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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916164
Clone id YMU001_000084_A08
Library
Length 487
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTAAATCCATATATCCATTCAAGTGCAAATAAACAAATAAAGAGATAGTATCCA
CATAAATGTCAGCAAACCTTAATTCCTTGCGATTTAGACTTTGTCCACAAAGCGACCTTG
AATTTGTACGGGCCGCATGTTTTCCACCAAGAGCACTTTGTATATGTTGTAGTGTTCAGC
TTCCATCACAAGTAGAAAATCCGAAGTCATGGATAGAGTTCCAATTGCTTACTACAGTAT
GTGTATATGGAAAATGCAGAACATAAAAATGTCTGTCTGAACAACCATGACTCCAAAATT
ACTAAACAGTCCATTGTTGCAACCATGGACCACCTCCATACTCCATTCAAAAAGTTGCAA
AAGAGGATCTTTACATAAGTCAAAGTGGCTTAATTTGCTCTGCATACATGAAATACTACA
TGCTCCCGACATATCTTTAATCTAAGAGAGGCCCAAATGTTGATTGGTTGATAGATTACC
AAAGATA
■■Homology search results ■■ -
sp_hit_id P10056
Definition sp|P10056|PAPA3_CARPA Caricain OS=Carica papaya
Align length 55
Score (bit) 30.4
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916164|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A08.
         (487 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10056|PAPA3_CARPA Caricain OS=Carica papaya PE=1 SV=2              30   4.4  
sp|Q8BX79|GPR21_MOUSE Probable G-protein coupled receptor 21 OS=...    30   5.7  
sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FE...    29   9.8  

>sp|P10056|PAPA3_CARPA Caricain OS=Carica papaya PE=1 SV=2
          Length = 348

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 219 FQLLTTVCVYGKCRT*KC--LSEQP*LQNY*TVHCCNHGPPPYSIQKVAKEDLYI 377
           F  + TV    K RT K   LSEQ  +      H C  G PPY+++ VAK  +++
Sbjct: 160 FSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHL 214


>sp|Q8BX79|GPR21_MOUSE Probable G-protein coupled receptor 21 OS=Mus
           musculus GN=Gpr21 PE=2 SV=1
          Length = 349

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 312 HCC---NHGPPPYSIQKVAKEDLYISQSGLICSAYMKYYMLP 428
           HC    NH    Y IQ +A  DL +  S L+ S  + YY LP
Sbjct: 54  HCAPLLNHHSTSYFIQTMAYADLLVGVSCLVPSLSLLYYPLP 95


>sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5
            PE=2 SV=2
          Length = 2093

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -3

Query: 362  FCNFLNGVWRWSMVATMDCLVILESWLFRQTFLCSAFSIYTYCSKQLELYP*LRIFYL*W 183
            FC      +R+ ++A M  + I+   LF   +    +   ++   QL+LYP ++IF +  
Sbjct: 1986 FCYIFWKRYRFKLIAFM-VISIIALMLFNFIYSAPHYLAMSWIKPQLQLYPPIKIFNIIN 2044

Query: 182  KLNTT 168
             LNT+
Sbjct: 2045 SLNTS 2049
tr_hit_id O96204
Definition tr|O96204|O96204_PLAF7 Putative uncharacterized protein PFB0555c OS=Plasmodium falciparum (isolate 3D7)
Align length 40
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916164|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A08.
         (487 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O96204|O96204_PLAF7 Putative uncharacterized protein PFB0555c...    33   7.2  
tr|B7IG19|B7IG19_9THEM Putative uncharacterized protein OS=Therm...    33   9.3  

>tr|O96204|O96204_PLAF7 Putative uncharacterized protein PFB0555c
            OS=Plasmodium falciparum (isolate 3D7) GN=PFB0555c PE=4
            SV=2
          Length = 4091

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 232  LQYVYMENAEHKNVCLNNHDSKITKQSIVATMDHL-HTPF 348
            L YV+++N +HKNV  NNH +    +++   + H+ H+ F
Sbjct: 3420 LLYVFVKNFKHKNVNFNNHQNNKNHENVNTNVGHVFHSSF 3459


>tr|B7IG19|B7IG19_9THEM Putative uncharacterized protein
           OS=Thermosipho africanus TCF52B GN=THA_545 PE=4 SV=1
          Length = 420

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
 Frame = +1

Query: 235 QYVYMENAEHKNVCLNNHDSKITKQSIVATMDHLHTPFKKLQKRIFT*VKVA---*FALH 405
           Q VY+ENA  +NV ++  +  + K S++++++  H  F  L+    T + +A      L+
Sbjct: 254 QLVYIENAHLENVNVSKTNVVVIKNSVISSINAKHIAFLVLENSTITNLNIANTREVILN 313

Query: 406 T*NTTCSR-------HIFNLREAQMLI 465
             ++T SR       +I+NLR   + +
Sbjct: 314 NIDSTNSRVEGLTNINIYNLRSKSLTV 340