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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916154
Clone id YMU001_000083_G12
Library
Length 401
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGTGGAAGAATTCGCGGCCGCAGGAATGTTTTTTTAGCCCAAAAATCATCCTTTTCTAC
AGATTAGATAGCCAGTGTAACCCCACCTATTCACAGCATAAGGGAGTCCCTGCTTACATT
ATTAATTACACATCACTTATCGATGCACGCTTACACTGGCAAACCTCCTTGCACATCAGC
AAGAAGCAAAGAAGTGCTTTGCGAACATCTACTAACTCAATTGTCACCTGTCGGAGTTTT
CTTCCCTTGATCTTGACGATGCTTGAGTTGAGTAAGACCTGGAGCAGTAACCTTGGTATT
GCCAATTATCGCTGCTACCAATTCTGGGTCATTCATTGCCTTCATCAGTTCCTTCTCTCT
TGGGGTTGCTTCCAGCATGTGGACAAAGACATTCATTGCTG
■■Homology search results ■■ -
sp_hit_id Q8CCP0
Definition sp|Q8CCP0|SDCG1_MOUSE Serologically defined colon cancer antigen 1 homolog OS=Mus musculus
Align length 48
Score (bit) 45.1
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916154|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G12.
         (365 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CCP0|SDCG1_MOUSE Serologically defined colon cancer antigen...    45   1e-04
sp|O60524|SDCG1_HUMAN Serologically defined colon cancer antigen...    45   1e-04
sp|P30594|CHS1_RHIOL Chitin synthase 1 OS=Rhizopus oligosporus G...    31   2.2  
sp|P17486|EGL5_CAEEL Homeobox protein egl-5 OS=Caenorhabditis el...    29   8.4  

>sp|Q8CCP0|SDCG1_MOUSE Serologically defined colon cancer antigen 1
            homolog OS=Mus musculus GN=Sdccag1 PE=2 SV=2
          Length = 1064

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = -3

Query: 363  AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHR 220
            A+N F+H  EAT REK+L +++ D +L   I G  KV+AP L  +K +
Sbjct: 1017 ALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLHVKRK 1064


>sp|O60524|SDCG1_HUMAN Serologically defined colon cancer antigen 1
            OS=Homo sapiens GN=SDCCAG1 PE=1 SV=3
          Length = 1076

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = -3

Query: 363  AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHR 220
            A+N F+H  EAT REK+L +++ D +L   I G  KV+AP L  +K +
Sbjct: 1029 ALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLNVKRK 1076


>sp|P30594|CHS1_RHIOL Chitin synthase 1 OS=Rhizopus oligosporus
           GN=CHS1 PE=3 SV=1
          Length = 858

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 199 SFLPLILTMLELSKTWSSNLGIANYRCYQFWVIHCLHQFLLSW 327
           SF   I +M+  SK WSSN  I     + F  ++ L+  + SW
Sbjct: 502 SFFAGIYSMVHWSKVWSSNHNILRCIMFMFEDLYQLYNLIFSW 544


>sp|P17486|EGL5_CAEEL Homeobox protein egl-5 OS=Caenorhabditis
           elegans GN=egl-5 PE=2 SV=4
          Length = 223

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 55  SQHKGVPAYIINYTSLIDARLHWQTSLHISKKQRSALRTST 177
           S  KG   Y    TS+++A+  +Q S ++SKKQR  LR  T
Sbjct: 111 SSKKGRQTYQRYQTSVLEAK--FQQSSYVSKKQREELRLQT 149
tr_hit_id A7Q8U8
Definition tr|A7Q8U8|A7Q8U8_VITVI Chromosome chr5 scaffold_64, whole genome shotgun sequence OS=Vitis vinifera
Align length 55
Score (bit) 82.8
E-value 8.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916154|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_G12.
         (365 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q8U8|A7Q8U8_VITVI Chromosome chr5 scaffold_64, whole genome...    83   8e-15
tr|Q9LTX7|Q9LTX7_ARATH Gb|AAF56406.1 OS=Arabidopsis thaliana GN=...    80   7e-14
tr|Q8L9N3|Q8L9N3_ARATH Putative uncharacterized protein OS=Arabi...    80   7e-14
tr|Q761Z7|Q761Z7_ORYSJ BRI1-KD interacting protein 117 (Fragment...    79   1e-13
tr|Q2QNI2|Q2QNI2_ORYSJ Os12g0564600 protein OS=Oryza sativa subs...    79   1e-13
tr|A3CIH4|A3CIH4_ORYSJ Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|A2ZLQ0|A2ZLQ0_ORYSI Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|A9STP2|A9STP2_PHYPA Predicted protein OS=Physcomitrella paten...    75   2e-12
tr|Q5D022|Q5D022_RAT Sdccag1 protein (Fragment) OS=Rattus norveg...    45   0.002
tr|Q3UF46|Q3UF46_MOUSE Putative uncharacterized protein (Fragmen...    45   0.002
tr|Q32Q66|Q32Q66_HUMAN SDCCAG1 protein (Fragment) OS=Homo sapien...    45   0.002
tr|B4E3F3|B4E3F3_HUMAN cDNA FLJ61574, highly similar to Serologi...    45   0.002
tr|B3KSK1|B3KSK1_HUMAN cDNA FLJ36464 fis, clone THYMU2015161, hi...    45   0.002
tr|Q22TC3|Q22TC3_TETTH Putative uncharacterized protein OS=Tetra...    40   0.076
tr|A0CRJ5|A0CRJ5_PARTE Chromosome undetermined scaffold_25, whol...    39   0.099
tr|B6P897|B6P897_BRAFL Putative uncharacterized protein OS=Branc...    39   0.13 
tr|B6NVV7|B6NVV7_BRAFL Putative uncharacterized protein OS=Branc...    39   0.13 
tr|B4NJW5|B4NJW5_DROWI GK13887 OS=Drosophila willistoni GN=GK138...    37   0.38 
tr|Q171H5|Q171H5_AEDAE Putative uncharacterized protein OS=Aedes...    36   1.1  
tr|B4GE19|B4GE19_DROPE GL21904 OS=Drosophila persimilis GN=GL219...    35   1.4  
tr|B0X1V4|B0X1V4_CULQU Serologically defined colon cancer antige...    35   1.4  
tr|Q7PQX6|Q7PQX6_ANOGA AGAP002680-PA OS=Anopheles gambiae GN=AGA...    35   2.4  
tr|A5D6K1|A5D6K1_9MYRI Cytochrome b OS=Bothropolys sp. SP-2004 G...    35   2.4  
tr|A0ACG6|A0ACG6_STRAM Putative amidohydrolase OS=Streptomyces a...    34   3.2  
tr|B7P2V2|B7P2V2_IXOSC Sdccag1 protein, putative OS=Ixodes scapu...    34   3.2  
tr|Q9VBX1|Q9VBX1_DROME Caliban OS=Drosophila melanogaster GN=Clb...    33   5.5  
tr|B4QUC2|B4QUC2_DROSI GD21177 OS=Drosophila simulans GN=GD21177...    33   5.5  
tr|B4IJG9|B4IJG9_DROSE GM17806 OS=Drosophila sechellia GN=GM1780...    33   5.5  
tr|B0E6G2|B0E6G2_ENTDI Putative uncharacterized protein OS=Entam...    33   5.5  
tr|A8E6Q0|A8E6Q0_DROME IP12923p OS=Drosophila melanogaster GN=CG...    33   5.5  

>tr|A7Q8U8|A7Q8U8_VITVI Chromosome chr5 scaffold_64, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00033191001
            PE=4 SV=1
          Length = 1090

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 41/55 (74%), Positives = 46/55 (83%)
 Frame = -3

Query: 363  AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHRQDQGKKT 199
            AMN+F HM EAT REKELMKA  DPELVAAIIGN K+TA GLTQLK +Q +GKK+
Sbjct: 1032 AMNLFSHMPEATSREKELMKACTDPELVAAIIGNVKITAAGLTQLKQKQKKGKKS 1086


>tr|Q9LTX7|Q9LTX7_ARATH Gb|AAF56406.1 OS=Arabidopsis thaliana
            GN=At5g49930 PE=4 SV=1
          Length = 1080

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 37/55 (67%), Positives = 46/55 (83%)
 Frame = -3

Query: 363  AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHRQDQGKKT 199
            AMN+F HM EA+ REKELMKA  DPEL+AA++GN K+TA GLTQLK +Q +GKK+
Sbjct: 1020 AMNLFTHMSEASVREKELMKACTDPELMAALVGNVKITAAGLTQLKQKQKKGKKS 1074


>tr|Q8L9N3|Q8L9N3_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 129

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 37/55 (67%), Positives = 46/55 (83%)
 Frame = -3

Query: 363 AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHRQDQGKKT 199
           AMN+F HM EA+ REKELMKA  DPEL+AA++GN K+TA GLTQLK +Q +GKK+
Sbjct: 69  AMNLFTHMSEASVREKELMKACTDPELMAALVGNVKITAAGLTQLKQKQKKGKKS 123


>tr|Q761Z7|Q761Z7_ORYSJ BRI1-KD interacting protein 117 (Fragment)
           OS=Oryza sativa subsp. japonica GN=bip117 PE=2 SV=1
          Length = 360

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 39/56 (69%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
 Frame = -3

Query: 363 AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHRQDQ-GKKT 199
           AM++F+H  +AT REKELMKA  DPELVAAI+GN K+TAPGLTQLK +Q Q GKK+
Sbjct: 301 AMSLFLHTADATNREKELMKACTDPELVAAIVGNAKITAPGLTQLKQKQKQKGKKS 356


>tr|Q2QNI2|Q2QNI2_ORYSJ Os12g0564600 protein OS=Oryza sativa subsp.
            japonica GN=Os12g0564600 PE=4 SV=2
          Length = 1159

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 39/56 (69%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
 Frame = -3

Query: 363  AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHRQDQ-GKKT 199
            AM++F+H  +AT REKELMKA  DPELVAAI+GN K+TAPGLTQLK +Q Q GKK+
Sbjct: 1100 AMSLFLHTADATNREKELMKACTDPELVAAIVGNAKITAPGLTQLKQKQKQKGKKS 1155


>tr|A3CIH4|A3CIH4_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_035096 PE=4 SV=1
          Length = 1176

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 39/56 (69%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
 Frame = -3

Query: 363  AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHRQDQ-GKKT 199
            AM++F+H  +AT REKELMKA  DPELVAAI+GN K+TAPGLTQLK +Q Q GKK+
Sbjct: 1117 AMSLFLHTADATNREKELMKACTDPELVAAIVGNAKITAPGLTQLKQKQKQKGKKS 1172


>tr|A2ZLQ0|A2ZLQ0_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_38746 PE=4 SV=1
          Length = 1153

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 39/56 (69%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
 Frame = -3

Query: 363  AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHRQDQ-GKKT 199
            AM++F+H  +AT REKELMKA  DPELVAAI+GN K+TAPGLTQLK +Q Q GKK+
Sbjct: 1094 AMSLFLHTADATNREKELMKACTDPELVAAIVGNAKITAPGLTQLKQKQKQKGKKS 1149


>tr|A9STP2|A9STP2_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_135179 PE=4 SV=1
          Length = 1100

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 36/54 (66%), Positives = 42/54 (77%)
 Frame = -3

Query: 363  AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHRQDQGKK 202
            A+++F HM E T REKELMKAM DPEL A +IGN KVTAPG T+LK  Q +GKK
Sbjct: 1041 AVDIFSHMQEITTREKELMKAMTDPELAACMIGNVKVTAPGSTKLKQAQKKGKK 1094


>tr|Q5D022|Q5D022_RAT Sdccag1 protein (Fragment) OS=Rattus
           norvegicus GN=Sdccag1 PE=2 SV=1
          Length = 419

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = -3

Query: 363 AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHR 220
           A+N F+H  EAT REK+L +++ D +L   I G  KV+AP L  +K +
Sbjct: 372 ALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLHVKRK 419


>tr|Q3UF46|Q3UF46_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=Sdccag1 PE=2 SV=1
          Length = 290

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = -3

Query: 363 AMNVFVHMLEATPREKELMKAMNDPELVAAIIGNTKVTAPGLTQLKHR 220
           A+N F+H  EAT REK+L +++ D +L   I G  KV+AP L  +K +
Sbjct: 243 ALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLHVKRK 290