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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916169
Clone id YMU001_000084_B03
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTAAAGTAATCATATCCTTCAGTGTCAGTTTTGGATCATGGTAGAGAACTGGTTGCCTT
GAAAAACATCTCCAATGCAAGGGTGAATTGATTCACCATGGAATGCATCGGGGTACAAAC
TAGGTCCCTACACCATTTTACCATGTCAAAATGCGATGTAAGAAGTAGCAATCAATTTCT
TCTTATGTCCTTGGCATCCTCAGCTTGAAGCATTGTACGCAAGTGTGGACTATCCTTCTT
ATCCTGAAGCTCAATAGCAAGTCGTCTCAAATGGTACATGACAATAGACAATCCAGTAAT
GTTGGTACAATAATTTGCCCCAAAAAAGGAAGAATAGCAAAAGTTGGCAGGACCCCTAAT
CTGGTGTCTTGGACCATGCTGTCCCCTTGTCTTGATCCCTGTTGGAAACCTTGATCTCAA
GAAGCCTCTCCACTGGTGTTCTGCAGATGGGGCAATGGCTAGATTGGAACCTCAGTACTT
TCGCATATGCGCTGCACATACACATGTGT
■■Homology search results ■■ -
sp_hit_id Q6INH1
Definition sp|Q6INH1|RN157_XENLA RING finger protein 157 OS=Xenopus laevis
Align length 37
Score (bit) 48.5
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916169|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_B03.
         (509 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6INH1|RN157_XENLA RING finger protein 157 OS=Xenopus laevis ...    49   2e-05
sp|Q7ZUL9|MGRN1_DANRE Probable E3 ubiquitin-protein ligase MGRN1...    47   5e-05
sp|Q3TEL6|RN157_MOUSE RING finger protein 157 OS=Mus musculus GN...    46   1e-04
sp|Q96PX1|RN157_HUMAN RING finger protein 157 OS=Homo sapiens GN...    46   1e-04
sp|Q5XIQ4|MGRN1_RAT Probable E3 ubiquitin-protein ligase MGRN1 O...    46   1e-04
sp|Q9D074|MGRN1_MOUSE Probable E3 ubiquitin-protein ligase MGRN1...    46   1e-04
sp|O60291|MGRN1_HUMAN Probable E3 ubiquitin-protein ligase MGRN1...    46   1e-04
sp|Q0MW30|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus ...    33   1.0  
sp|A8MQ27|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo...    32   1.7  
sp|Q5U623|MCAF2_HUMAN Activating transcription factor 7-interact...    32   2.3  
sp|P56273|MDM2_XENLA E3 ubiquitin-protein ligase Mdm2 OS=Xenopus...    31   2.9  
sp|P23804|MDM2_MOUSE E3 ubiquitin-protein ligase Mdm2 OS=Mus mus...    31   2.9  
sp|Q00987|MDM2_HUMAN E3 ubiquitin-protein ligase Mdm2 OS=Homo sa...    31   2.9  
sp|P56951|MDM2_HORSE E3 ubiquitin-protein ligase Mdm2 OS=Equus c...    31   2.9  
sp|Q7YRZ8|MDM2_FELCA E3 ubiquitin-protein ligase Mdm2 OS=Felis s...    31   2.9  
sp|P56950|MDM2_CANFA E3 ubiquitin-protein ligase Mdm2 OS=Canis f...    31   2.9  
sp|Q60524|MDM2_MESAU E3 ubiquitin-protein ligase Mdm2 (Fragment)...    30   5.0  
sp|O42354|MDM2_DANRE E3 ubiquitin-protein ligase Mdm2 OS=Danio r...    30   5.0  
sp|Q65JU9|PYRC_BACLD Dihydroorotase OS=Bacillus licheniformis (s...    30   6.6  
sp|O76050|NEUL1_HUMAN Neuralized-like protein 1 OS=Homo sapiens ...    30   6.6  

>sp|Q6INH1|RN157_XENLA RING finger protein 157 OS=Xenopus laevis
           GN=rnf157 PE=2 SV=1
          Length = 674

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNR 398
           H+C+C+A A  LR+Q+S+CPICR P   LL+I+   +
Sbjct: 294 HLCLCNACADTLRYQASNCPICRLPFRALLQIRAMRK 330


>sp|Q7ZUL9|MGRN1_DANRE Probable E3 ubiquitin-protein ligase MGRN1
           OS=Danio rerio GN=mgrn1 PE=2 SV=1
          Length = 529

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIK 410
           H+C+C+A A  LR+Q+++CPICR P   LL+I+
Sbjct: 293 HLCLCNACADTLRYQANNCPICRLPFRALLQIR 325


>sp|Q3TEL6|RN157_MOUSE RING finger protein 157 OS=Mus musculus
           GN=Rnf157 PE=2 SV=2
          Length = 685

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 26/37 (70%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNR 398
           H+C+C+  A  LR+Q+++CPICR P   LL+I+   +
Sbjct: 294 HLCLCNTCADTLRYQANNCPICRLPFRALLQIRAMRK 330


>sp|Q96PX1|RN157_HUMAN RING finger protein 157 OS=Homo sapiens
           GN=RNF157 PE=2 SV=3
          Length = 679

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 26/37 (70%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNR 398
           H+C+C+  A  LR+Q+++CPICR P   LL+I+   +
Sbjct: 294 HLCLCNTCADTLRYQANNCPICRLPFRALLQIRAMRK 330


>sp|Q5XIQ4|MGRN1_RAT Probable E3 ubiquitin-protein ligase MGRN1
           OS=Rattus norvegicus GN=Mgrn1 PE=2 SV=1
          Length = 533

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 26/33 (78%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIK 410
           H+C+C++ A  LR+Q+++CPICR P   LL+I+
Sbjct: 296 HLCLCTSCADTLRYQANNCPICRLPFRALLQIR 328


>sp|Q9D074|MGRN1_MOUSE Probable E3 ubiquitin-protein ligase MGRN1
           OS=Mus musculus GN=Mgrn1 PE=1 SV=2
          Length = 532

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 26/33 (78%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIK 410
           H+C+C++ A  LR+Q+++CPICR P   LL+I+
Sbjct: 295 HLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327


>sp|O60291|MGRN1_HUMAN Probable E3 ubiquitin-protein ligase MGRN1
           OS=Homo sapiens GN=MGRN1 PE=1 SV=2
          Length = 552

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 26/33 (78%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIK 410
           H+C+C++ A  LR+Q+++CPICR P   LL+I+
Sbjct: 295 HLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327


>sp|Q0MW30|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus
           musculus GN=Neurl3 PE=2 SV=1
          Length = 546

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQS-SHCPICRTPVERLLEI 413
           HMC+C      LR Q+ + CPICR P++ +++I
Sbjct: 511 HMCLCHGCGLRLRRQARACCPICRRPIKDVIKI 543


>sp|A8MQ27|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo
           sapiens GN=NEURL3 PE=3 SV=1
          Length = 555

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQS-SHCPICRTPVERLLEI 413
           HMC+C +    L+ Q+ + CPICR P++ +++I
Sbjct: 520 HMCLCHSCGLRLKRQARACCPICRRPIKDVIKI 552


>sp|Q5U623|MCAF2_HUMAN Activating transcription factor 7-interacting
           protein 2 OS=Homo sapiens GN=ATF7IP2 PE=2 SV=2
          Length = 682

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 277 HDNRQSSNVGTIICPKKGRIAKVGRTPNLVSWTMLSPCLDPCWK 408
           HD RQS N   I+C +      V +TPNLV+    + C D   K
Sbjct: 210 HDKRQSDN---ILCSEDSGFVPVEKTPNLVNSVTSNNCADDILK 250
tr_hit_id A9SWZ9
Definition tr|A9SWZ9|A9SWZ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 44
Score (bit) 67.4
E-value 4.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916169|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_B03.
         (509 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SWZ9|A9SWZ9_PHYPA Predicted protein OS=Physcomitrella paten...    67   4e-10
tr|Q8RUJ8|Q8RUJ8_ORYSJ Os10g0204100 protein OS=Oryza sativa subs...    67   5e-10
tr|B8BG37|B8BG37_ORYSI Putative uncharacterized protein OS=Oryza...    67   5e-10
tr|A3C3D3|A3C3D3_ORYSJ Putative uncharacterized protein OS=Oryza...    67   5e-10
tr|Q10NY0|Q10NY0_ORYSJ cDNA clone:J023020P04, full insert sequen...    67   7e-10
tr|Q0DTD5|Q0DTD5_ORYSJ Os03g0254900 protein (Fragment) OS=Oryza ...    67   7e-10
tr|A3ABI1|A3ABI1_ORYSJ Putative uncharacterized protein OS=Oryza...    67   7e-10
tr|A2XEN7|A2XEN7_ORYSI Putative uncharacterized protein OS=Oryza...    67   7e-10
tr|B3U2B1|B3U2B1_CUCSA Zinc finger RING-type protein OS=Cucumis ...    65   1e-09
tr|A7PT26|A7PT26_VITVI Chromosome chr8 scaffold_29, whole genome...    65   2e-09
tr|A5B9W9|A5B9W9_VITVI Putative uncharacterized protein OS=Vitis...    65   2e-09
tr|Q2HV40|Q2HV40_MEDTR Zinc finger, RING-type OS=Medicago trunca...    64   3e-09
tr|Q9S752|Q9S752_ARATH Putative uncharacterized protein F11F8.36...    64   4e-09
tr|A9SCV6|A9SCV6_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   4e-09
tr|Q9LFH6|Q9LFH6_ARATH Putative uncharacterized protein F4P12_11...    64   6e-09
tr|A7NZI3|A7NZI3_VITVI Chromosome chr6 scaffold_3, whole genome ...    63   7e-09
tr|A9NRJ5|A9NRJ5_PICSI Putative uncharacterized protein OS=Picea...    61   4e-08
tr|A9NUZ8|A9NUZ8_PICSI Putative uncharacterized protein OS=Picea...    59   1e-07
tr|A7NWF8|A7NWF8_VITVI Chromosome chr5 scaffold_2, whole genome ...    58   2e-07
tr|Q9M8K4|Q9M8K4_ARATH Putative RING zinc finger protein OS=Arab...    58   3e-07
tr|Q8LA32|Q8LA32_ARATH Putative RING zinc finger protein (At3g06...    58   3e-07
tr|Q75HV4|Q75HV4_ORYSJ Putative uncharacterized protein OSJNBb00...    58   3e-07
tr|A3B3T0|A3B3T0_ORYSJ Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|A2Y4E4|A2Y4E4_ORYSI Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|Q9LYW5|Q9LYW5_ARATH Putative uncharacterized protein F15A17_2...    55   3e-06
tr|Q8L8P7|Q8L8P7_ARATH Putative RING zinc finger protein OS=Arab...    55   3e-06
tr|Q8GZ27|Q8GZ27_ARATH Putative uncharacterized protein At5g0320...    55   3e-06
tr|Q94E82|Q94E82_ORYSJ Mahogunin, ring finger 1-like protein (Os...    52   1e-05
tr|Q84ME1|Q84ME1_ARATH At5g19080/T16G12_120 OS=Arabidopsis thali...    52   1e-05
tr|B8A897|B8A897_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05

>tr|A9SWZ9|A9SWZ9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_216589 PE=4 SV=1
          Length = 414

 Score = 67.4 bits (163), Expect = 4e-10
 Identities = 31/44 (70%), Positives = 34/44 (77%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQDKGTA 377
           HMCMCS  AKVLRFQ++ CPICRTPVERLLEIKV     + G A
Sbjct: 329 HMCMCSECAKVLRFQTNRCPICRTPVERLLEIKVPKTGAEHGGA 372


>tr|Q8RUJ8|Q8RUJ8_ORYSJ Os10g0204100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0004P12.16 PE=4 SV=1
          Length = 425

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQDK 386
           HMCMCS  AKVLR+Q++ CPICR PVERLLEIKV+N+ +++
Sbjct: 360 HMCMCSECAKVLRYQTNRCPICRQPVERLLEIKVNNKGEEQ 400


>tr|B8BG37|B8BG37_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32999 PE=4 SV=1
          Length = 425

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQDK 386
           HMCMCS  AKVLR+Q++ CPICR PVERLLEIKV+N+ +++
Sbjct: 360 HMCMCSECAKVLRYQTNRCPICRQPVERLLEIKVNNKGEEQ 400


>tr|A3C3D3|A3C3D3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_029805 PE=4 SV=1
          Length = 426

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQDK 386
           HMCMCS  AKVLR+Q++ CPICR PVERLLEIKV+N+ +++
Sbjct: 361 HMCMCSECAKVLRYQTNRCPICRQPVERLLEIKVNNKGEEQ 401


>tr|Q10NY0|Q10NY0_ORYSJ cDNA clone:J023020P04, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g15000 PE=2
           SV=1
          Length = 430

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQDK 386
           HMCMCS  AKVLR+Q++ CPICR PVERLLEIKV+N+ +++
Sbjct: 356 HMCMCSECAKVLRYQTTRCPICRQPVERLLEIKVNNKAEEQ 396


>tr|Q0DTD5|Q0DTD5_ORYSJ Os03g0254900 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0254900 PE=4 SV=1
          Length = 481

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQDK 386
           HMCMCS  AKVLR+Q++ CPICR PVERLLEIKV+N+ +++
Sbjct: 407 HMCMCSECAKVLRYQTTRCPICRQPVERLLEIKVNNKAEEQ 447


>tr|A3ABI1|A3ABI1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008153 PE=4 SV=1
          Length = 290

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQDK 386
           HMCMCS  AKVLR+Q++ CPICR PVERLLEIKV+N+ +++
Sbjct: 216 HMCMCSECAKVLRYQTTRCPICRQPVERLLEIKVNNKAEEQ 256


>tr|A2XEN7|A2XEN7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10798 PE=4 SV=1
          Length = 240

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQDK 386
           HMCMCS  AKVLR+Q++ CPICR PVERLLEIKV+N+ +++
Sbjct: 166 HMCMCSECAKVLRYQTTRCPICRQPVERLLEIKVNNKAEEQ 206


>tr|B3U2B1|B3U2B1_CUCSA Zinc finger RING-type protein OS=Cucumis
           sativus PE=4 SV=1
          Length = 300

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQD 389
           HMCMCS  AKVLRFQ++ CPICR PV+RLLEI+VSN  ++
Sbjct: 260 HMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEE 299


>tr|A7PT26|A7PT26_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023187001
           PE=4 SV=1
          Length = 272

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 30/40 (75%), Positives = 31/40 (77%)
 Frame = -2

Query: 508 HMCMCSAYAKVLRFQSSHCPICRTPVERLLEIKVSNRDQD 389
           HMCMCS  AKVLRFQ+  CPICR  VERLLEIKVSN   D
Sbjct: 233 HMCMCSGCAKVLRFQTDRCPICRQLVERLLEIKVSNGSDD 272