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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916153
Clone id YMU001_000083_G11
Library
Length 458
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGGGTAATAGATCCAAGGGCAATGTCCCTATGGAGATGAGTTCTCTCCTCTTTGATTCAT
CATGATGCCAATTTGACTTGGTGGATGGTACCACCTTGTGGTCTCATTGAAGATTGGGAA
TGTGTGCTGCTGGAGTCTTTAGAGCCTGACATATTTTTTTTCAGTAAGTCTTTCAAAGGT
ACATGAGGACCCACATCACAAAGTGAGCAAAATTATCTGCTGTCCATGTCTCTCTTTAGC
AAAAGGATATTTCGAGTATATGTATGTACTATGTAAGTACTCGTTCTTATAATGACATTC
CACCAAAAATGATAGGCACATAGTCTTCATCATGGTTGAGTCGGCCATGCTTCTTTGTAG
GCTCACACATGGTGCCTGTTTGTGCAGGGATTGTATTTGTGAGGGCATATGTTGATACTT
CCACTAGTGTGGATGAGGCGGTTGTAGTATTTCACATT
■■Homology search results ■■ -
sp_hit_id O94666
Definition sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe
Align length 49
Score (bit) 29.3
E-value 8.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916153|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G11.
         (458 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc...    29   8.6  
sp|P18010|IPAA_SHIFL Invasin ipaA OS=Shigella flexneri GN=ipaA P...    29   8.6  

>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1
           OS=Schizosaccharomyces pombe GN=rpc1 PE=2 SV=1
          Length = 1405

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 213 LSAVHVSL*QKDISSICMYYVSTRSYNDIPPKMIGT*SSSWLSRPCFFV 359
           LS     L +K IS+IC Y +   ++ D+PP  I      W  +  F V
Sbjct: 546 LSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCLWTGKQVFTV 594


>sp|P18010|IPAA_SHIFL Invasin ipaA OS=Shigella flexneri GN=ipaA PE=1
           SV=1
          Length = 633

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 420 KYQHMPSQIQSLHKQAPCVSLQRSMAD----STMMKTMCLSFLVECHYKNEYLHSTYIYS 253
           +Y  + S+I  +H     +    S+++    +T     CL FL     K + L S Y  S
Sbjct: 23  EYSELKSKISDIHSSQTSLKTPASVSEKENFATSFNQKCLDFLFSSSGKEDVLRSIYSNS 82

Query: 252 KYPFAK 235
              +AK
Sbjct: 83  MNAYAK 88
tr_hit_id Q9VQ08
Definition tr|Q9VQ08|Q9VQ08_DROME Leak OS=Drosophila melanogaster
Align length 76
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916153|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G11.
         (458 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9VQ08|Q9VQ08_DROME Leak OS=Drosophila melanogaster GN=lea PE...    33   5.4  
tr|Q9GPP7|Q9GPP7_DROME Roundabout 2 OS=Drosophila melanogaster G...    33   5.4  
tr|Q5U176|Q5U176_DROME RE21729p OS=Drosophila melanogaster GN=le...    33   5.4  
tr|Q5JDE7|Q5JDE7_PYRKO Putative uncharacterized protein OS=Pyroc...    33   7.1  

>tr|Q9VQ08|Q9VQ08_DROME Leak OS=Drosophila melanogaster GN=lea PE=1
            SV=2
          Length = 1463

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 444  QPPHPH*WKYQHMPSQIQSLHKQAPCVSLQRSMADSTMMKTMCLSFLVECHYKNEYLHST 265
            +P HPH  + QH   Q Q  H+Q   +   + +  S + + M  +  +   Y      S 
Sbjct: 1191 RPMHPHYQQQQHQQQQAQQTHQQHQALQQHQQLPPSNIYQQMSTTSEI---YPTNTGPSR 1247

Query: 264  YIYSK---YPFAKERH 226
             +YS+   YP  K+RH
Sbjct: 1248 SVYSEQYYYPKDKQRH 1263


>tr|Q9GPP7|Q9GPP7_DROME Roundabout 2 OS=Drosophila melanogaster GN=lea
            PE=2 SV=1
          Length = 1406

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 444  QPPHPH*WKYQHMPSQIQSLHKQAPCVSLQRSMADSTMMKTMCLSFLVECHYKNEYLHST 265
            +P HPH  + QH   Q Q  H+Q   +   + +  S + + M  +  +   Y      S 
Sbjct: 1134 RPMHPHYQQQQHQQQQAQQTHQQHQALQQHQQLPPSNIYQQMSTTSEI---YPTNTGPSR 1190

Query: 264  YIYSK---YPFAKERH 226
             +YS+   YP  K+RH
Sbjct: 1191 SVYSEQYYYPKDKQRH 1206


>tr|Q5U176|Q5U176_DROME RE21729p OS=Drosophila melanogaster GN=lea
            PE=1 SV=1
          Length = 1340

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 444  QPPHPH*WKYQHMPSQIQSLHKQAPCVSLQRSMADSTMMKTMCLSFLVECHYKNEYLHST 265
            +P HPH  + QH   Q Q  H+Q   +   + +  S + + M  +  +   Y      S 
Sbjct: 1068 RPMHPHYQQQQHQQQQAQQTHQQHQALQQHQQLPPSNIYQQMSTTSEI---YPTNTGPSR 1124

Query: 264  YIYSK---YPFAKERH 226
             +YS+   YP  K+RH
Sbjct: 1125 SVYSEQYYYPKDKQRH 1140


>tr|Q5JDE7|Q5JDE7_PYRKO Putative uncharacterized protein
           OS=Pyrococcus kodakaraensis GN=TK2013 PE=4 SV=1
          Length = 860

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -2

Query: 451 NTTTASSTLVEVSTYALTNTIPAQTGTMCEPTKKHGRLNHDEDYVPIIFGGM 296
           +T TA++T     T   TNT    TGT+ E    +G +  DED +PI  G M
Sbjct: 53  DTGTATTTETVTETVTQTNT-ETGTGTVTETPTPNGSVQFDEDGLPICTGDM 103