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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916161
Clone id YMU001_000084_A05
Library
Length 504
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGGCAAGAACGATGTTGGCATAACTGATGAAGATTTGGAGTGGATTATGGGAAGAACAGC
AACGGAGCTTTTCAAGGGTGGATGGGTGAAGGGACAGTAGCTGAATGTTTTCTCACCAAC
ACTCCATTTCAACGGACACTCTCATCAAATTTGTTAAGGTTCACTTTACAATTGCCCCCA
GAATAATGCATGTCAGCAGGAAGAGGATGTTCAACCATCGAATTTTCAGTCCATTCCTAT
TCGAGCCAAAGACTAGATCCAAACGCCATGCAGTAATGAGTGCTTTACCAAAAACTTCTT
GAAGGCTCACTTTACAACTGTCTTCGGCAGCAAGAAGAGGATGTTCAACAATCAAATTTA
ATCTCCATTACCATTCGAGCCGAAGACTAAATCCAAACACCATGCTGCTATGATTGAAAG
GAAACAGGCCATCCCTTCTTGTCAATTGTTGATAGACAAGATTTCAGTACTTACCACTAA
ATGCAATAATTAAGAAGTGCAAGT
■■Homology search results ■■ -
sp_hit_id Q54RD4
Definition sp|Q54RD4|DPOE1_DICDI DNA polymerase epsilon catalytic subunit A OS=Dictyostelium discoideum
Align length 104
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916161|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A05.
         (504 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54RD4|DPOE1_DICDI DNA polymerase epsilon catalytic subunit A...    31   2.9  
sp|Q93YU5|EXOC4_ARATH Probable exocyst complex component 4 OS=Ar...    30   8.3  

>sp|Q54RD4|DPOE1_DICDI DNA polymerase epsilon catalytic subunit A
            OS=Dictyostelium discoideum GN=pole PE=3 SV=1
          Length = 2380

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
 Frame = -3

Query: 280  LITAWRLDLVFGSN--RNGLKIRWLNILFL--------LTCIILGAIVK*TLTNLMRVSV 131
            L++ W+LDLV GSN  RN +  R+ N L L            +   I+  TL  LM+  V
Sbjct: 1820 LVSKWKLDLVSGSNSKRNEISSRYSNYLLLHFYRWISSTNSKLYDPILYRTLHQLMK-KV 1878

Query: 130  EMECW*ENIQLLS-LHPSTLEKLRCCSSHNPLQIFISYANIVLA 2
             ++   E  +L S +  +   K+  CS  + ++   SY N +LA
Sbjct: 1879 FIQLIFEFKKLGSKIVYANFNKIIICSQKDSIEDARSYCNYILA 1922


>sp|Q93YU5|EXOC4_ARATH Probable exocyst complex component 4
           OS=Arabidopsis thaliana GN=At3g10380 PE=2 SV=1
          Length = 1053

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 284 FTKNFLKAHFT-TVFGSKKRMFNNQI*SPLPFEPKTKSKHHAAMIERKQAIPSCQLLIDK 460
           FT+NF+K H   T+F   ++     I S   F P+  +  + A +E+ + I    L ID 
Sbjct: 645 FTENFVKDHLLPTMFVDYRKGVQQAISSAAAFRPRAHTTTYTATVEKGRPILQGLLAIDL 704

Query: 461 IS 466
           ++
Sbjct: 705 LA 706
tr_hit_id A7QUU5
Definition tr|A7QUU5|A7QUU5_VITVI Chromosome chr1 scaffold_180, whole genome shotgun sequence OS=Vitis vinifera
Align length 27
Score (bit) 39.3
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916161|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A05.
         (504 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QUU5|A7QUU5_VITVI Chromosome chr1 scaffold_180, whole genom...    39   0.11 
tr|Q0JDM7|Q0JDM7_ORYSJ Os04g0391900 protein OS=Oryza sativa subs...    39   0.14 
tr|Q01LC2|Q01LC2_ORYSA OSIGBa0145N07.5 protein OS=Oryza sativa G...    39   0.14 
tr|B8AT89|B8AT89_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.14 
tr|B7ES75|B7ES75_ORYSJ cDNA clone:J033064N18, full insert sequen...    39   0.14 
tr|A3ATB0|A3ATB0_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.14 
tr|A9PGT3|A9PGT3_POPTR Putative uncharacterized protein OS=Popul...    38   0.31 
tr|B4FLE1|B4FLE1_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.40 
tr|B0XJJ2|B0XJJ2_CULQU Testis-specific serine/threonine-protein ...    33   5.8  
tr|B6FPT3|B6FPT3_9CLOT Putative uncharacterized protein (Fragmen...    33   7.6  

>tr|A7QUU5|A7QUU5_VITVI Chromosome chr1 scaffold_180, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006982001
           PE=4 SV=1
          Length = 340

 Score = 39.3 bits (90), Expect = 0.11
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +2

Query: 8   NDVGITDEDLEWIMGRTATELFKGGWV 88
           N++ ++  +LEWIMGRT  ELF+G W+
Sbjct: 312 NEIPLSSSELEWIMGRTVMELFQGQWL 338


>tr|Q0JDM7|Q0JDM7_ORYSJ Os04g0391900 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0391900 PE=4 SV=1
          Length = 357

 Score = 38.9 bits (89), Expect = 0.14
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 14  VGITDEDLEWIMGRTATELFKGGWV 88
           + ++  DLEWI+G+T T+LF+G WV
Sbjct: 331 IPVSSSDLEWILGKTVTQLFQGAWV 355


>tr|Q01LC2|Q01LC2_ORYSA OSIGBa0145N07.5 protein OS=Oryza sativa
           GN=OSIGBa0145N07.5 PE=4 SV=1
          Length = 304

 Score = 38.9 bits (89), Expect = 0.14
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 14  VGITDEDLEWIMGRTATELFKGGWV 88
           + ++  DLEWI+G+T T+LF+G WV
Sbjct: 278 IPVSSSDLEWILGKTVTQLFQGAWV 302


>tr|B8AT89|B8AT89_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15682 PE=4 SV=1
          Length = 460

 Score = 38.9 bits (89), Expect = 0.14
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 14  VGITDEDLEWIMGRTATELFKGGWV 88
           + ++  DLEWI+G+T T+LF+G WV
Sbjct: 434 IPVSSSDLEWILGKTVTQLFQGAWV 458


>tr|B7ES75|B7ES75_ORYSJ cDNA clone:J033064N18, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 247

 Score = 38.9 bits (89), Expect = 0.14
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 14  VGITDEDLEWIMGRTATELFKGGWV 88
           + ++  DLEWI+G+T T+LF+G WV
Sbjct: 221 IPVSSSDLEWILGKTVTQLFQGAWV 245


>tr|A3ATB0|A3ATB0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014032 PE=4 SV=1
          Length = 333

 Score = 38.9 bits (89), Expect = 0.14
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +2

Query: 14  VGITDEDLEWIMGRTATELFKGGWV 88
           + ++  DLEWI+G+T T+LF+G WV
Sbjct: 307 IPVSSSDLEWILGKTVTQLFQGAWV 331


>tr|A9PGT3|A9PGT3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 300

 Score = 37.7 bits (86), Expect = 0.31
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +2

Query: 8   NDVGITDEDLEWIMGRTATELFKGGWV 88
           N V ++  +LEWIMG+T  +LF+G WV
Sbjct: 273 NQVPLSSSELEWIMGKTVMQLFQGQWV 299


>tr|B4FLE1|B4FLE1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 294

 Score = 37.4 bits (85), Expect = 0.40
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +2

Query: 14  VGITDEDLEWIMGRTATELFKGGWV 88
           + ++  DLEWI+G+T ++LF+G WV
Sbjct: 268 IPVSQSDLEWILGKTVSQLFQGAWV 292


>tr|B0XJJ2|B0XJJ2_CULQU Testis-specific serine/threonine-protein
           kinase 6 OS=Culex quinquefasciatus GN=CpipJ_CPIJ019614
           PE=3 SV=1
          Length = 590

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 130 EMECW*ENIQLLSLHPSTLEKLRCCSSHNPLQIFISYA 17
           ++ C  E ++++  HP+ +  + CCS+  PL + I YA
Sbjct: 365 DLVCELEIMKMIGKHPNVISLVGCCSNKGPLYVIIEYA 402


>tr|B6FPT3|B6FPT3_9CLOT Putative uncharacterized protein (Fragment)
           OS=Clostridium nexile DSM 1787 GN=CLONEX_02152 PE=4 SV=1
          Length = 397

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = -3

Query: 283 ALITAWRLDLVFGSNRNGLKIRWLNILFLLTCIILGAIVK*TLTNL-MRVSVEME 122
           AL+++  LD+  GS    +   WL +LFL+  I+L A++    +NL +RV+ ++E
Sbjct: 41  ALVSSCLLDIATGSREGSV---WLQVLFLVMLILLQAVLNIASSNLRIRVTTKIE 92