BP916152
Clone id YMU001_000083_G10
Library
Length 373
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTCAGAATCGAACCCAAATCCCTCAAGAGTGCCTTCTACCATTGTCTCCGTCTCGAAGAT
GTTTCCACTTGGTTGTAGCTGAACAAAATCATTCATGATTGCTTCCACCTTAGCCTCTGA
TTGCCCAACATTTACCACTAAAAAGGTATTGGAAGGAATAATTGTTGCCTTGTAAAGGAT
GCCTTTCAAGTCTAGAAGAAAGTCATTGTCATTTGCAGACACGTTAATACGACCAACAGC
ACCAACATCACCACTTACATCTAGATCGTCTCCTTCACATTCTAGAAGGACCTTGGACCT
GTGAATTTTGTCCCCTACTACTAATGGTAGAGTCGACACAACACGTTTAATTCGCCGTTC
TTGCCCTTCACCA
■■Homology search results ■■ -
sp_hit_id Q9FLU1
Definition sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis thaliana
Align length 129
Score (bit) 127.0
E-value 2.0e-29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916152|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G10.
(373 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis tha... 127 2e-29
sp|Q18H54|SYT_HALWD Threonyl-tRNA synthetase OS=Haloquadratum wa... 30 4.9
sp|P15390|SCN4A_RAT Sodium channel protein type 4 subunit alpha ... 30 4.9
sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alph... 30 4.9
sp|Q9ZXD8|VLYS_BPPH1 Probable holin OS=Bacillus phage phi105 GN=... 29 6.3
sp|P46151|MTHR1_YEAST Methylenetetrahydrofolate reductase 1 OS=S... 29 6.3

>sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis
thaliana GN=BIN4 PE=1 SV=1
Length = 531

Score = 127 bits (318), Expect = 2e-29
Identities = 71/129 (55%), Positives = 88/129 (68%), Gaps = 17/129 (13%)
Frame = -2

Query: 336 STLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDNDFLLDLKG--ILYK-- 169
S LPLV+ +K++R+KVL+ECEGD +D+SGD+GAVGR+ VS D LDLK LY
Sbjct: 333 SRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTTGDMYLDLKEHFALYVFS 392

Query: 168 ------------ATII-PSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGT 28
TII S+ VNVGQ+EAK+EAIMNDF+QL P N++E ETMVEGT
Sbjct: 393 SSCTFSDCKGTCGTIIHTSDLVFQVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGT 452

Query: 27 LEGFGFDSD 1
LEGF F+SD
Sbjct: 453 LEGFTFESD 461


>sp|Q18H54|SYT_HALWD Threonyl-tRNA synthetase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=thrS PE=3 SV=1
Length = 642

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Frame = -2

Query: 279 CEGDDLDVSGDVGAVGRINVSA------NDNDFLLDLKGILYKA 166
C+G +D +G++GA+ +N+S+ DND L + G +++
Sbjct: 181 CQGPHVDSTGEIGAITLLNISSAYWRGDEDNDTLTRVYGAAFES 224


>sp|P15390|SCN4A_RAT Sodium channel protein type 4 subunit alpha
OS=Rattus norvegicus GN=Scn4a PE=2 SV=1
Length = 1840

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2

Query: 354 RIKRVVSTLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAV 235
+IK + LP+V GDKIH +L + L SG++ A+
Sbjct: 1651 KIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDAL 1690


>sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha
OS=Homo sapiens GN=SCN4A PE=1 SV=3
Length = 1836

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2

Query: 354 RIKRVVSTLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAV 235
+IK + LP+V GDKIH +L + L SG++ A+
Sbjct: 1658 KIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDAL 1697


>sp|Q9ZXD8|VLYS_BPPH1 Probable holin OS=Bacillus phage phi105 GN=45
PE=3 SV=1
Length = 135

Score = 29.3 bits (64), Expect = 6.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -2

Query: 222 VSANDNDFLLDLKGILYKATII----PSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIF 55
+ AN D ++DL G+L AT++ + N+ Q K+ A++ D + + S N
Sbjct: 66 IVANAIDTIMDLNGVLTFATVLFYIANEGLSITENLAQIGVKIPAVITDRLHVIESDNDQ 125

Query: 54 ETE 46
+TE
Sbjct: 126 KTE 128


>sp|P46151|MTHR1_YEAST Methylenetetrahydrofolate reductase 1
OS=Saccharomyces cerevisiae GN=MET12 PE=1 SV=2
Length = 657

Score = 29.3 bits (64), Expect = 6.3
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = -2

Query: 360 ERRIKRVVSTLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDNDFLLD 190
E+ I ++VS P V+ ++ S E EG+D + SG++G++ + + D D +LD
Sbjct: 291 EKAIAQIVSQSP-VLSHIVNESS---EEEGED-ETSGEIGSIENVPIEDADGDIVLD 342


tr_hit_id B8A8S7
Definition tr|B8A8S7|B8A8S7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 117
Score (bit) 160.0
E-value 4.0e-38
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916152|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G10.
(373 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8A8S7|B8A8S7_ORYSI Putative uncharacterized protein OS=Oryza... 160 4e-38
tr|B6TBE7|B6TBE7_MAIZE Putative uncharacterized protein OS=Zea m... 157 2e-37
tr|Q6Z2Y2|Q6Z2Y2_ORYSJ Putative uncharacterized protein OJ1008_C... 156 6e-37
tr|Q0E3Y8|Q0E3Y8_ORYSJ Os02g0147700 protein OS=Oryza sativa subs... 156 6e-37
tr|B8AHR4|B8AHR4_ORYSI Putative uncharacterized protein OS=Oryza... 155 7e-37
tr|A9RVJ7|A9RVJ7_PHYPA Predicted protein OS=Physcomitrella paten... 155 9e-37
tr|A7QES6|A7QES6_VITVI Chromosome chr16 scaffold_86, whole genom... 154 2e-36
tr|A9SY45|A9SY45_PHYPA Predicted protein OS=Physcomitrella paten... 152 6e-36
tr|Q0E3Z3|Q0E3Z3_ORYSJ Os02g0147100 protein OS=Oryza sativa subs... 134 2e-30
tr|Q6Z2Y3|Q6Z2Y3_ORYSJ Putative uncharacterized protein OJ1008_C... 126 5e-28
tr|Q6Z2Y8|Q6Z2Y8_ORYSJ Putative uncharacterized protein OJ1008_C... 103 6e-21
tr|A5BH12|A5BH12_VITVI Putative uncharacterized protein (Fragmen... 96 9e-19
tr|A8I486|A8I486_CHLRE Predicted protein OS=Chlamydomonas reinha... 61 3e-08
tr|A4RY36|A4RY36_OSTLU Predicted protein OS=Ostreococcus lucimar... 58 2e-07
tr|Q018F6|Q018F6_OSTTA Chromosome 05 contig 1, DNA sequence OS=O... 56 8e-07
tr|B7FV19|B7FV19_PHATR Predicted protein OS=Phaeodactylum tricor... 49 9e-05
tr|B8LBP4|B8LBP4_THAPS Predicted protein OS=Thalassiosira pseudo... 48 3e-04
tr|B1C8D7|B1C8D7_9FIRM Sensor protein OS=Anaerofustis stercoriho... 37 0.49
tr|B7ARA5|B7ARA5_9BACE Putative uncharacterized protein OS=Bacte... 34 3.2
tr|B5Y6Q5|B5Y6Q5_COPPD Protease OS=Coprothermobacter proteolytic... 33 5.4
tr|B3PNJ0|B3PNJ0_MYCA5 Hypothetical lipoprotein OS=Mycoplasma ar... 33 5.4
tr|A9DNE3|A9DNE3_9FLAO Putative uncharacterized protein OS=Kordi... 33 5.4
tr|Q2SR54|Q2SR54_MYCCT Magnesium-transporting ATPase, E1-E2 fami... 33 7.0
tr|A4J8P9|A4J8P9_DESRM Efflux transporter, RND family, MFP subun... 33 7.0
tr|Q23WR1|Q23WR1_TETTH Putative uncharacterized protein OS=Tetra... 33 7.0

>tr|B8A8S7|B8A8S7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05068 PE=4 SV=1
Length = 473

Score = 160 bits (404), Expect = 4e-38
Identities = 76/117 (64%), Positives = 96/117 (82%), Gaps = 3/117 (2%)
Frame = -2

Query: 342 VVSTLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDN---DFLLDLKGILY 172
V LPL++ DK+ RSK L+EC+GD +D+SGDVGAVGRI +S + N D LLDLKG +Y
Sbjct: 289 VSQRLPLIIPDKVQRSKALIECDGDSIDLSGDVGAVGRIVISNSPNGNQDLLLDLKGTIY 348

Query: 171 KATIIPSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLEGFGFDSD 1
K+TI+PS TF VV+VGQ+EAK+E+IMNDF+QL+P N+FE ETMVEGTL+GF FDSD
Sbjct: 349 KSTIVPSRTFCVVSVGQTEAKIESIMNDFIQLEPQSNLFEAETMVEGTLDGFTFDSD 405


>tr|B6TBE7|B6TBE7_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 364

Score = 157 bits (398), Expect = 2e-37
Identities = 77/117 (65%), Positives = 92/117 (78%), Gaps = 3/117 (2%)
Frame = -2

Query: 342 VVSTLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDN---DFLLDLKGILY 172
V LPL+ DK+ RSK L+EC+GD +D+SGD+GAVGRI VS D LLDLKG +Y
Sbjct: 179 VSQRLPLIFPDKVQRSKALIECDGDSIDLSGDIGAVGRIVVSNGPTAKQDLLLDLKGTIY 238

Query: 171 KATIIPSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLEGFGFDSD 1
K TI+PS TF VV+VGQSEAK+EAIMNDF+QL+P N+FE ETMVEGTL+GF FDSD
Sbjct: 239 KTTIVPSRTFCVVSVGQSEAKIEAIMNDFIQLEPQSNLFEAETMVEGTLDGFTFDSD 295


>tr|Q6Z2Y2|Q6Z2Y2_ORYSJ Putative uncharacterized protein
OJ1008_C03.26-1 (Putative uncharacterized protein)
(Putative uncharacterized protein P0479D12.5-1) OS=Oryza
sativa subsp. japonica GN=OJ1008_C03.26-1 PE=4 SV=1
Length = 320

Score = 156 bits (394), Expect = 6e-37
Identities = 77/127 (60%), Positives = 102/127 (80%), Gaps = 4/127 (3%)
Frame = -2

Query: 369 EGQERRIKRVVST-LPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDN---D 202
E Q++ + VS LPL++ DKI RSK L+EC+GD +D+SGDVGAVGRI +S + N +
Sbjct: 126 EMQDKLTEHSVSQRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQE 185

Query: 201 FLLDLKGILYKATIIPSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLE 22
LLDLKG +YK+TI+PS TF VV+VGQ+EAK+E+IM+DF+QL+P N+FE ETM+EGTL+
Sbjct: 186 LLLDLKGTIYKSTIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMMEGTLD 245

Query: 21 GFGFDSD 1
GF FDSD
Sbjct: 246 GFTFDSD 252


>tr|Q0E3Y8|Q0E3Y8_ORYSJ Os02g0147700 protein OS=Oryza sativa subsp.
japonica GN=Os02g0147700 PE=2 SV=1
Length = 342

Score = 156 bits (394), Expect = 6e-37
Identities = 77/127 (60%), Positives = 102/127 (80%), Gaps = 4/127 (3%)
Frame = -2

Query: 369 EGQERRIKRVVST-LPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDN---D 202
E Q++ + VS LPL++ DKI RSK L+EC+GD +D+SGDVGAVGRI +S + N +
Sbjct: 148 EMQDKLTEHSVSQRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQE 207

Query: 201 FLLDLKGILYKATIIPSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLE 22
LLDLKG +YK+TI+PS TF VV+VGQ+EAK+E+IM+DF+QL+P N+FE ETM+EGTL+
Sbjct: 208 LLLDLKGTIYKSTIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMMEGTLD 267

Query: 21 GFGFDSD 1
GF FDSD
Sbjct: 268 GFTFDSD 274


>tr|B8AHR4|B8AHR4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05847 PE=4 SV=1
Length = 342

Score = 155 bits (393), Expect = 7e-37
Identities = 74/117 (63%), Positives = 96/117 (82%), Gaps = 3/117 (2%)
Frame = -2

Query: 342 VVSTLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDN---DFLLDLKGILY 172
V LPL++ DKI RSK L+EC+GD +D+SGDVGAVGRI +S + N + LLDLKG +Y
Sbjct: 158 VSQRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIY 217

Query: 171 KATIIPSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLEGFGFDSD 1
K+TI+PS TF VV+VGQ+EAK+E+IM+DF+QL+P N+FE ETM+EGTL+GF FDSD
Sbjct: 218 KSTIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMMEGTLDGFTFDSD 274


>tr|A9RVJ7|A9RVJ7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_161308 PE=4 SV=1
Length = 373

Score = 155 bits (392), Expect = 9e-37
Identities = 77/124 (62%), Positives = 100/124 (80%), Gaps = 3/124 (2%)
Frame = -2

Query: 363 QERRIK---RVVSTLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDNDFLL 193
QERRIK S+LP+V G+K++++KVLLECEGD LD+SGD+GAVGR V+ DN+ LL
Sbjct: 162 QERRIKPRASAASSLPIVFGEKVNKTKVLLECEGDALDLSGDMGAVGRFTVNRRDNELLL 221

Query: 192 DLKGILYKATIIPSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLEGFG 13
DLKG++YK TI+PSNTF +VNVGQ++AKVE+IM+DFVQL+ E ET+VEGTL+ F
Sbjct: 222 DLKGVIYKTTIVPSNTFFLVNVGQTDAKVESIMSDFVQLRADTIGKENETVVEGTLQDFT 281

Query: 12 FDSD 1
F+SD
Sbjct: 282 FESD 285


>tr|A7QES6|A7QES6_VITVI Chromosome chr16 scaffold_86, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00037138001
PE=4 SV=1
Length = 262

Score = 154 bits (390), Expect = 2e-36
Identities = 72/118 (61%), Positives = 95/118 (80%), Gaps = 3/118 (2%)
Frame = -2

Query: 345 RVVSTLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRI---NVSANDNDFLLDLKGIL 175
+V S LPLV+ +K+HRSK L+ECEG+ +D+SGD+GAVGRI + + +++ LDLKG +
Sbjct: 91 QVSSGLPLVLSEKVHRSKALVECEGESIDLSGDMGAVGRIVILDTPSRNHEMFLDLKGTI 150

Query: 174 YKATIIPSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLEGFGFDSD 1
YK TI+PS TF +V+ GQSEAKVEA+MNDF+QL+P N++E ETMVEG LEGF FDSD
Sbjct: 151 YKTTIVPSRTFCIVSFGQSEAKVEAVMNDFIQLKPQSNVYEAETMVEGILEGFSFDSD 208


>tr|A9SY45|A9SY45_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_234421 PE=4 SV=1
Length = 379

Score = 152 bits (385), Expect = 6e-36
Identities = 78/124 (62%), Positives = 100/124 (80%), Gaps = 3/124 (2%)
Frame = -2

Query: 363 QERRIK-RVV--STLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDNDFLL 193
QER K RV+ S+LP+V G+K++R+KVLLECEGD LD+SGD+GAVGR V+ D++ LL
Sbjct: 170 QERHSKPRVIAASSLPIVFGEKVNRTKVLLECEGDALDLSGDMGAVGRFTVNRPDDELLL 229

Query: 192 DLKGILYKATIIPSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLEGFG 13
DLKG++YK TI+PSNT+ VVNVGQ EAKVE+IM DF+QL+ + E ETMVEGTL+ F
Sbjct: 230 DLKGVVYKTTIVPSNTYFVVNVGQMEAKVESIMTDFMQLRADTSWNENETMVEGTLKDFA 289

Query: 12 FDSD 1
F+SD
Sbjct: 290 FESD 293


>tr|Q0E3Z3|Q0E3Z3_ORYSJ Os02g0147100 protein OS=Oryza sativa subsp.
japonica GN=Os02g0147100 PE=4 SV=1
Length = 407

Score = 134 bits (338), Expect = 2e-30
Identities = 67/117 (57%), Positives = 87/117 (74%), Gaps = 3/117 (2%)
Frame = -2

Query: 342 VVSTLPLVVGDKIHRSKVLLECEGDDLDVSGDVGAVGRINVSANDN---DFLLDLKGILY 172
V LPL++ DKI RSK L+EC+GD +D+SGDVGAVGRI +S + N + LLDLKG +Y
Sbjct: 241 VSQRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIY 300

Query: 171 KATIIPSNTFLVVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLEGFGFDSD 1
K+TI+PS TF V +E+IM+DF+QL+P N+FE ETM+EGTL+GF FDSD
Sbjct: 301 KSTIVPSRTFCV---------IESIMDDFIQLEPQSNLFEAETMMEGTLDGFTFDSD 348


>tr|Q6Z2Y3|Q6Z2Y3_ORYSJ Putative uncharacterized protein
OJ1008_C03.26-2 (Putative uncharacterized protein
P0479D12.5-2) OS=Oryza sativa subsp. japonica
GN=OJ1008_C03.26-2 PE=4 SV=1
Length = 193

Score = 126 bits (317), Expect = 5e-28
Identities = 64/106 (60%), Positives = 83/106 (78%), Gaps = 7/106 (6%)
Frame = -2

Query: 297 SKVLLECEGDD----LDVSGDVGAVGRINVSANDN---DFLLDLKGILYKATIIPSNTFL 139
S V+L DD +D+SGDVGAVGRI +S + N + LLDLKG +YK+TI+PS TF
Sbjct: 20 STVMLSSGSDDSPDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIYKSTIVPSRTFC 79

Query: 138 VVNVGQSEAKVEAIMNDFVQLQPSGNIFETETMVEGTLEGFGFDSD 1
VV+VGQ+EAK+E+IM+DF+QL+P N+FE ETM+EGTL+GF FDSD
Sbjct: 80 VVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMMEGTLDGFTFDSD 125