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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916166
Clone id YMU001_000084_A10
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCTGGCACACCATCTGAACGCAATTGAAACCTGCATTGTTCTCCAAAACCAGCTGACGAT
CCTGCATCAAAACGCTGTTGAAGCCATTTAATACACCAGCACTCGCCTTGCTGAAACCTG
AATTAACTTTACTGCTAGCCGCACTCTCCAAACTGCAGCCAACCCCATTTCCCTCGATTA
CTTTCTTCATCATCAAAGCCCATGTCAAGGAGATCACTCTTAGTTTCACGTAAGCGTTCC
AAATTATCCAGGCCTTTCTGCATTTCATGGTTTGCTTTGTTGAACTCAAAACCCCCTCTC
ATTGTGACACCACTGTCCAGCGTACCATCCAAACCTTCAATCTCTTTGGAATCACCTCCT
AATTCAGCCCCAAGGCACATGTCAAATATCAGGCTCTTGCTTTCTGGAGGAATCATGTTG
TGTGCAGGAACATCTGCTTTTCGTCCACTTTTGCCACTTGCATTCCCTTGATCTAGCGCA
TT
■■Homology search results ■■ -
sp_hit_id Q9Z398
Definition sp|Q9Z398|PMP9_CHLPN Probable outer membrane protein pmp9 OS=Chlamydia pneumoniae
Align length 66
Score (bit) 33.1
E-value 0.68
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916166|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A10.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z398|PMP9_CHLPN Probable outer membrane protein pmp9 OS=Chl...    33   0.68 
sp|Q5AZM3|SEC31_EMENI Protein transport protein sec31 OS=Emerice...    32   2.0  
sp|Q09ME5|RPOA_CITSI DNA-directed RNA polymerase subunit alpha O...    31   3.4  
sp|Q8EUM5|GRPE_MYCPE Protein grpE OS=Mycoplasma penetrans GN=grp...    31   3.4  
sp|A0LLA4|RECA_SYNFM Protein recA OS=Syntrophobacter fumaroxidan...    30   5.7  
sp|P03332|GAG_MLVMO Gag polyprotein OS=Moloney murine leukemia v...    30   5.7  
sp|Q4I327|BFR2_GIBZE Protein BFR2 OS=Gibberella zeae GN=BFR2 PE=...    30   5.7  
sp|Q5BKY6|YV018_HUMAN Putative uncharacterized protein DKFZp434K...    30   7.5  
sp|P18192|PGLR1_PECCC Endo-polygalacturonase OS=Pectobacterium c...    30   7.5  
sp|Q8NQV3|GPDA_CORGL Glycerol-3-phosphate dehydrogenase [NAD(P)+...    30   7.5  
sp|A4QDT3|GPDA_CORGB Glycerol-3-phosphate dehydrogenase [NAD(P)+...    30   7.5  
sp|P03333|GAG_MLVAB Gag polyprotein OS=Abelson murine leukemia v...    30   7.5  
sp|Q8R2Q6|TECT3_MOUSE Tectonic-3 OS=Mus musculus GN=Tctn3 PE=2 SV=1    29   9.8  
sp|O75325|LRRN2_HUMAN Leucine-rich repeat neuronal protein 2 OS=...    29   9.8  
sp|P32594|GAG_MSVMT Gag polyprotein OS=Moloney murine sarcoma vi...    29   9.8  
sp|P03334|GAG_MSVMO Gag polyprotein OS=Moloney murine sarcoma vi...    29   9.8  
sp|P26806|GAG_MLVFF Gag polyprotein OS=Friend murine leukemia vi...    29   9.8  
sp|Q923L3|CSMD1_MOUSE CUB and sushi domain-containing protein 1 ...    29   9.8  

>sp|Q9Z398|PMP9_CHLPN Probable outer membrane protein pmp9
           OS=Chlamydia pneumoniae GN=pmp9 PE=2 SV=1
          Length = 928

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -2

Query: 244 IWNAYVKLRVISLTWALMMKKVIEGNGVGCSLES----AASSKVNSGFSKASAGVLNGFN 77
           +W ++V +R I    A  +++  E  G+ C   S      S+K+N GF   SAG + G  
Sbjct: 615 LWGSFVDVRSIQQLVATKVRQSQETRGIWCEGISNFFHKDSTKINKGFRHISAGYVVGAT 674

Query: 76  SVLMQD 59
           + L  D
Sbjct: 675 TTLASD 680


>sp|Q5AZM3|SEC31_EMENI Protein transport protein sec31 OS=Emericella
            nidulans GN=sec31 PE=3 SV=1
          Length = 1275

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 280  LNSKPPLIVTPLSSVPSKPSISLESPPNSAPRHMS 384
            L++ PP    P ++VP  PS+   +PP S PR  S
Sbjct: 1027 LSAVPPPPANPYAAVPQSPSVGSMAPPASIPRGSS 1061


>sp|Q09ME5|RPOA_CITSI DNA-directed RNA polymerase subunit alpha
           OS=Citrus sinensis GN=rpoA PE=3 SV=1
          Length = 328

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 205 TWALMMKKVIEGNGVGCSLESAASSKVNSGFSKASAGVLNGFNSVLMQDRQLVLENNAGF 26
           T  + M++V+ G   G  +  A S K+   +S    G+    + +LM  + +VL +N   
Sbjct: 44  TIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTI-VGIQESVHEILMNLKDIVLRSNLYG 102

Query: 25  NCVQMVC 5
            C  ++C
Sbjct: 103 TCDALIC 109


>sp|Q8EUM5|GRPE_MYCPE Protein grpE OS=Mycoplasma penetrans GN=grpE
           PE=3 SV=1
          Length = 235

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 287 EFNKANHEMQKGLDNL--ERLRETKSDLLDMGFDD 189
           EF++ N + QK  +N+  E L E +SDL D  FDD
Sbjct: 11  EFHEKNQQSQKDNNNVKKENLHEDQSDLNDANFDD 45


>sp|A0LLA4|RECA_SYNFM Protein recA OS=Syntrophobacter fumaroxidans
           (strain DSM 10017 / MPOB) GN=recA PE=3 SV=1
          Length = 343

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -1

Query: 419 NMIPPESKSLIFDMCLGAELGGDSKEIEGLDGTLDSGVTMRGGFEFNKANHEMQKGLDNL 240
           N I P  + + FD+  G    G S+E + LD  ++SG   + G  ++ +   + +G +N 
Sbjct: 251 NKIAPPFREVEFDVVYGR---GISREGDILDLAVESGAIEKSGTWYSYSGERLGQGRENA 307

Query: 239 ERLRETKSDLL 207
           +       DLL
Sbjct: 308 KNFLREHPDLL 318


>sp|P03332|GAG_MLVMO Gag polyprotein OS=Moloney murine leukemia
           virus GN=gag PE=1 SV=4
          Length = 538

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +1

Query: 253 PFCISWFALLNSKPPLI------VTPLSSVPSKPSISLESPPNSAPR 375
           P+ ++W AL    PP +        P    PS PS+ LE P ++ PR
Sbjct: 81  PYIVTWEALAFDPPPWVKPFVHPKPPPPLPPSAPSLPLEPPRSTPPR 127


>sp|Q4I327|BFR2_GIBZE Protein BFR2 OS=Gibberella zeae GN=BFR2 PE=3
           SV=1
          Length = 538

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = -1

Query: 371 GAELGGDSKEIEGLDGTLDSGVTMRGGFEFNKANHEMQKGLDNLERLRETKSDLLDMGFD 192
           GAELGG   E E +D  LD+ V   G  +     ++ ++G  + E   E  S+       
Sbjct: 165 GAELGGSDSEDEEMDDGLDALVDGEGDSDDESDENDDEEGSGDDEEDDEDDSE------S 218

Query: 191 DEESNRGK 168
           DEE ++ K
Sbjct: 219 DEEDSKAK 226


>sp|Q5BKY6|YV018_HUMAN Putative uncharacterized protein DKFZp434K191
           OS=Homo sapiens PE=2 SV=1
          Length = 102

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +2

Query: 308 HHCPAYHPNLQSLWNHLLIQPQGTCQISGSCFLEESCCVQEHLLFVHFCHLHSLDLAH 481
           HHCP  HP        +L +P  T  + G     + C    H +  H  H  +LDL H
Sbjct: 24  HHCPHLHP--------VLRRPTLT-DVEGCLQCLDVCGHPRHAVDAHLLHASALDLLH 72


>sp|P18192|PGLR1_PECCC Endo-polygalacturonase OS=Pectobacterium
           carotovorum subsp. carotovorum GN=peh PE=3 SV=1
          Length = 402

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 181 VIEGNGVGCSLESAASSKVNSGFSKASAGVLNGFNSVLMQDRQL 50
           V++ NG GC     A+S  NSG      G ++G   V +QD+++
Sbjct: 117 VVDTNGKGCDAFITATSTTNSGI--YGPGTIDGQGGVKLQDKKV 158


>sp|Q8NQV3|GPDA_CORGL Glycerol-3-phosphate dehydrogenase [NAD(P)+]
           OS=Corynebacterium glutamicum GN=gpsA PE=3 SV=1
          Length = 332

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -1

Query: 374 LGAELGGDSKEIEGLDGTLDSGVTMRGGFEFNKANHEMQKGLDNLERLRETKSDLLDMGF 195
           LGA LG D+K   GL G  D   T       N++  E     ++LE+ RE  +  +  G 
Sbjct: 225 LGATLGADAKTFSGLAGMGDLVATCSSPLSRNRSFGERLGQGESLEKAREATNGQVAEGV 284

Query: 194 DDEES 180
              +S
Sbjct: 285 ISSQS 289
tr_hit_id B3KZ12
Definition tr|B3KZ12|B3KZ12_PLAKH Erythrocyte membrane protein, putative OS=Plasmodium knowlesi (strain H)
Align length 52
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916166|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_A10.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3KZ12|B3KZ12_PLAKH Erythrocyte membrane protein, putative OS...    35   1.8  
tr|B2J5S0|B2J5S0_NOSP7 K+-transporting ATPase, B subunit OS=Nost...    33   7.0  
tr|B0XGH2|B0XGH2_CULQU 26S protease regulatory subunit 6a OS=Cul...    33   7.0  
tr|A4H8E4|A4H8E4_LEIBR Putative uncharacterized protein OS=Leish...    33   7.0  
tr|A9EVR3|A9EVR3_SORC5 Conserved carbohydrate-binding protein, R...    33   9.2  

>tr|B3KZ12|B3KZ12_PLAKH Erythrocyte membrane protein, putative
            OS=Plasmodium knowlesi (strain H) GN=PKH_010490 PE=4 SV=1
          Length = 1769

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 172  GNGVGCSLESAASSKVNSGFSKASAGVLNGFNSVLMQDRQLVLENNAGFNCV 17
            GNG  CS  + ++ K N  +SK+ + ++     +  +D  ++ ENN+G N V
Sbjct: 1419 GNGNNCSSNNKSAMKTNGEYSKSGSKLMGNNQKLNKKDPLVMYENNSGNNSV 1470


>tr|B2J5S0|B2J5S0_NOSP7 K+-transporting ATPase, B subunit OS=Nostoc
           punctiforme (strain ATCC 29133 / PCC 73102)
           GN=Npun_R0301 PE=4 SV=1
          Length = 701

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = -1

Query: 407 PESKSLI-FDMCLGAELGGDSKEIEGLD---GTLDSGVTMRGGFEFNKANHEMQKGLDNL 240
           PE KS+I     LGA    DS + EG+D    T  SG  + GG+E  K   E  KG    
Sbjct: 369 PEGKSIIRLAEKLGARFDFDSNQAEGVDFSAKTRMSGTNLPGGYEARKGAVEAIKGFVRS 428

Query: 239 ERLRET 222
              R+T
Sbjct: 429 RNGRDT 434


>tr|B0XGH2|B0XGH2_CULQU 26S protease regulatory subunit 6a OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ018219 PE=4 SV=1
          Length = 221

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 286 SKPPLIVTPLSSVPSKPSISLESPPNSAP 372
           S  PL+V P S +PS+P +S + PP + P
Sbjct: 3   SSQPLVVPPQSMLPSQPLVSTQPPPQTMP 31


>tr|A4H8E4|A4H8E4_LEIBR Putative uncharacterized protein OS=Leishmania
            braziliensis GN=LbrM16_V2.0180 PE=4 SV=1
          Length = 4433

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 1/101 (0%)
 Frame = -1

Query: 449  SGRKADVPAHNMIPPES-KSLIFDMCLGAELGGDSKEIEGLDGTLDSGVTMRGGFEFNKA 273
            SG    V AH     ES  S       GA  G        ++ T D GV +   +E +  
Sbjct: 1252 SGSAVMVDAHGSACEESISSPTVPAATGARAGEAEVTFGTINSTGDGGVPILHSYESDSG 1311

Query: 272  NHEMQKGLDNLERLRETKSDLLDMGFDDEESNRGKWGWLQF 150
            +   +K      RLR     L+    DD + +RG   W  F
Sbjct: 1312 HSSSRKRRRGRRRLRSLFGGLIPTTTDDSDDDRGDERWRPF 1352


>tr|A9EVR3|A9EVR3_SORC5 Conserved carbohydrate-binding protein, Rhs
           family OS=Sorangium cellulosum (strain So ce56)
           GN=sce4086 PE=4 SV=1
          Length = 1367

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
 Frame = -1

Query: 434 DVPAHNMIPPESKSLIFDMCLGAELGGDSKEIEGLDGTLDSGVTMRGGFEFNKA------ 273
           D P H M+P E+     +      LGG   E+E  DGT+     + G  E   A      
Sbjct: 300 DHPGHTMLPGEAVYHPIERLSLRCLGGSRWEVEARDGTVREFAPVPGRPEARAALQRIRS 359

Query: 272 ---NHEMQKGLD---NLERLRETKSDLLDMGFDDEE 183
              NHE+    D    LE +R++   L+ +  DDE+
Sbjct: 360 RCRNHEIVLAYDARGRLEWVRDSAGRLVWLEHDDED 395