 LWYSYRVSLFLGLISPLRFILDSIFSISNFFLFELCPVAFFGGC-------IAEGLATSL 254
           LWY ++  +++ + +PL  +L  +       LF L    FF  C       ++EG    L
Sbjct: 334 LWYLFKTDIYMYVCAPL-LVLQLLIGYCTAILFMLVFYQFFHPCKKLFSSSVSEGFQRWL 392

Query: 253 TCF 245
            CF
Sbjct: 393 RCF 395


>sp|P51811|XK_HUMAN Membrane transport protein XK OS=Homo sapiens
           GN=XK PE=1 SV=5
          Length = 444

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -2

Query: 412 LWYSYRVSLFLGLISPLRFILDSIFSISNFFLFELCPVAFFGGC-------IAEGLATSL 254
           LWY ++  +++ + +PL  +L  +       LF L    FF  C       ++EG    L
Sbjct: 334 LWYLFKTDIYMYVCAPL-LVLQLLIGYCTAILFMLVFYQFFHPCKKLFSSSVSEGFQRWL 392

Query: 253 TCF 245
            CF
Sbjct: 393 RCF 395


>sp|P58002|IF2_LACLA Translation initiation factor IF-2
           OS=Lactococcus lactis subsp. lactis GN=infB PE=3 SV=1
          Length = 944

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 267 RPSAMQPPKKATGQSSKRKKLDIEKIESNINL---NGEIKPKN 386
           +P A +P KKA  +   + +  +EK+E+  N      E+KP+N
Sbjct: 128 KPKASEPVKKAEPKVEAKSEPKVEKVETKDNTATSKAEVKPEN 170


>sp|Q5ASK9|U383_EMENI Putative methyltransferase UPF0383
           OS=Emericella nidulans GN=AN8721 PE=3 SV=1
          Length = 606

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 264 ARPSAMQPPKKATGQSSKRKKLDIEKIESNINLNGEIKPKNRDT 395
           ARPSA Q P+K  G++    + +    E      GE K KN +T
Sbjct: 546 ARPSATQNPQKQQGENGTHSQDEEGSSEDMKERKGEEKEKNPET 589


>sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase A
           OS=Dictyostelium discoideum GN=dhkA PE=1 SV=1
          Length = 2150

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 111 NLKNNNRNKTYMNGGPLLIGIAYQDLGM 194
           N  NNN N  Y NG  +++   +Q +GM
Sbjct: 718 NNNNNNNNNNYHNGATMMMSHNHQSIGM 745


>sp|Q8WTZ4|CA5BL_HUMAN Putative carbonic anhydrase 5B-like protein
           OS=Homo sapiens GN=CA5BL PE=2 SV=2
          Length = 195

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 158 IVDWNCIPGFGHD**ATPDRNIARIAT*IKASETSGKALSNATPK 292
           +V WN +     +  A  +  +A I   +K SETSG  +S   PK
Sbjct: 30  LVHWNAVKFENFEDAALEENGLAVIGVFLKISETSGSPVSTGRPK 74
tr_hit_id A9BC12
Definition tr|A9BC12|A9BC12_PROM4 Aminoacyl-tRNA hydrolase OS=Prochlorococcus marinus (strain MIT 9211)
Align length 45
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916150|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G05.
         (419 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9BC12|A9BC12_PROM4 Aminoacyl-tRNA hydrolase OS=Prochlorococc...    34   4.1  
tr|B6HK52|B6HK52_PENCH Pc21g11320 protein OS=Penicillium chrysog...    34   4.1  
tr|B2QCN0|B2QCN0_9BACL Cobalt transport protein OS=Exiguobacteri...    33   7.0  

>tr|A9BC12|A9BC12_PROM4 Aminoacyl-tRNA hydrolase OS=Prochlorococcus
           marinus (strain MIT 9211) GN=P9211_14431 PE=4 SV=1
          Length = 142

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = +3

Query: 273 SAMQPPKKATGQS-----SKRKKLDIEKIESNINLNGEIKPKNRD 392
           S ++PPKK   Q+     SK+++LD++K  SN   N ++KP   D
Sbjct: 98  STLKPPKKLRKQTKPSLASKKRRLDLKKQRSNKKKNRQVKPSLED 142


>tr|B6HK52|B6HK52_PENCH Pc21g11320 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc21g11320 PE=4 SV=1
          Length = 445

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +3

Query: 258 LVARPSAMQPPKKATGQSSKRKKLDIEKIESNINLNGEIKPKNRDTLYEYQSS 416
           L+AR +A    K AT       +L  +  E    LNGE+ P+N D LY Y  S
Sbjct: 19  LIARAAA----KDATKDHDSASELYSQATELQAELNGELSPENADLLYAYGKS 67


>tr|B2QCN0|B2QCN0_9BACL Cobalt transport protein OS=Exiguobacterium
           sp. AT1b GN=EAT1bDRAFT_1804 PE=4 SV=1
          Length = 263

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = -2

Query: 412 LWYSYRVSLFLGLISPLRFILDSIFSISNFFLFELCPVAFFGGCIAEGLATSLTCFDL 239
           LW   R+ LFL + +    IL  +F+     LFEL P+A +   I  GL  SL  F L
Sbjct: 62  LWNGLRMILFLIVFT---LILQLLFNRDGTLLFELGPIAIYSEGIRMGLIVSLRFFYL 116