NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916155
Clone id YMU001_000083_H02
Library
Length 404
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000083_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCAACACTGTGATCAGGCTCATCTCTCCAGCATGAAGTCAATCCCTGACATAATGATAA
TGCATTTGAGTGTGCTTGGTGCTAGCATGGAACACTGTGTTGTTTGCAGTTTCCAATGCG
CTCAAACTGTCGAGGGAAACAAAAACAAGGCCTTGGAGATAAACACAATCAGGCACCAGG
GTGAAAGCTGACCCATACTGTGACCCCAATAGGCTACTTCTTGCTAAACCACTAAATGCA
TGAGCTGCCAAGCATGAAGCAAAAACAACTCATGGATAGCGAAACATATGCTTAACTGCA
TACCTATGCTAAGTCGACGTGCTACATAAACATCTCCTCAAGGTGAGACTGCAAGCTTAA
TCCCTCGACTATGCATAAATCTGGTTATATGCCAGACTACAAAT
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 33
Score (bit) 38.5
E-value 0.01
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916155|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_H02.
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    39   0.010
sp|Q36724|COX1_BLAGE Cytochrome c oxidase subunit 1 (Fragment) O...    33   0.44 
sp|P32710|NRFE_ECOLI Cytochrome c-type biogenesis protein nrfE O...    30   4.8  
sp|Q87BE2|TILS_XYLFT tRNA(Ile)-lysidine synthase OS=Xylella fast...    29   6.3  
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    29   6.3  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = -1

Query: 140  VSLDSLSALETANNTVFHASTKHTQMHYHYVRD 42
            V  DS SA++ + N+++HA TKH  + YH++R+
Sbjct: 1253 VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIRE 1285


>sp|Q36724|COX1_BLAGE Cytochrome c oxidase subunit 1 (Fragment)
           OS=Blattella germanica GN=COI PE=2 SV=1
          Length = 508

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = -1

Query: 233 SGLARSSLLGSQYGSAFTLVPDCVYLQGLVFV-SLDSLSALETANNT---VFHASTKHTQ 66
           +G+   S L + YGS  T    C++  G VF+ ++  L+ +  AN++   V H  T +  
Sbjct: 311 TGIKIFSWLATMYGSQLTYSAPCLWALGFVFLFTVGGLTGVVLANSSIDIVLH-DTYYVV 369

Query: 65  MHYHYV 48
            H+HYV
Sbjct: 370 AHFHYV 375


>sp|P32710|NRFE_ECOLI Cytochrome c-type biogenesis protein nrfE
           OS=Escherichia coli (strain K12) GN=nrfE PE=3 SV=2
          Length = 552

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = -2

Query: 295 LSICFAIHELFLLHAWQLMHLVV*QEV---AYWGHSMGQLSPWCLIVFISKALFLFPSTV 125
           L+ CF I +  +++  Q  + ++  E+   A WG   G L  W L++    ALF +    
Sbjct: 40  LTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLWVLLLSAWSALFAW---- 95

Query: 124 *AHWKLQTTQCSMLAPSTLKCIIIM 50
             H++ QT     L P TL  + +M
Sbjct: 96  --HYRQQT---DPLFPLTLAVLSLM 115


>sp|Q87BE2|TILS_XYLFT tRNA(Ile)-lysidine synthase OS=Xylella
           fastidiosa (strain Temecula1 / ATCC 700964) GN=tilS PE=3
           SV=1
          Length = 437

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = -1

Query: 248 AAHAFSGLARSSLLGSQYGSAFTLVPDCVYLQGLVFVSLDSLSALETANNTVFHASTKHT 69
           A H   GL  ++   + + +AF    D       V VS +S   LE A  T   A+  HT
Sbjct: 47  AIHIHHGLNENADAWTAHCAAFCTQHDIRLHIARVHVSHNSGQGLEAAARTARRAAFAHT 106

Query: 68  QMHYHYV 48
             H HY+
Sbjct: 107 LQHGHYL 113


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 185  FTLVPDCVYLQGLVFVSLDSLSALETANNTVFHASTKHTQMHYHYVRD 42
            F L    + L+  + +  D+   +  ANN   H   KH  + YH+ R+
Sbjct: 1313 FLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE 1360
tr_hit_id A5AVX7
Definition tr|A5AVX7|A5AVX7_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 55
Score (bit) 49.3
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916155|Adiantum capillus-veneris mRNA, clone:
YMU001_000083_H02.
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AVX7|A5AVX7_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|Q9SJU6|Q9SJU6_ARATH Putative retroelement pol polyprotein OS=...    48   2e-04
tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein O...    47   5e-04
tr|Q94FM1|Q94FM1_CITPA Pol polyprotein OS=Citrus paradisi GN=pol...    45   0.001
tr|A5B1U5|A5B1U5_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q9FFM0|Q9FFM0_ARATH Copia-like retrotransposable element OS=A...    45   0.002
tr|A5C9T7|A5C9T7_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q25AF6|Q25AF6_ORYSA H0512B01.8 protein OS=Oryza sativa GN=H05...    44   0.003
tr|Q84VI2|Q84VI2_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    37   0.003
tr|Q84VH8|Q84VH8_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    37   0.003
tr|Q84VI4|Q84VI4_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    37   0.003
tr|O65147|O65147_SOYBN Gag-pol polyprotein OS=Glycine max GN=pol...    38   0.003
tr|A6XN12|A6XN12_PRUPE Putative uncharacterized protein OS=Prunu...    44   0.004
tr|A5BTL5|A5BTL5_VITVI Putative uncharacterized protein OS=Vitis...    44   0.004
tr|A5BFR8|A5BFR8_VITVI Putative uncharacterized protein OS=Vitis...    44   0.004
tr|Q9SH77|Q9SH77_ARATH Putative retroelement pol polyprotein OS=...    44   0.005
tr|Q2QVK6|Q2QVK6_ORYSJ Retrotransposon protein, putative, unclas...    44   0.005
tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5BSK1|A5BSK1_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5B979|A5B979_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5B570|A5B570_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|B6QCF0|B6QCF0_PENMA Putative uncharacterized protein OS=Penic...    40   0.007
tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE...    43   0.007
tr|Q6AUP9|Q6AUP9_ORYSJ Putative polyprotein OS=Oryza sativa subs...    43   0.007
tr|B6QJ28|B6QJ28_PENMA Copia protein, putative OS=Penicillium ma...    40   0.007
tr|B6QNU5|B6QNU5_PENMA Putative uncharacterized protein OS=Penic...    40   0.007
tr|A5B0W4|A5B0W4_VITVI Putative uncharacterized protein OS=Vitis...    39   0.007
tr|Q84VI0|Q84VI0_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    36   0.009

>tr|A5AVX7|A5AVX7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004703 PE=4 SV=1
          Length = 777

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = -1

Query: 179 LVPDCVYLQGLVFVSLDSLSALETANNTVFHASTKHTQMHYHYVRD*LHAGEMSL 15
           LV +   L  +V + LDS SA++  NN  FH  TKH  + YH++R+ + +G M L
Sbjct: 684 LVKELXVLNSVVEIFLDSQSAIQLCNNPXFHXRTKHIDVRYHFIRETISSGAMKL 738


>tr|Q9SJU6|Q9SJU6_ARATH Putative retroelement pol polyprotein
           OS=Arabidopsis thaliana GN=At2g21310 PE=2 SV=1
          Length = 838

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = -1

Query: 179 LVPDCVYLQGLVFVSLDSLSALETANNTVFHASTKHTQMHYHYVRD*LHAGEMSLITV 6
           L+ +  + QG V +  DS SA+  A N V H  TKH Q  +HY+RD +  GE+ ++ +
Sbjct: 750 LMNELGFKQGAVDIHCDSQSAIALAKNAVHHERTKHIQRRFHYIRDAITDGEVKVLKI 807


>tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein
            OS=Arabidopsis thaliana GN=At2g19840 PE=2 SV=1
          Length = 1137

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 20/57 (35%), Positives = 35/57 (61%)
 Frame = -1

Query: 176  VPDCVYLQGLVFVSLDSLSALETANNTVFHASTKHTQMHYHYVRD*LHAGEMSLITV 6
            V +  ++Q  V +  DS SA+  A N V+H  TKH  + YH++RD ++ GE+ ++ +
Sbjct: 1050 VSELGFVQKTVNIHCDSQSAIALAKNAVYHERTKHIDVKYHFIRDLVNNGEVQVLKI 1106


>tr|Q94FM1|Q94FM1_CITPA Pol polyprotein OS=Citrus paradisi GN=pol
           PE=4 SV=1
          Length = 297

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
 Frame = -1

Query: 203 SQYGSAFTLVPDCVYLQGL----------VFVSLDSLSALETANNTVFHASTKHTQMHYH 54
           ++Y +A   V + ++L+GL          + V  D+ SA+  A N  +HA TKH  + YH
Sbjct: 190 AEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYHARTKHIDVKYH 249

Query: 53  YVRD*LHAGEMSL 15
           YVR+ +  G++ L
Sbjct: 250 YVREIIEGGDVLL 262


>tr|A5B1U5|A5B1U5_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_005976 PE=4 SV=1
          Length = 1380

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/51 (37%), Positives = 32/51 (62%)
 Frame = -1

Query: 167  CVYLQGLVFVSLDSLSALETANNTVFHASTKHTQMHYHYVRD*LHAGEMSL 15
            CV +  +  +  D++SA   A N VFHA TKH +++ H++RD +  G++ L
Sbjct: 988  CVPIPAIPLLWYDNISAYHMAKNPVFHARTKHIEIYLHFIRDQVMRGKIQL 1038


>tr|Q9FFM0|Q9FFM0_ARATH Copia-like retrotransposable element
            OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1342

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 13/89 (14%)
 Frame = -1

Query: 233  SGLARSSLLGS---QYGSAFTLVPDCVYLQGL----------VFVSLDSLSALETANNTV 93
            SGL R   L +   +Y +    V + ++L+GL          V V  DS SA+  + N+V
Sbjct: 1223 SGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSV 1282

Query: 92   FHASTKHTQMHYHYVRD*LHAGEMSLITV 6
             H  TKH  + YH++R+ +  GE+ ++ +
Sbjct: 1283 HHERTKHIDVRYHFIREKIADGEIQVVKI 1311


>tr|A5C9T7|A5C9T7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_037079 PE=4 SV=1
          Length = 1157

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 24/66 (36%), Positives = 39/66 (59%)
 Frame = -1

Query: 203  SQYGSAFTLVPDCVYLQGLVFVSLDSLSALETANNTVFHASTKHTQMHYHYVRD*LHAGE 24
            ++Y +  T   + V+L+GL    L  LSA++ A N VFH  TKH ++  H +RD L +  
Sbjct: 1061 AEYHAMSTACSEIVWLRGL----LKELSAIQIATNPVFHERTKHIEVDCHSIRDTLESRV 1116

Query: 23   MSLITV 6
            +SL+ +
Sbjct: 1117 ISLLHI 1122


>tr|Q25AF6|Q25AF6_ORYSA H0512B01.8 protein OS=Oryza sativa
            GN=H0512B01.8 PE=4 SV=1
          Length = 1454

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
 Frame = -1

Query: 269  VVFASCLAAH------AFSGLARSSLLGSQYGSAFTLVPDCVYLQGLVFVSLDSLSALET 108
            V  +SC A +      A  G+  + LLG   G      P  + L+      +DS SAL  
Sbjct: 1332 VALSSCEAEYVAATNAATQGIWLARLLGELLGKQ----PKAIELK------VDSKSALAL 1381

Query: 107  ANNTVFHASTKHTQMHYHYVRD*LHAGEM--SLITVL 3
            A N VFH  +KH  + YH++RD L  G +  S IT +
Sbjct: 1382 AKNPVFHERSKHIDLRYHFIRDCLEEGSINASFITTM 1418


>tr|Q84VI2|Q84VI2_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag-pol
            PE=4 SV=1
          Length = 1576

 Score = 37.0 bits (84), Expect(2) = 0.003
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -1

Query: 155  QGLVFVSLDSLSALETANNTVFHASTKHTQMHYHYVRD 42
            Q ++ +  D++SA+  + N V H+ TKH  + +HY+RD
Sbjct: 1493 QDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRD 1530



 Score = 26.6 bits (57), Expect(2) = 0.003
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 276  SMSCFCFMLGSSCI*WFSKK 217
            S S  CF LG++ I WFSKK
Sbjct: 1437 STSGGCFYLGNNLISWFSKK 1456


>tr|Q84VH8|Q84VH8_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag-pol
            PE=4 SV=1
          Length = 1576

 Score = 37.0 bits (84), Expect(2) = 0.003
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -1

Query: 155  QGLVFVSLDSLSALETANNTVFHASTKHTQMHYHYVRD 42
            Q ++ +  D++SA+  + N V H+ TKH  + +HY+RD
Sbjct: 1493 QDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRD 1530



 Score = 26.6 bits (57), Expect(2) = 0.003
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 276  SMSCFCFMLGSSCI*WFSKK 217
            S S  CF LG++ I WFSKK
Sbjct: 1437 STSGGCFYLGNNLISWFSKK 1456