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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916163
Clone id YMU001_000084_A07
Library
Length 362
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAAGATTCGCGGCCGCAGGAATATTGTTATGTTTTTTCAACCCAAACAACTGCATTT
TAAATTAGCTTTGAAGACATCATCATTCACATGTCAGTCCATCACCACATATGGCAAAGC
ATAAATCCCAACGGATGGCAAAAGGACTGCTTCTGTCAAGACTTGTGCACTCTCAGCCTT
CACCATTTCATTGGCTCCTATTTGAAGTTCATTATCACAAAGAAAAAGCCACTCTTGATC
ATCAATTGCAGACCACACCTTTTCTACGTGCGGAATAAATTCAACTCTCCGTTTCCTATT
TAATTCGTCCTCGATCTCTGACACCACGAGAGACCGTGGCGGCACTAGATCATTTGTAGC
TG
■■Homology search results ■■ -
sp_hit_id Q9Y825
Definition sp|Q9Y825|YEC6_SCHPO Uncharacterized WD repeat-containing protein C25H1.06 OS=Schizosaccharomyces pombe
Align length 39
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916163|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A07.
         (337 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y825|YEC6_SCHPO Uncharacterized WD repeat-containing protei...    34   0.20 
sp|O74419|YQ52_SCHPO Uncharacterized protein C162.02c OS=Schizos...    30   4.9  
sp|O58665|PANB_PYRHO 3-methyl-2-oxobutanoate hydroxymethyltransf...    29   6.4  
sp|Q8U1R2|PANB_PYRFU 3-methyl-2-oxobutanoate hydroxymethyltransf...    29   6.4  
sp|Q9V0E1|PANB_PYRAB 3-methyl-2-oxobutanoate hydroxymethyltransf...    29   6.4  
sp|Q5R6R6|PNDC1_PONAB Poly(A)-specific ribonuclease PARN-like do...    29   8.4  
sp|Q69ZW3|EHBP1_MOUSE EH domain-binding protein 1 OS=Mus musculu...    29   8.4  
sp|Q8NDI1|EHBP1_HUMAN EH domain-binding protein 1 OS=Homo sapien...    29   8.4  

>sp|Q9Y825|YEC6_SCHPO Uncharacterized WD repeat-containing protein
           C25H1.06 OS=Schizosaccharomyces pombe GN=SPAC25H1.06
           PE=2 SV=1
          Length = 408

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 260 VEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAES 144
           VE+ PH   ++ A++D    F+CDN LQ   ++ VKA +
Sbjct: 238 VEYHPHHTNLYIAVNDNGIAFICDNRLQQTCSKTVKASN 276


>sp|O74419|YQ52_SCHPO Uncharacterized protein C162.02c
           OS=Schizosaccharomyces pombe GN=SPCC162.02c PE=2 SV=1
          Length = 981

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
 Frame = -3

Query: 302 VVSEIEDELNRKRRVEFIP--------------HVEKVWSAIDDQEWLFLCDNELQI 174
           +V E  DE  ++R +  +P              HVE++   +DD +W FL +N  +I
Sbjct: 674 LVRESSDEAAKERLISLVPSLRISSENIIVWAAHVEEIRFGLDDAKWEFLVENVSRI 730


>sp|O58665|PANB_PYRHO 3-methyl-2-oxobutanoate
           hydroxymethyltransferase OS=Pyrococcus horikoshii
           GN=panB PE=3 SV=1
          Length = 283

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -3

Query: 164 EMVKAESAQVLTEAVLLPSVGIYALPYV 81
           E V A+ A+++TE V +P++GI + PYV
Sbjct: 181 EFVLADVAKLVTEEVSIPTIGIGSGPYV 208


>sp|Q8U1R2|PANB_PYRFU 3-methyl-2-oxobutanoate
           hydroxymethyltransferase OS=Pyrococcus furiosus GN=panB
           PE=3 SV=1
          Length = 283

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -3

Query: 164 EMVKAESAQVLTEAVLLPSVGIYALPYV 81
           E V A+ A+++TE V +P++GI + PYV
Sbjct: 181 EFVLADVAKLVTEEVSIPTIGIGSGPYV 208


>sp|Q9V0E1|PANB_PYRAB 3-methyl-2-oxobutanoate
           hydroxymethyltransferase OS=Pyrococcus abyssi GN=panB
           PE=3 SV=1
          Length = 282

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -3

Query: 164 EMVKAESAQVLTEAVLLPSVGIYALPYV 81
           E V A+ A+++TE V +P++GI + PYV
Sbjct: 181 EFVLADVAKLVTEEVSIPTIGIGSGPYV 208


>sp|Q5R6R6|PNDC1_PONAB Poly(A)-specific ribonuclease PARN-like
           domain-containing protein 1 OS=Pongo abelii GN=PNLDC1
           PE=2 SV=1
          Length = 520

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/75 (22%), Positives = 36/75 (48%)
 Frame = +3

Query: 48  EDIIIHMSVHHHIWQSINPNGWQKDCFCQDLCTLSLHHFIGSYLKFIITKKKPLLIINCR 227
           E +++      H W   N +  ++ C+ +++  LS   F  ++ + ++  +KPL+  N  
Sbjct: 201 EGVVVKKVSKQHRWYLQNTSCDRESCWKENIL-LSARGF-SAFFQMLVKAQKPLVGHNMM 258

Query: 228 PHLFYVRNKFNSPFP 272
             L ++  KF  P P
Sbjct: 259 MDLLHLHEKFFRPLP 273


>sp|Q69ZW3|EHBP1_MOUSE EH domain-binding protein 1 OS=Mus musculus
           GN=Ehbp1 PE=2 SV=2
          Length = 1231

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/96 (21%), Positives = 40/96 (41%)
 Frame = -3

Query: 317 PPRSLVVSEIEDELNRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAESAQ 138
           P R +VV  + + +     +   PH E+     +D+EW F+ +NE   G  + +   S  
Sbjct: 65  PYRGVVVWPVPENIEITVTLFKDPHAEE----FEDKEWTFVIENESPSGRRKALATSSIN 120

Query: 137 VLTEAVLLPSVGIYALPYVVMD*HVNDDVFKANLKC 30
           +   A  +P+     L +  +   V     + +L C
Sbjct: 121 MKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSC 156


>sp|Q8NDI1|EHBP1_HUMAN EH domain-binding protein 1 OS=Homo sapiens
           GN=EHBP1 PE=1 SV=3
          Length = 1231

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/96 (21%), Positives = 40/96 (41%)
 Frame = -3

Query: 317 PPRSLVVSEIEDELNRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAESAQ 138
           P R +VV  + + +     +   PH E+     +D+EW F+ +NE   G  + +   S  
Sbjct: 65  PYRGVVVWPVPENIEITVTLFKDPHAEE----FEDKEWTFVIENESPSGRRKALATSSIN 120

Query: 137 VLTEAVLLPSVGIYALPYVVMD*HVNDDVFKANLKC 30
           +   A  +P+     L +  +   V     + +L C
Sbjct: 121 MKQYASPMPTQTDVKLKFKPLSKKVVSAALQFSLSC 156
tr_hit_id A7Q719
Definition tr|A7Q719|A7Q719_VITVI Chromosome chr5 scaffold_58, whole genome shotgun sequence OS=Vitis vinifera
Align length 68
Score (bit) 43.5
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916163|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A07.
         (337 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q719|A7Q719_VITVI Chromosome chr5 scaffold_58, whole genome...    44   0.005
tr|A9RMZ7|A9RMZ7_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|Q81L97|Q81L97_BACAN Bacterial extracellular solute-binding pr...    37   0.38 
tr|Q6HD29|Q6HD29_BACHK Oligopeptide ABC transporter, oligopeptid...    37   0.38 
tr|B7JR00|B7JR00_BACCE Bacterial extracellular solute-binding pr...    37   0.38 
tr|B3YUR1|B3YUR1_BACCE Bacterial extracellular solute-binding pr...    37   0.38 
tr|B3J5S8|B3J5S8_BACAN Bacterial extracellular solute-binding pr...    37   0.38 
tr|B1UT15|B1UT15_BACAN Bacterial extracellular solute-binding pr...    37   0.38 
tr|B1GLR8|B1GLR8_BACAN Bacterial extracellular solute-binding pr...    37   0.38 
tr|B1F3P7|B1F3P7_BACAN Bacterial extracellular solute-binding pr...    37   0.38 
tr|B0QM99|B0QM99_BACAN Bacterial extracellular solute-binding pr...    37   0.38 
tr|B0Q9A9|B0Q9A9_BACAN Bacterial extracellular solute-binding pr...    37   0.38 
tr|B0ATI4|B0ATI4_BACAN Bacterial extracellular solute-binding pr...    37   0.38 
tr|Q9SFV8|Q9SFV8_ARATH T1B9.5 protein OS=Arabidopsis thaliana GN...    35   1.4  
tr|Q633U5|Q633U5_BACCZ Bacterial extracellular solute-binding pr...    35   1.9  
tr|A3BV15|A3BV15_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|A2YX99|A2YX99_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|A7QZF7|A7QZF7_VITVI Chromosome undetermined scaffold_274, who...    35   2.5  

>tr|A7Q719|A7Q719_VITVI Chromosome chr5 scaffold_58, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031638001
           PE=4 SV=1
          Length = 338

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
 Frame = -3

Query: 263 RVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKA------ESAQVLTEAVLLPSVG 102
           +V  +P +E+ WS  DDQEWLF       I  +E  K       E+ QV  EA+ + S  
Sbjct: 274 QVLLVPKMEE-WSDFDDQEWLF----SSSISQSEKPKMGSSGGDETPQVWAEALQVDSAD 328

Query: 101 IYALPYVV 78
           IYALPYV+
Sbjct: 329 IYALPYVI 336


>tr|A9RMZ7|A9RMZ7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_68273 PE=4 SV=1
          Length = 265

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
 Frame = -3

Query: 230 WSAIDDQEWLFLCDNELQIGANEMVKAE--------SAQVLTEAVLLPSVGIYALPYVV 78
           WS + D++WLF       +G++   KAE        S QV  +AVLLP+  +YALPYVV
Sbjct: 208 WSDVPDEDWLFA---GRPLGSHPKPKAEVERGAGESSVQVWADAVLLPACELYALPYVV 263


>tr|Q81L97|Q81L97_BACAN Bacterial extracellular solute-binding
           protein, family 5 OS=Bacillus anthracis GN=BAS4390 PE=4
           SV=1
          Length = 521

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 320 VPPRSLVVSEIEDEL-NRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAES 144
           +P  S+V  ++ + L  R + ++F P + K W  IDD  W F     +         AE+
Sbjct: 65  IPSASVVYHKVYENLVQRDKNMDFKPMLAKEWKQIDDLNWEFKLQQGVTFQDGAPFNAEA 124

Query: 143 AQVLTEAVLLPSVG 102
            +   E VL P VG
Sbjct: 125 VKKNFERVLDPKVG 138


>tr|Q6HD29|Q6HD29_BACHK Oligopeptide ABC transporter,
           oligopeptide-binding protein OS=Bacillus thuringiensis
           subsp. konkukian GN=oppA PE=4 SV=1
          Length = 521

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 320 VPPRSLVVSEIEDEL-NRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAES 144
           +P  S+V  ++ + L  R + ++F P + K W  IDD  W F     +         AE+
Sbjct: 65  IPSASVVYHKVYENLVQRDKNMDFKPMLAKEWKQIDDLNWEFKLQQGVTFQDGAPFNAEA 124

Query: 143 AQVLTEAVLLPSVG 102
            +   E VL P VG
Sbjct: 125 VKKNFERVLDPKVG 138


>tr|B7JR00|B7JR00_BACCE Bacterial extracellular solute-binding
           protein, family 5 OS=Bacillus cereus AH820
           GN=BCAH820_4608 PE=4 SV=1
          Length = 521

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 320 VPPRSLVVSEIEDEL-NRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAES 144
           +P  S+V  ++ + L  R + ++F P + K W  IDD  W F     +         AE+
Sbjct: 65  IPSASVVYHKVYENLVQRDKNMDFKPMLAKEWKQIDDLNWEFKLQQGVTFQDGAPFNAEA 124

Query: 143 AQVLTEAVLLPSVG 102
            +   E VL P VG
Sbjct: 125 VKKNFERVLDPKVG 138


>tr|B3YUR1|B3YUR1_BACCE Bacterial extracellular solute-binding
           protein, family 5 OS=Bacillus cereus W GN=BCW_4400 PE=4
           SV=1
          Length = 521

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 320 VPPRSLVVSEIEDEL-NRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAES 144
           +P  S+V  ++ + L  R + ++F P + K W  IDD  W F     +         AE+
Sbjct: 65  IPSASVVYHKVYENLVQRDKNMDFKPMLAKEWKQIDDLNWEFKLQQGVTFQDGAPFNAEA 124

Query: 143 AQVLTEAVLLPSVG 102
            +   E VL P VG
Sbjct: 125 VKKNFERVLDPKVG 138


>tr|B3J5S8|B3J5S8_BACAN Bacterial extracellular solute-binding
           protein, family 5 OS=Bacillus anthracis Tsiankovskii-I
           GN=BATI_4564 PE=4 SV=1
          Length = 521

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 320 VPPRSLVVSEIEDEL-NRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAES 144
           +P  S+V  ++ + L  R + ++F P + K W  IDD  W F     +         AE+
Sbjct: 65  IPSASVVYHKVYENLVQRDKNMDFKPMLAKEWKQIDDLNWEFKLQQGVTFQDGAPFNAEA 124

Query: 143 AQVLTEAVLLPSVG 102
            +   E VL P VG
Sbjct: 125 VKKNFERVLDPKVG 138


>tr|B1UT15|B1UT15_BACAN Bacterial extracellular solute-binding
           protein, family 5 OS=Bacillus anthracis str. A0174
           GN=BAO_4709 PE=4 SV=1
          Length = 521

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 320 VPPRSLVVSEIEDEL-NRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAES 144
           +P  S+V  ++ + L  R + ++F P + K W  IDD  W F     +         AE+
Sbjct: 65  IPSASVVYHKVYENLVQRDKNMDFKPMLAKEWKQIDDLNWEFKLQQGVTFQDGAPFNAEA 124

Query: 143 AQVLTEAVLLPSVG 102
            +   E VL P VG
Sbjct: 125 VKKNFERVLDPKVG 138


>tr|B1GLR8|B1GLR8_BACAN Bacterial extracellular solute-binding
           protein, family 5 OS=Bacillus anthracis str. A0465
           GN=BAM_4786 PE=4 SV=1
          Length = 521

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 320 VPPRSLVVSEIEDEL-NRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAES 144
           +P  S+V  ++ + L  R + ++F P + K W  IDD  W F     +         AE+
Sbjct: 65  IPSASVVYHKVYENLVQRDKNMDFKPMLAKEWKQIDDLNWEFKLQQGVTFQDGAPFNAEA 124

Query: 143 AQVLTEAVLLPSVG 102
            +   E VL P VG
Sbjct: 125 VKKNFERVLDPKVG 138


>tr|B1F3P7|B1F3P7_BACAN Bacterial extracellular solute-binding
           protein, family 5 OS=Bacillus anthracis str. A0389
           GN=BAK_4808 PE=4 SV=1
          Length = 521

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 320 VPPRSLVVSEIEDEL-NRKRRVEFIPHVEKVWSAIDDQEWLFLCDNELQIGANEMVKAES 144
           +P  S+V  ++ + L  R + ++F P + K W  IDD  W F     +         AE+
Sbjct: 65  IPSASVVYHKVYENLVQRDKNMDFKPMLAKEWKQIDDLNWEFKLQQGVTFQDGAPFNAEA 124

Query: 143 AQVLTEAVLLPSVG 102
            +   E VL P VG
Sbjct: 125 VKKNFERVLDPKVG 138